Wall clock time and date at job start Tue Mar 31 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09006 * 109.47396 * 55.00290 * 3 2 1 5 5 C 1.53003 * 109.46992 * 174.99670 * 3 2 1 6 6 O 1.42900 * 109.46836 * 55.00103 * 5 3 2 7 7 N 1.46494 * 109.47140 * 295.00115 * 3 2 1 8 8 C 1.38628 * 120.00089 * 155.00245 * 7 3 2 9 9 C 1.39178 * 120.48524 * 359.97438 * 8 7 3 10 10 C 1.39127 * 118.26559 * 179.97438 * 9 8 7 11 11 N 1.38633 * 120.48288 * 180.02562 * 10 9 8 12 12 C 1.46509 * 119.99947 * 0.02562 * 11 10 9 13 13 C 1.52995 * 109.47271 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47042 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99597 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00065 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99664 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46828 * 59.99916 * 18 16 14 20 20 H 1.48492 * 109.47193 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47176 * 300.00080 * 18 16 14 22 22 N 1.33200 * 119.03377 * 0.02562 * 10 9 8 23 23 C 1.31721 * 120.87757 * 359.97438 * 22 10 9 24 24 N 1.31752 * 121.91723 * 359.73869 * 23 22 10 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 30 30 H 1.09003 * 109.46731 * 175.00388 * 5 3 2 31 31 H 1.08994 * 109.47146 * 295.00174 * 5 3 2 32 32 H 0.96703 * 113.99668 * 179.97438 * 6 5 3 33 33 H 0.97003 * 120.00205 * 334.99223 * 7 3 2 34 34 H 1.07991 * 120.86501 * 0.02562 * 9 8 7 35 35 H 0.96996 * 120.00572 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.46706 * 300.00203 * 12 11 10 37 37 H 1.09000 * 109.46923 * 59.99514 * 12 11 10 38 38 H 1.09009 * 109.47006 * 299.99676 * 13 12 11 39 39 H 1.08996 * 109.47071 * 59.99388 * 13 12 11 40 40 H 0.97002 * 119.99450 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.04036 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5649 1.4443 0.1258 6 8 4.1294 0.6403 -0.9120 7 7 1.6525 2.0974 -1.2517 8 6 1.5221 3.4767 -1.3009 9 6 1.7564 4.2489 -0.1670 10 6 1.6127 5.6290 -0.2685 11 7 1.8353 6.4421 0.8321 12 6 2.2255 5.8493 2.1138 13 6 2.4064 6.9567 3.1539 14 6 2.8084 6.3470 4.4721 15 1 2.9230 5.2767 4.5594 16 6 3.0299 7.1557 5.5667 17 7 2.8908 8.4591 5.4601 18 14 3.5275 6.3999 7.2009 19 1 4.8052 5.6613 7.0360 20 1 3.7032 7.4747 8.2103 21 1 2.4691 5.4627 7.6555 22 7 1.2581 6.1577 -1.4385 23 6 1.0451 5.3925 -2.4893 24 7 1.1762 4.0827 -2.4352 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.9356 2.4654 0.0368 31 1 3.8499 1.0376 1.0961 32 1 5.0952 0.5961 -0.8940 33 1 1.4872 1.5661 -2.0463 34 1 2.0432 3.7889 0.7671 35 1 1.7327 7.4034 0.7537 36 1 1.4487 5.1614 2.4474 37 1 3.1634 5.3072 1.9929 38 1 3.1831 7.6450 2.8205 39 1 1.4683 7.4985 3.2746 40 1 3.0463 9.0279 6.2303 41 1 0.7583 5.8526 -3.4234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893129078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:31 Heat of formation + Delta-G solvation = -13.970388 kcal Electronic energy + Delta-G solvation = -21746.726404 eV Core-core repulsion = 18468.057623 eV Total energy + Delta-G solvation = -3278.668781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55194 -38.37112 -36.40407 -35.71228 -33.64655 -33.09118 -31.48407 -30.02795 -28.72666 -28.54858 -25.06387 -23.95561 -23.43708 -22.13226 -21.19348 -20.58884 -18.23533 -17.51590 -17.37826 -16.37807 -15.76580 -15.18229 -15.10175 -14.87148 -14.64607 -14.59980 -14.27441 -14.02551 -13.76171 -13.64777 -13.44613 -12.80463 -12.52447 -12.31987 -11.89814 -11.44274 -11.33631 -11.24685 -11.09434 -10.92975 -10.72737 -10.49919 -10.23496 -10.12619 -9.84711 -9.71385 -9.40341 -8.84408 -8.50948 -8.03586 -7.60824 -6.15622 -4.19971 1.59981 1.97931 3.07403 3.24439 3.29691 3.30688 3.61343 4.06438 4.34979 4.37525 4.47791 4.69586 4.77749 4.92184 5.07274 5.21236 5.21831 5.26966 5.31176 5.46850 5.47402 5.64982 5.74902 5.80513 5.85658 5.92071 6.07231 6.09675 6.12971 6.46556 6.55927 6.96502 7.12357 7.40431 7.44248 7.53396 7.62860 7.80002 7.91176 8.07554 8.23358 8.77647 8.85416 9.45057 10.95868 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.004275 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.034487 B = 6547.426974 C = 7861.940232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.156 3.844 4 H 0.097 0.903 5 C 0.056 3.944 6 O -0.568 6.568 7 N -0.702 5.702 8 C 0.460 3.540 9 C -0.368 4.368 10 C 0.462 3.538 11 N -0.702 5.702 12 C 0.128 3.872 13 C 0.013 3.987 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 N -0.619 5.619 23 C 0.370 3.630 24 N -0.624 5.624 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.377 0.623 33 H 0.405 0.595 34 H 0.134 0.866 35 H 0.405 0.595 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -14.763 -11.860 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.115 0.885 5 C -0.023 4.023 6 O -0.373 6.373 7 N -0.334 5.334 8 C 0.220 3.780 9 C -0.401 4.401 10 C 0.220 3.780 11 N -0.331 5.331 12 C 0.005 3.995 13 C -0.024 4.024 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 N -0.348 5.348 23 C 0.078 3.922 24 N -0.354 5.354 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.224 0.776 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.241 0.759 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.924 -14.430 -12.259 19.032 hybrid contribution 1.070 -0.340 1.617 1.969 sum -0.854 -14.770 -10.642 18.225 Atomic orbital electron populations 1.21798 0.95322 1.01634 1.02402 1.21673 0.96176 0.94772 1.03551 1.21156 0.92272 0.94143 0.87446 0.88486 1.22778 0.94376 0.94877 0.90278 1.86441 1.25251 1.72091 1.53504 1.44301 1.73968 1.02222 1.12936 1.18152 0.85971 0.85161 0.88718 1.21227 1.24622 0.93495 1.00796 1.18352 0.85193 0.87838 0.86619 1.45085 1.70991 1.09130 1.07848 1.21818 0.98097 0.98610 0.81001 1.19298 0.97996 0.93045 0.92101 1.20941 1.47681 0.93447 0.94320 0.92384 1.24995 0.95193 0.94803 0.99168 1.69944 1.48723 1.03292 1.30958 0.86580 0.79139 0.78808 0.83038 1.20126 1.21163 1.20105 1.67960 1.26053 1.41072 0.99734 1.24188 0.87846 0.84594 0.95586 1.67879 1.27726 1.12921 1.26915 0.92420 0.92607 0.92544 0.90482 0.90527 0.92875 0.92604 0.77593 0.75891 0.84864 0.75902 0.92829 0.92900 0.95754 0.95732 0.92659 0.79521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.80 37.16 0.36 -0.95 16 2 C -0.12 -1.06 5.19 -26.73 -0.14 -1.19 16 3 C 0.16 1.60 2.07 -67.93 -0.14 1.46 16 4 H 0.10 1.05 6.51 -51.93 -0.34 0.71 16 5 C 0.06 0.56 6.81 37.16 0.25 0.81 16 6 O -0.57 -5.44 12.83 -35.23 -0.45 -5.89 16 7 N -0.70 -8.40 4.63 -53.84 -0.25 -8.65 16 8 C 0.46 6.87 7.68 -154.71 -1.19 5.69 16 9 C -0.37 -5.90 8.16 -38.90 -0.32 -6.22 16 10 C 0.46 8.16 7.70 -154.70 -1.19 6.96 16 11 N -0.70 -12.77 5.71 -60.33 -0.34 -13.11 16 12 C 0.13 2.49 4.86 -4.04 -0.02 2.47 16 13 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 14 C -0.53 -13.90 9.11 -34.44 -0.31 -14.22 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 N -0.62 -10.56 10.47 -13.89 -0.15 -10.70 16 23 C 0.37 5.50 12.28 -92.25 -1.13 4.37 16 24 N -0.62 -9.59 10.47 -13.88 -0.15 -9.74 16 25 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.68 7.73 -51.93 -0.40 0.28 16 30 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.38 2.22 9.12 45.56 0.42 2.64 16 33 H 0.41 4.64 8.73 -40.82 -0.36 4.29 16 34 H 0.13 2.03 5.13 -52.49 -0.27 1.76 16 35 H 0.41 7.29 8.60 -40.82 -0.35 6.94 16 36 H 0.05 1.03 7.97 -51.93 -0.41 0.61 16 37 H 0.05 1.01 7.97 -51.93 -0.41 0.59 16 38 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 342.74 15.07 5.16 5.16 Total: -1.00 -30.72 342.74 -9.96 -40.68 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.44 Total: 10.64 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.06 Total: 0.92 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.15 Total: -67.11 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.45 Total: -5.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.72 -9.96 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893129078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.709 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds