Wall clock time and date at job start Tue Mar 31 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 H 1.09005 * 109.46798 * 54.85233 * 3 2 1 5 5 C 1.50699 * 109.47125 * 174.85135 * 3 2 1 6 6 H 1.07998 * 120.00050 * 120.00324 * 5 3 2 7 7 C 1.37880 * 119.99764 * 300.00556 * 5 3 2 8 8 N 1.31513 * 120.00162 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99824 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46905 * 59.99999 * 9 7 5 11 11 H 1.48497 * 109.47239 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47009 * 299.99879 * 9 7 5 13 13 N 1.46899 * 109.47209 * 294.85381 * 3 2 1 14 14 C 1.46904 * 110.99567 * 153.74624 * 13 3 2 15 15 C 1.50699 * 109.46649 * 175.83045 * 14 13 3 16 16 C 1.35349 * 126.75291 * 95.00031 * 15 14 13 17 17 N 1.35314 * 106.18050 * 180.20223 * 16 15 14 18 18 C 1.46494 * 125.87201 * 179.77033 * 17 16 15 19 19 C 1.53002 * 109.47057 * 125.00339 * 18 17 16 20 20 C 1.50703 * 109.47338 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00030 * 180.02562 * 20 19 18 22 22 O 1.20761 * 119.99555 * 359.97438 * 20 19 18 23 23 N 1.28722 * 108.25720 * 359.62710 * 17 16 15 24 24 N 1.28629 * 110.18158 * 0.38502 * 23 17 16 25 25 H 1.09001 * 109.46657 * 186.19177 * 1 2 3 26 26 H 1.08996 * 109.47349 * 306.18628 * 1 2 3 27 27 H 1.09002 * 109.47482 * 66.19530 * 1 2 3 28 28 H 1.09001 * 109.47171 * 240.00449 * 2 1 3 29 29 H 1.08991 * 109.47365 * 119.99973 * 2 1 3 30 30 H 0.97001 * 119.99779 * 179.97438 * 8 7 5 31 31 H 1.00902 * 111.00161 * 29.79205 * 13 3 2 32 32 H 1.09000 * 109.46890 * 55.83489 * 14 13 3 33 33 H 1.08996 * 109.47153 * 295.82874 * 14 13 3 34 34 H 1.08002 * 126.91028 * 359.94440 * 16 15 14 35 35 H 1.09001 * 109.47560 * 245.00477 * 18 17 16 36 36 H 1.08999 * 109.46864 * 5.00364 * 18 17 16 37 37 H 1.09006 * 109.46825 * 300.00021 * 19 18 17 38 38 H 1.08999 * 109.47263 * 60.00269 * 19 18 17 39 39 H 1.08994 * 109.47532 * 59.99817 * 21 20 19 40 40 H 1.09003 * 109.47044 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47391 * 299.99392 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6032 1.9823 0.8403 5 6 3.5415 1.4446 0.1275 6 1 4.1487 1.8886 -0.6475 7 6 4.1402 0.8796 1.2336 8 7 3.4008 0.3393 2.1775 9 14 6.0016 0.8814 1.3913 10 1 6.4969 2.2813 1.3911 11 1 6.3914 0.2192 2.6620 12 1 6.5961 0.1457 0.2465 13 7 1.6543 2.0983 -1.2567 14 6 1.5461 3.5526 -1.0799 15 6 1.2503 4.1994 -2.4086 16 6 0.0313 4.5304 -2.8947 17 7 0.2471 5.0772 -4.1135 18 6 -0.7845 5.5829 -5.0224 19 6 -0.4716 7.0342 -5.3920 20 6 -1.5332 7.5547 -6.3265 21 6 -1.4555 8.9684 -6.8425 22 8 -2.4456 6.8385 -6.6626 23 7 1.5150 5.0794 -4.3357 24 7 2.1411 4.5598 -3.3394 25 1 -0.3633 -1.0217 0.1108 26 1 -0.3634 0.6067 0.8294 27 1 -0.3634 0.4148 -0.9402 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8221 -0.0585 2.9555 31 1 0.7941 1.7127 -1.6166 32 1 2.4856 3.9418 -0.6875 33 1 0.7402 3.7746 -0.3804 34 1 -0.9223 4.3834 -2.4094 35 1 -0.8030 4.9737 -5.9260 36 1 -1.7565 5.5344 -4.5316 37 1 -0.4532 7.6434 -4.4883 38 1 0.5004 7.0827 -5.8828 39 1 -0.5273 9.1020 -7.3979 40 1 -2.3030 9.1623 -7.4999 41 1 -1.4799 9.6634 -6.0032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906307161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:26 Heat of formation + Delta-G solvation = 55.269442 kcal Electronic energy + Delta-G solvation = -21202.764550 eV Core-core repulsion = 17927.098233 eV Total energy + Delta-G solvation = -3275.666317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -43.05455 -40.03422 -36.49463 -35.34163 -32.94250 -31.94501 -31.53137 -30.21458 -29.82279 -26.78178 -25.32328 -24.68964 -22.56428 -21.63320 -20.73441 -20.02043 -19.50772 -17.50572 -16.70504 -16.22469 -16.06811 -15.71010 -15.28242 -14.93660 -14.66516 -14.23252 -14.17441 -13.76630 -13.49371 -12.86508 -12.81919 -12.69068 -12.59909 -12.25185 -12.04749 -11.85916 -11.49488 -11.29711 -11.07079 -10.76311 -10.58626 -10.42978 -10.37344 -9.89583 -9.87958 -9.71407 -9.61518 -9.10413 -8.87686 -8.28107 -7.19021 -5.90483 -3.93728 1.37868 1.72177 2.27825 2.84238 3.41684 3.44340 3.49953 3.54415 4.03852 4.25101 4.50963 4.52431 4.60357 4.75597 4.83982 4.93538 5.01037 5.15134 5.26485 5.30870 5.39360 5.44100 5.65454 5.74252 6.15161 6.16993 6.21739 6.34408 6.43183 6.63698 6.66881 6.85478 6.90203 7.09710 7.21024 7.50409 7.81548 7.99519 8.31956 8.43692 8.75901 8.80605 9.15360 9.71192 11.14944 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.003006 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.771746 B = 9312.343799 C =10013.868534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.491 4.491 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.148 3.852 15 C 0.008 3.992 16 C -0.057 4.057 17 N -0.301 5.301 18 C 0.128 3.872 19 C -0.188 4.188 20 C 0.363 3.637 21 C -0.204 4.204 22 O -0.458 6.458 23 N -0.097 5.097 24 N -0.245 5.245 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.259 0.741 31 H 0.316 0.684 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.186 0.814 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 14.782 -12.925 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.310 5.310 14 C 0.016 3.984 15 C -0.130 4.130 16 C -0.208 4.208 17 N -0.095 5.095 18 C 0.006 3.994 19 C -0.226 4.226 20 C 0.238 3.762 21 C -0.261 4.261 22 O -0.331 6.331 23 N -0.077 5.077 24 N -0.112 5.112 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.203 0.797 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.232 14.705 -14.164 23.303 hybrid contribution -0.777 -0.170 1.332 1.552 sum -12.009 14.535 -12.832 22.806 Atomic orbital electron populations 1.21884 0.99668 0.99751 0.99427 1.21778 0.91153 1.00337 1.03188 1.19173 0.95597 0.89901 0.83979 0.97867 1.21222 0.91208 1.36196 1.04403 0.91834 1.24950 0.98129 0.95659 0.95812 1.69861 1.34789 1.39583 1.09700 0.86597 0.85824 0.78206 0.76992 1.20347 1.21586 1.20309 1.60624 1.36321 1.00704 1.33394 1.20084 1.01463 0.89885 0.86942 1.22295 0.88676 1.02765 0.99297 1.23402 1.02007 1.06927 0.88459 1.47267 1.07365 1.41088 1.13745 1.21760 0.88686 0.94792 0.94135 1.22434 1.01915 0.96074 1.02189 1.24430 0.83673 0.89897 0.78167 1.22300 1.05280 0.94971 1.03562 1.90461 1.32570 1.59087 1.51024 1.78241 0.88016 1.19926 1.21474 1.75128 1.26581 1.11297 0.98163 0.94391 0.93856 0.94699 0.94003 0.88130 0.93108 0.86671 0.88871 0.94819 0.79736 0.87951 0.87356 0.87332 0.86299 0.88557 0.89685 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.63 37.16 0.36 -2.49 16 2 C -0.13 -2.96 5.35 -26.73 -0.14 -3.11 16 3 C 0.22 5.47 2.03 -68.86 -0.14 5.33 16 4 H 0.00 0.10 7.83 -51.93 -0.41 -0.31 16 5 C -0.49 -13.76 8.61 -34.44 -0.30 -14.05 16 6 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.63 11.29 55.43 0.63 -25.00 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 N -0.68 -14.65 6.26 -109.22 -0.68 -15.33 16 14 C 0.15 2.82 6.01 -4.97 -0.03 2.79 16 15 C 0.01 0.14 6.80 -82.77 -0.56 -0.42 16 16 C -0.06 -0.76 11.50 -17.05 -0.20 -0.95 16 17 N -0.30 -3.76 3.44 -61.26 -0.21 -3.97 16 18 C 0.13 1.05 5.75 -4.04 -0.02 1.03 16 19 C -0.19 -1.14 5.76 -27.88 -0.16 -1.30 16 20 C 0.36 2.19 7.27 -29.04 -0.21 1.97 16 21 C -0.20 -0.67 10.26 36.00 0.37 -0.30 16 22 O -0.46 -4.38 16.71 6.00 0.10 -4.28 16 23 N -0.10 -1.57 12.91 60.35 0.78 -0.79 16 24 N -0.24 -4.69 12.41 33.29 0.41 -4.28 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.59 6.65 -51.93 -0.35 0.24 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.32 6.19 6.60 -39.29 -0.26 5.93 16 32 H 0.09 1.99 7.98 -51.93 -0.41 1.58 16 33 H 0.03 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.11 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.12 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -33.46 346.67 -6.25 -39.71 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.34 Total: 1.86 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.13 Total: -10.07 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.92 Total: -49.38 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.10 Total: -4.28 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.46 -6.25 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906307161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.979 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds