Wall clock time and date at job start Tue Mar 31 2020 01:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29952 * 125.30756 * 2 1 4 4 O 1.41878 * 107.41589 * 180.02562 * 3 2 1 5 5 N 1.41872 * 106.38591 * 359.77298 * 4 3 2 6 6 C 1.29951 * 107.41733 * 0.37664 * 5 4 3 7 7 C 1.50701 * 125.30619 * 179.89283 * 6 5 4 8 8 N 1.46899 * 109.47130 * 269.68617 * 7 6 5 9 9 C 1.46895 * 111.00004 * 169.99787 * 8 7 6 10 10 C 1.53239 * 109.36246 * 172.76085 * 9 8 7 11 11 H 1.09006 * 109.62903 * 294.11353 * 10 9 8 12 12 C 1.52991 * 109.63183 * 173.52747 * 10 9 8 13 13 N 1.47087 * 108.52019 * 53.81524 * 10 9 8 14 14 C 1.36939 * 120.87711 * 128.79105 * 13 10 9 15 15 H 1.07997 * 120.00301 * 333.38540 * 14 13 10 16 16 C 1.38817 * 119.99577 * 153.38406 * 14 13 10 17 17 N 1.31617 * 119.99771 * 343.02094 * 16 14 13 18 18 Si 1.86798 * 119.99957 * 163.02867 * 16 14 13 19 19 H 1.48497 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47181 * 119.99579 * 18 16 14 21 21 H 1.48503 * 109.47134 * 239.99853 * 18 16 14 22 22 C 1.47076 * 118.23956 * 308.81827 * 13 10 9 23 23 H 1.09001 * 109.62960 * 170.88912 * 22 13 10 24 24 C 1.53004 * 109.62866 * 291.47535 * 22 13 10 25 25 C 1.46899 * 111.01758 * 45.68043 * 8 7 6 26 26 H 1.08995 * 109.47141 * 270.00718 * 1 2 3 27 27 H 1.08998 * 109.46625 * 30.00399 * 1 2 3 28 28 H 1.08991 * 109.47188 * 150.00357 * 1 2 3 29 29 H 1.08999 * 109.47276 * 149.68547 * 7 6 5 30 30 H 1.09000 * 109.47281 * 29.68689 * 7 6 5 31 31 H 1.08996 * 109.49441 * 52.79037 * 9 8 7 32 32 H 1.08995 * 109.49517 * 292.73715 * 9 8 7 33 33 H 1.08999 * 109.47512 * 59.99919 * 12 10 9 34 34 H 1.09001 * 109.47523 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47295 * 300.00418 * 12 10 9 36 36 H 0.97008 * 120.00248 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47389 * 59.99886 * 24 22 13 38 38 H 1.09001 * 109.46719 * 180.02562 * 24 22 13 39 39 H 1.09002 * 109.46832 * 299.99770 * 24 22 13 40 40 H 1.09001 * 109.46932 * 67.26685 * 25 8 7 41 41 H 1.08994 * 109.51481 * 307.21680 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6083 0.6246 -0.0006 5 7 3.5710 -0.7936 0.0044 6 6 2.3213 -1.1499 -0.0005 7 6 1.8209 -2.5714 0.0000 8 7 1.6573 -3.0334 -1.3849 9 6 1.4009 -4.4790 -1.4307 10 6 1.0581 -4.8889 -2.8670 11 1 0.1130 -4.4331 -3.1622 12 6 0.9482 -6.4124 -2.9544 13 7 2.1319 -4.4192 -3.7557 14 6 2.7365 -5.2728 -4.6395 15 1 2.7689 -6.3320 -4.4311 16 6 3.3076 -4.7767 -5.8034 17 7 2.9920 -3.5721 -6.2296 18 14 4.5239 -5.8187 -6.7647 19 1 4.7078 -7.1233 -6.0797 20 1 4.0032 -6.0484 -8.1364 21 1 5.8280 -5.1126 -6.8421 22 6 2.5394 -3.0087 -3.6697 23 1 3.4404 -2.8510 -4.2625 24 6 1.4125 -2.1153 -4.1922 25 6 2.8238 -2.6729 -2.2018 26 1 -0.3633 0.0001 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5137 29 1 0.8611 -2.6186 0.5145 30 1 2.5401 -3.2096 0.5133 31 1 0.5653 -4.7212 -0.7742 32 1 2.2899 -5.0168 -1.1013 33 1 0.1635 -6.7592 -2.2820 34 1 0.7048 -6.7011 -3.9769 35 1 1.8983 -6.8624 -2.6665 36 1 3.3914 -3.2251 -7.0427 37 1 0.5170 -2.2707 -3.5906 38 1 1.7174 -1.0708 -4.1277 39 1 1.2006 -2.3681 -5.2311 40 1 3.6933 -3.2354 -1.8618 41 1 3.0205 -1.6053 -2.1044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878773418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:32 Heat of formation + Delta-G solvation = 108.545021 kcal Electronic energy + Delta-G solvation = -23372.832065 eV Core-core repulsion = 20099.475950 eV Total energy + Delta-G solvation = -3273.356115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -42.60400 -40.14172 -36.91617 -35.15707 -34.42002 -33.79363 -32.96750 -29.90723 -29.58891 -28.36379 -27.58688 -26.01988 -24.11743 -23.08080 -22.50648 -21.33683 -20.36071 -18.17310 -17.75403 -17.55557 -16.91637 -16.28276 -16.10243 -15.81363 -15.65513 -15.21860 -15.06134 -14.69079 -14.54238 -14.16239 -13.70671 -13.62935 -13.38543 -13.14090 -12.91642 -12.84700 -12.82010 -12.75044 -12.48469 -12.37553 -12.28080 -12.17292 -11.89354 -11.83422 -11.61224 -11.60399 -11.26291 -11.02591 -10.46997 -9.35919 -8.55125 -7.78442 -5.19853 -0.54186 0.93729 1.44407 1.48413 1.55196 1.55894 2.10474 2.53938 2.84443 2.97873 3.36486 3.60073 3.65774 3.99169 4.17467 4.23552 4.29904 4.37305 4.50879 4.57894 4.61828 4.67463 4.73548 4.75350 4.85301 4.91925 4.92971 4.94685 5.09739 5.20681 5.22556 5.29136 5.50599 5.58813 5.69495 5.76368 5.86996 5.95087 6.04515 6.14347 6.47919 7.24484 7.96891 8.48169 9.26724 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.005485 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.459033 B = 5103.401215 C = 5638.652295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.106 3.894 3 N -0.310 5.310 4 O -0.021 6.021 5 N -0.301 5.301 6 C 0.095 3.905 7 C 0.114 3.886 8 N -0.518 5.518 9 C 0.057 3.943 10 C 0.162 3.838 11 H 0.031 0.969 12 C -0.129 4.129 13 N -0.601 5.601 14 C -0.245 4.245 15 H 0.075 0.925 16 C -0.053 4.053 17 N -0.924 5.924 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.296 1.296 21 H -0.301 1.301 22 C 0.199 3.801 23 H 0.047 0.953 24 C -0.114 4.114 25 C 0.059 3.941 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.025 0.975 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.242 0.758 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.038 0.962 40 H 0.009 0.991 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 1.180 15.575 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 N -0.059 5.059 4 O -0.154 6.154 5 N -0.048 5.048 6 C -0.089 4.089 7 C -0.014 4.014 8 N -0.243 5.243 9 C -0.072 4.072 10 C 0.056 3.944 11 H 0.048 0.952 12 C -0.187 4.187 13 N -0.324 5.324 14 C -0.375 4.375 15 H 0.093 0.907 16 C -0.248 4.248 17 N -0.571 5.571 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.223 1.223 21 H -0.229 1.229 22 C 0.091 3.909 23 H 0.065 0.935 24 C -0.173 4.173 25 C -0.071 4.071 26 H 0.146 0.854 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.175 0.825 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.653 2.308 15.265 17.698 hybrid contribution 1.605 -0.804 -0.981 2.046 sum -7.048 1.505 14.284 15.999 Atomic orbital electron populations 1.20900 0.80473 1.06819 1.06748 1.25294 1.02265 0.87430 0.92697 1.79878 0.88537 1.20925 1.16607 1.93352 1.21983 1.14038 1.86002 1.79962 1.19661 0.91168 1.14017 1.24939 0.89161 1.00468 0.94354 1.21193 1.03964 0.84444 0.91779 1.62171 1.37952 1.16580 1.07646 1.22678 1.00936 0.84995 0.98548 1.20747 0.90507 0.94086 0.89021 0.95162 1.21716 1.01235 0.94473 1.01316 1.44518 1.39451 1.06360 1.42101 1.19509 1.28963 0.91461 0.97604 0.90705 1.25637 1.03273 0.98192 0.97712 1.70174 1.45032 1.18823 1.23090 0.85434 0.79092 0.78860 0.78447 1.19191 1.22307 1.22865 1.20175 0.96593 0.83967 0.90120 0.93510 1.21700 0.98956 0.96052 1.00568 1.22522 0.90647 0.97811 0.96109 0.85401 0.88919 0.86468 0.82528 0.91743 0.86521 0.95641 0.89823 0.94094 0.93747 0.94822 0.92881 0.96166 0.94242 0.97313 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.05 71.24 0.72 -0.38 16 2 C 0.11 2.43 7.19 43.49 0.31 2.74 16 3 N -0.31 -9.18 12.98 -47.15 -0.61 -9.79 16 4 O -0.02 -0.74 13.71 70.17 0.96 0.23 16 5 N -0.30 -9.93 12.01 -47.15 -0.57 -10.49 16 6 C 0.09 2.43 4.97 43.49 0.22 2.65 16 7 C 0.11 2.33 5.44 85.56 0.47 2.79 16 8 N -0.52 -14.66 4.26 -899.85 -3.83 -18.49 16 9 C 0.06 1.56 4.87 86.38 0.42 1.98 16 10 C 0.16 5.81 3.26 44.96 0.15 5.95 16 11 H 0.03 1.14 7.63 -2.38 -0.02 1.12 16 12 C -0.13 -4.12 7.93 71.98 0.57 -3.55 16 13 N -0.60 -28.06 2.73 -650.62 -1.78 -29.84 16 14 C -0.24 -12.80 8.72 84.03 0.73 -12.07 16 15 H 0.08 3.79 6.16 -2.91 -0.02 3.77 16 16 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 17 N -0.92 -53.71 9.78 21.65 0.21 -53.50 16 18 Si 0.95 45.13 29.59 68.60 2.03 47.16 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 C 0.20 9.31 2.35 44.96 0.11 9.41 16 23 H 0.05 2.65 6.12 -2.39 -0.01 2.63 16 24 C -0.11 -5.10 8.96 71.98 0.64 -4.46 16 25 C 0.06 2.28 4.52 86.38 0.39 2.67 16 26 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.12 1.18 7.77 -2.39 -0.02 1.17 16 29 H 0.16 1.64 7.78 -2.39 -0.02 1.63 16 30 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.12 2.13 8.11 -2.39 -0.02 2.11 16 32 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 35 H 0.04 1.47 7.54 -2.38 -0.02 1.45 16 36 H 0.24 13.96 8.31 -92.70 -0.77 13.19 16 37 H 0.05 2.12 7.08 -2.39 -0.02 2.11 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.04 2.04 6.90 -2.39 -0.02 2.02 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.05 1.94 5.89 -2.39 -0.01 1.92 16 Total: -1.00 -69.23 323.38 2.58 -66.65 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.02 Total: 2.83 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.14 Total: 5.25 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.58 Total: -122.11 kcal Atomic # 8 Polarization: -0.74 SS G_CDS: 0.96 Total: 0.23 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.23 2.58 -66.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.197 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds