Wall clock time and date at job start Tue Mar 31 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47356 * 2 1 4 4 H 1.09000 * 109.47476 * 54.99898 * 3 2 1 5 5 C 1.52997 * 109.47404 * 174.99986 * 3 2 1 6 6 O 1.42905 * 109.47264 * 54.99769 * 5 3 2 7 7 N 1.46500 * 109.46849 * 295.00050 * 3 2 1 8 8 C 1.38632 * 120.00281 * 155.00032 * 7 3 2 9 9 C 1.39168 * 120.48034 * 359.72322 * 8 7 3 10 10 C 1.39135 * 118.26505 * 179.73852 * 9 8 7 11 11 N 1.38637 * 120.48288 * 180.25869 * 10 9 8 12 12 C 1.46502 * 119.99603 * 185.27899 * 11 10 9 13 13 C 1.46497 * 119.99916 * 5.27744 * 11 10 9 14 14 C 1.50700 * 109.47233 * 90.00485 * 13 11 10 15 15 H 1.08006 * 119.99643 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00357 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99756 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00195 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46891 * 89.99651 * 18 16 14 20 20 H 1.48497 * 109.46778 * 209.99704 * 18 16 14 21 21 H 1.48497 * 109.47011 * 329.99924 * 18 16 14 22 22 N 1.33192 * 119.02975 * 0.53042 * 10 9 8 23 23 C 1.31725 * 120.88139 * 359.73198 * 22 10 9 24 24 N 1.31759 * 121.91221 * 359.97438 * 23 22 10 25 25 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47164 * 300.00254 * 1 2 3 27 27 H 1.08994 * 109.46887 * 60.00154 * 1 2 3 28 28 H 1.08996 * 109.47164 * 239.99746 * 2 1 3 29 29 H 1.09004 * 109.46936 * 119.99951 * 2 1 3 30 30 H 1.09001 * 109.47289 * 294.99602 * 5 3 2 31 31 H 1.09004 * 109.47261 * 174.99858 * 5 3 2 32 32 H 0.96691 * 114.00079 * 179.97438 * 6 5 3 33 33 H 0.97000 * 120.00260 * 334.99576 * 7 3 2 34 34 H 1.07998 * 120.87146 * 359.97438 * 9 8 7 35 35 H 1.08993 * 109.46971 * 90.00091 * 12 11 10 36 36 H 1.08996 * 109.46841 * 209.99908 * 12 11 10 37 37 H 1.08999 * 109.47030 * 329.99818 * 12 11 10 38 38 H 1.09008 * 109.46674 * 209.99664 * 13 11 10 39 39 H 1.08996 * 109.47420 * 329.99833 * 13 11 10 40 40 H 0.96999 * 119.99918 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.04315 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 4.1294 0.6403 -0.9121 7 7 1.6525 2.0974 -1.2518 8 6 1.5220 3.4767 -1.3011 9 6 1.7513 4.2484 -0.1659 10 6 1.6126 5.6290 -0.2687 11 7 1.8352 6.4421 0.8319 12 6 1.5747 7.8811 0.7441 13 6 2.3308 5.8623 2.0827 14 6 3.8377 5.8793 2.0818 15 1 4.3727 6.2815 1.2341 16 6 4.5334 5.3816 3.1631 17 7 3.8819 4.8924 4.1955 18 14 6.4013 5.4021 3.1618 19 1 6.8827 6.6761 3.7539 20 1 6.9094 4.2603 3.9637 21 1 6.8966 5.2864 1.7666 22 7 1.2576 6.1576 -1.4386 23 6 1.0441 5.3923 -2.4893 24 7 1.1706 4.0820 -2.4339 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8499 1.0377 1.0961 31 1 3.9356 2.4654 0.0366 32 1 5.0951 0.5962 -0.8941 33 1 1.4871 1.5660 -2.0463 34 1 2.0332 3.7880 0.7695 35 1 0.5431 8.0818 1.0332 36 1 2.2499 8.4140 1.4135 37 1 1.7372 8.2179 -0.2797 38 1 1.9613 6.4466 2.9255 39 1 1.9791 4.8344 2.1712 40 1 4.3713 4.5426 4.9564 41 1 0.7570 5.8524 -3.4233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891401021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:11 Heat of formation + Delta-G solvation = 2.262395 kcal Electronic energy + Delta-G solvation = -22704.789534 eV Core-core repulsion = 19426.824659 eV Total energy + Delta-G solvation = -3277.964875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.18613 -38.04420 -36.34980 -35.39036 -33.26159 -32.66691 -31.03301 -29.68541 -28.37553 -27.72534 -25.31744 -23.82661 -23.47145 -22.52505 -20.68934 -20.34330 -17.71379 -17.18885 -16.73765 -16.56993 -15.38490 -15.05664 -14.74877 -14.62744 -14.37268 -14.23527 -13.98007 -13.79378 -13.23835 -13.20248 -13.02241 -12.47673 -12.23030 -12.17895 -11.51363 -11.49876 -11.33695 -11.07937 -11.00291 -10.83200 -10.75829 -10.50921 -10.28097 -9.95490 -9.83127 -9.64835 -9.33775 -8.60557 -8.46901 -7.65593 -6.94655 -6.18260 -4.27555 2.00017 2.36636 3.17974 3.25387 3.29539 3.42274 3.89595 4.30339 4.41562 4.74833 4.79109 4.98660 5.08872 5.11789 5.17655 5.39354 5.56981 5.62215 5.64882 5.74547 5.82423 5.97022 6.03013 6.08066 6.16063 6.16657 6.25279 6.30888 6.39385 6.45028 6.75635 6.98474 7.15846 7.34913 7.58834 7.72811 7.77088 7.99306 8.04774 8.31491 8.37585 8.79834 9.13574 