Wall clock time and date at job start Tue Mar 31 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 O 1.42898 * 109.47527 * 305.00315 * 5 3 2 7 7 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 8 8 C 1.38628 * 120.00309 * 205.00123 * 7 3 2 9 9 C 1.39174 * 120.48447 * 359.72393 * 8 7 3 10 10 C 1.39132 * 118.27039 * 179.73793 * 9 8 7 11 11 N 1.38627 * 120.48443 * 180.26213 * 10 9 8 12 12 C 1.46492 * 120.00283 * 0.27481 * 11 10 9 13 13 C 1.53006 * 109.47298 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47031 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99822 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99821 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00266 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47247 * 89.99940 * 18 16 14 20 20 H 1.48503 * 109.47009 * 209.99439 * 18 16 14 21 21 H 1.48493 * 109.47280 * 329.99864 * 18 16 14 22 22 N 1.33194 * 119.02371 * 0.53314 * 10 9 8 23 23 C 1.31720 * 120.88858 * 359.73035 * 22 10 9 24 24 N 1.31760 * 121.91212 * 359.97438 * 23 22 10 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 31 31 H 1.09009 * 109.47234 * 184.99747 * 5 3 2 32 32 H 0.96703 * 114.00402 * 179.97438 * 6 5 3 33 33 H 0.97003 * 120.00235 * 25.00789 * 7 3 2 34 34 H 1.08004 * 120.86466 * 359.97438 * 9 8 7 35 35 H 0.97003 * 119.99750 * 180.27835 * 11 10 9 36 36 H 1.08997 * 109.47474 * 300.00132 * 12 11 10 37 37 H 1.09003 * 109.46914 * 60.00201 * 12 11 10 38 38 H 1.08997 * 109.46941 * 300.00428 * 13 12 11 39 39 H 1.08994 * 109.46890 * 60.00081 * 13 12 11 40 40 H 0.97000 * 120.00159 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.05297 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 8 4.1294 0.6403 0.9121 7 7 1.6525 2.0974 1.2518 8 6 1.5221 3.4766 1.3010 9 6 1.7624 4.2494 0.1688 10 6 1.6125 5.6290 0.2685 11 7 1.8350 6.4420 -0.8321 12 6 2.2251 5.8493 -2.1137 13 6 2.4071 6.9569 -3.1535 14 6 2.8079 6.3471 -4.4721 15 1 2.9210 5.2766 -4.5597 16 6 3.0300 7.1557 -5.5664 17 7 3.3803 6.6237 -6.7170 18 14 2.8349 9.0073 -5.4145 19 1 4.1323 9.6108 -5.0169 20 1 2.4076 9.5689 -6.7211 21 1 1.8100 9.3142 -4.3847 22 7 1.2574 6.1575 1.4384 23 6 1.0441 5.3924 2.4892 24 7 1.1699 4.0820 2.4337 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0377 -1.0960 31 1 3.9356 2.4654 -0.0366 32 1 5.0952 0.5955 0.8937 33 1 1.4872 1.5660 2.0463 34 1 2.0540 3.7898 -0.7641 35 1 1.7323 7.4034 -0.7535 36 1 3.1630 5.3073 -1.9928 37 1 1.4483 5.1613 -2.4473 38 1 1.4694 7.4993 -3.2744 39 1 3.1840 7.6445 -2.8197 40 1 3.5369 7.1927 -7.4868 41 1 0.7577 5.8524 3.4234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893129079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:42 Heat of formation + Delta-G solvation = -10.181547 kcal Electronic energy + Delta-G solvation = -21775.342521 eV Core-core repulsion = 18496.838036 eV Total energy + Delta-G solvation = -3278.504485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 5.05 seconds Orbital eigenvalues (eV) -40.60769 -38.38323 -36.50949 -35.73573 -33.66911 -33.06491 -31.61348 -30.22207 -29.02948 -28.55783 -25.22945 -23.95256 -23.39548 -22.14861 -21.08899 -20.52885 -18.27343 -17.57485 -17.39823 -16.81967 -15.79615 -15.21954 -15.16092 -14.90235 -14.70742 -14.45679 -14.27303 -13.95594 -13.88818 -13.75507 -13.48906 -12.81627 -12.67095 -12.51597 -11.98016 -11.62710 -11.53252 -11.30794 -11.09983 -10.92862 -10.52362 -10.30759 -10.21749 -10.14322 -10.00877 -9.88034 -9.43796 -8.90575 -8.68693 -8.08120 -7.69347 -6.19119 -4.19953 1.54509 1.91832 3.04729 3.22045 3.30441 3.32422 3.51174 4.06842 4.32410 4.32475 4.47872 4.64430 4.78092 4.92716 5.03695 5.14741 5.21542 5.24425 5.30275 5.46043 5.47818 5.64845 5.74472 5.75240 5.81003 5.89850 5.95018 5.99589 6.09792 6.37705 6.39349 6.86068 6.93960 7.12626 7.15008 7.41773 7.54887 7.61395 7.80956 8.03728 8.34085 8.71488 8.82513 9.41468 10.93540 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.004210 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.159705 B = 6648.749504 C = 7773.133333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.155 3.845 4 H 0.098 0.902 5 C 0.056 3.944 6 O -0.568 6.568 7 N -0.701 5.701 8 C 0.461 3.539 9 C -0.366 4.366 10 C 0.463 3.537 11 N -0.707 5.707 12 C 0.136 3.864 13 C -0.022 4.022 14 C -0.525 4.525 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.265 1.265 22 N -0.619 5.619 23 C 0.370 3.630 24 N -0.623 5.623 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.378 0.622 33 H 0.405 0.595 34 H 0.135 0.865 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.266 0.734 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -10.734 15.045 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.116 0.884 5 C -0.023 4.023 6 O -0.373 6.373 7 N -0.333 5.333 8 C 0.221 3.779 9 C -0.400 4.400 10 C 0.221 3.779 11 N -0.336 5.336 12 C 0.013 3.987 13 C -0.060 4.060 14 C -0.563 4.563 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.190 1.190 22 N -0.349 5.349 23 C 0.078 3.922 24 N -0.353 5.353 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.224 0.776 33 H 0.241 0.759 34 H 0.153 0.847 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.089 -10.546 15.357 18.884 hybrid contribution 0.763 0.931 -0.778 1.433 sum -2.327 -9.615 14.579 17.618 Atomic orbital electron populations 1.21799 0.95327 1.01663 1.02375 1.21672 0.96172 0.94737 1.03608 1.21172 0.92334 0.94195 0.87348 0.88433 1.22777 0.94296 0.94872 0.90369 1.86435 1.25284 1.72118 1.53484 1.44328 1.73789 1.02191 1.13011 1.18156 0.85883 0.85219 0.88682 1.21257 1.24299 0.93480 1.00980 1.18302 0.85279 0.87807 0.86545 1.45027 1.71558 1.09012 1.07960 1.21597 0.98856 0.97858 0.80382 1.19777 0.97270 0.94478 0.94456 1.20848 1.47549 0.95723 0.92170 0.90683 1.24968 0.94198 0.98817 0.95087 1.69889 1.46726 1.35843 1.01086 0.86773 0.79048 0.85731 0.77715 1.20152 1.21189 1.18985 1.67940 1.26117 1.41118 0.99714 1.24190 0.87839 0.84594 0.95555 1.67889 1.27530 1.12903 1.26962 0.92514 0.92468 0.92582 0.90528 0.90395 0.92473 0.92902 0.77563 0.75856 0.84723 0.76102 0.92302 0.92203 0.95771 0.96225 0.92462 0.79491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.80 37.16 0.36 -0.96 16 2 C -0.12 -1.07 5.19 -26.74 -0.14 -1.21 16 3 C 0.16 1.60 2.06 -67.93 -0.14 1.46 16 4 H 0.10 1.06 6.52 -51.93 -0.34 0.72 16 5 C 0.06 0.56 6.80 37.16 0.25 0.82 16 6 O -0.57 -5.46 12.83 -35.23 -0.45 -5.92 16 7 N -0.70 -8.28 4.63 -53.84 -0.25 -8.53 16 8 C 0.46 6.73 7.68 -154.71 -1.19 5.54 16 9 C -0.37 -5.72 8.14 -38.90 -0.32 -6.04 16 10 C 0.46 7.83 7.70 -154.70 -1.19 6.64 16 11 N -0.71 -12.10 5.71 -60.34 -0.34 -12.44 16 12 C 0.14 2.53 4.86 -4.04 -0.02 2.51 16 13 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 14 C -0.52 -14.01 9.66 -34.44 -0.33 -14.34 16 15 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -26.49 13.96 55.43 0.77 -25.72 16 18 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 22 N -0.62 -10.14 10.47 -13.89 -0.15 -10.29 16 23 C 0.37 5.32 12.28 -92.25 -1.13 4.18 16 24 N -0.62 -9.32 10.47 -13.88 -0.15 -9.47 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.61 7.79 -51.92 -0.40 0.21 16 32 H 0.38 2.25 9.12 45.56 0.42 2.66 16 33 H 0.41 4.58 8.73 -40.82 -0.36 4.23 16 34 H 0.14 2.01 5.13 -52.48 -0.27 1.74 16 35 H 0.40 6.66 8.60 -40.82 -0.35 6.31 16 36 H 0.06 1.09 7.96 -51.93 -0.41 0.67 16 37 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 38 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 39 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -31.19 339.10 -9.58 -40.77 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.40 Total: 10.45 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.06 Total: -0.10 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.11 Total: -66.44 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.45 Total: -5.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.19 -9.58 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893129079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.589 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.05 seconds