9.39452 10.85327 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011737 B = 0.007279 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.115089 B = 3845.665541 C = 5308.712628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.160 3.840 4 H 0.098 0.902 5 C 0.056 3.944 6 O -0.571 6.571 7 N -0.705 5.705 8 C 0.452 3.548 9 C -0.352 4.352 10 C 0.466 3.534 11 N -0.582 5.582 12 C 0.102 3.898 13 C 0.251 3.749 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.622 5.622 23 C 0.361 3.639 24 N -0.629 5.629 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.375 0.625 33 H 0.402 0.598 34 H 0.141 0.859 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.265 0.735 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 -6.643 -6.858 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.054 3.946 4 H 0.115 0.885 5 C -0.023 4.023 6 O -0.376 6.376 7 N -0.337 5.337 8 C 0.213 3.787 9 C -0.385 4.385 10 C 0.225 3.775 11 N -0.290 5.290 12 C -0.042 4.042 13 C 0.131 3.869 14 C -0.570 4.570 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.199 1.199 22 N -0.352 5.352 23 C 0.068 3.932 24 N -0.360 5.360 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.237 0.763 34 H 0.159 0.841 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.704 -6.330 -7.174 10.662 hybrid contribution 1.986 -0.390 0.841 2.192 sum -2.718 -6.721 -6.334 9.627 Atomic orbital electron populations 1.21786 0.95534 1.01331 1.02352 1.21665 0.95978 0.95152 1.03331 1.21092 0.92327 0.93704 0.87509 0.88468 1.22789 0.94325 0.95299 0.89921 1.86401 1.25038 1.72289 1.53836 1.44228 1.74505 1.02260 1.12722 1.18139 0.86652 0.85076 0.88816 1.21373 1.22836 0.93523 1.00806 1.18233 0.85351 0.87658 0.86238 1.46955 1.65212 1.06211 1.10649 1.21445 0.99169 0.81194 1.02392 1.19392 0.94070 0.94628 0.78816 1.21521 0.91326 1.40971 1.03208 0.92247 1.24921 0.98697 0.94996 0.95216 1.69925 1.35734 1.40697 1.06786 0.86550 0.85286 0.77857 0.78138 1.20427 1.21029 1.19888 1.67893 1.26712 1.40930 0.99693 1.24043 0.88821 0.84759 0.95533 1.67804 1.28109 1.12895 1.27202 0.92839 0.92605 0.92458 0.90703 0.90645 0.92764 0.92218 0.77849 0.76268 0.84104 0.94479 0.91659 0.91257 0.94497 0.94497 0.92564 0.80104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.80 37.16 0.36 -1.29 16 2 C -0.12 -1.42 5.19 -26.73 -0.14 -1.56 16 3 C 0.16 2.26 2.07 -67.94 -0.14 2.12 16 4 H 0.10 1.50 6.50 -51.93 -0.34 1.16 16 5 C 0.06 0.82 6.82 37.16 0.25 1.07 16 6 O -0.57 -7.62 12.83 -35.23 -0.45 -8.07 16 7 N -0.70 -10.87 4.63 -53.85 -0.25 -11.12 16 8 C 0.45 8.38 7.68 -154.71 -1.19 7.19 16 9 C -0.35 -7.23 8.11 -38.90 -0.32 -7.55 16 10 C 0.47 10.02 7.38 -154.70 -1.14 8.88 16 11 N -0.58 -12.73 2.96 -183.00 -0.54 -13.27 16 12 C 0.10 1.90 10.51 59.85 0.63 2.52 16 13 C 0.25 6.09 5.03 -5.20 -0.03 6.07 16 14 C -0.53 -14.01 9.39 -34.44 -0.32 -14.33 16 15 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 18 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 N -0.62 -12.36 9.22 -13.88 -0.13 -12.49 16 23 C 0.36 6.36 12.28 -92.24 -1.13 5.23 16 24 N -0.63 -11.57 10.47 -13.88 -0.15 -11.72 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 28 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 32 H 0.38 3.66 9.12 45.56 0.42 4.07 16 33 H 0.40 5.83 8.73 -40.82 -0.36 5.47 16 34 H 0.14 3.02 4.42 -52.49 -0.23 2.78 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 37 H 0.07 1.25 7.33 -51.93 -0.38 0.87 16 38 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 39 H 0.04 0.93 6.04 -51.93 -0.31 0.62 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 41 H 0.18 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -29.69 340.45 -9.26 -38.96 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.33 Total: 10.69 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -3.26 Total: 9.94 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -0.33 Total: -72.14 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.45 Total: -8.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.69 -9.26 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891401021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.220 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds