Wall clock time and date at job start Tue Mar 31 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29949 * 125.30502 * 2 1 4 4 O 1.41878 * 107.41608 * 179.97438 * 3 2 1 5 5 N 1.41884 * 106.38477 * 359.77603 * 4 3 2 6 6 C 1.29951 * 107.41541 * 0.37057 * 5 4 3 7 7 C 1.50693 * 125.30590 * 179.89085 * 6 5 4 8 8 H 1.09002 * 109.47343 * 194.69380 * 7 6 5 9 9 C 1.52998 * 109.47377 * 74.68954 * 7 6 5 10 10 N 1.46905 * 109.46992 * 314.69345 * 7 6 5 11 11 C 1.46904 * 111.00014 * 273.36320 * 10 7 6 12 12 C 1.53037 * 109.46177 * 274.19587 * 11 10 7 13 13 C 1.53192 * 109.31236 * 178.59672 * 12 11 10 14 14 N 1.46927 * 108.76145 * 54.65812 * 13 12 11 15 15 C 1.36938 * 120.62931 * 126.36116 * 14 13 12 16 16 H 1.08002 * 119.99519 * 208.36632 * 15 14 13 17 17 C 1.38813 * 120.00127 * 28.37209 * 15 14 13 18 18 N 1.31615 * 120.00091 * 15.15524 * 17 15 14 19 19 Si 1.86797 * 119.99903 * 195.15947 * 17 15 14 20 20 H 1.48503 * 109.47434 * 89.99615 * 19 17 15 21 21 H 1.48500 * 109.47173 * 209.99873 * 19 17 15 22 22 H 1.48500 * 109.47184 * 329.99886 * 19 17 15 23 23 C 1.46922 * 118.74065 * 306.38182 * 14 13 12 24 24 C 1.53037 * 109.45818 * 154.13825 * 11 10 7 25 25 H 1.09003 * 109.47995 * 270.00554 * 1 2 3 26 26 H 1.09002 * 109.47245 * 30.00470 * 1 2 3 27 27 H 1.09002 * 109.47294 * 150.00380 * 1 2 3 28 28 H 1.08996 * 109.47555 * 295.24586 * 9 7 6 29 29 H 1.09001 * 109.46745 * 55.24082 * 9 7 6 30 30 H 1.08995 * 109.47759 * 175.24074 * 9 7 6 31 31 H 1.00904 * 110.99705 * 149.41772 * 10 7 6 32 32 H 1.09005 * 109.45657 * 34.17072 * 11 10 7 33 33 H 1.08999 * 109.50117 * 298.56980 * 12 11 10 34 34 H 1.09001 * 109.49590 * 58.66157 * 12 11 10 35 35 H 1.09002 * 109.59940 * 294.87402 * 13 12 11 36 36 H 1.08998 * 109.58303 * 174.43570 * 13 12 11 37 37 H 0.97000 * 120.00058 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.58809 * 293.82689 * 23 14 13 39 39 H 1.09001 * 109.70820 * 173.46794 * 23 14 13 40 40 H 1.08997 * 109.50186 * 301.33894 * 24 11 10 41 41 H 1.08997 * 109.49465 * 61.43814 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6081 0.6247 0.0006 5 7 3.5709 -0.7937 0.0063 6 6 2.3212 -1.1499 0.0007 7 6 1.8208 -2.5714 0.0015 8 1 0.7638 -2.5846 -0.2646 9 6 2.0036 -3.1757 1.3951 10 7 2.5821 -3.3590 -0.9774 11 6 1.9849 -3.2550 -2.3156 12 6 0.8770 -4.3006 -2.4621 13 6 0.2332 -4.1661 -3.8457 14 7 1.2855 -4.2550 -4.8672 15 6 1.1892 -5.1590 -5.8912 16 1 2.0842 -5.5535 -6.3492 17 6 -0.0588 -5.5684 -6.3406 18 7 -1.1345 -4.8876 -6.0064 19 14 -0.2114 -7.0856 -7.4195 20 1 -0.4015 -8.2845 -6.5640 21 1 -1.3785 -6.9337 -8.3251 22 1 1.0245 -7.2450 -8.2273 23 6 2.4432 -3.3557 -4.7690 24 6 3.0620 -3.4990 -3.3749 25 1 -0.3635 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 3.0667 -3.2402 1.6266 29 1 1.5089 -2.5439 2.1328 30 1 1.5654 -4.1734 1.4189 31 1 2.6549 -4.3228 -0.6879 32 1 1.5637 -2.2585 -2.4488 33 1 1.3019 -5.2985 -2.3537 34 1 0.1218 -4.1408 -1.6926 35 1 -0.2702 -3.2023 -3.9225 36 1 -0.4878 -4.9702 -3.9928 37 1 -2.0065 -5.1739 -6.3201 38 1 2.1200 -2.3259 -4.9211 39 1 3.1811 -3.6226 -5.5255 40 1 3.8621 -2.7686 -3.2552 41 1 3.4661 -4.5045 -3.2579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924999377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:13 Heat of formation + Delta-G solvation = 106.418906 kcal Electronic energy + Delta-G solvation = -22619.711809 eV Core-core repulsion = 19346.263499 eV Total energy + Delta-G solvation = -3273.448310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52140 -38.45475 -36.20135 -34.21299 -33.29930 -31.93090 -30.62088 -29.85887 -28.91133 -28.18649 -24.87318 -24.46649 -22.20259 -21.83991 -21.34104 -20.25060 -19.23104 -17.08764 -16.90519 -16.13933 -15.43864 -15.06700 -14.92990 -14.65411 -14.21520 -13.68103 -13.60680 -13.53440 -13.36683 -13.13303 -12.83059 -12.73036 -12.63741 -12.08287 -11.85775 -11.65537 -11.59926 -11.40486 -11.05343 -10.83239 -10.76321 -10.69440 -10.60342 -10.49348 -10.20473 -10.09212 -9.75043 -9.59852 -8.56399 -8.28684 -6.70292 -5.82145 -3.25623 0.54639 1.93446 2.66346 3.12656 3.35128 3.42310 3.43582 3.66255 4.21210 4.46746 4.52754 4.75053 4.78753 4.99970 5.10907 5.12254 5.25737 5.35745 5.41044 5.46328 5.48834 5.55294 5.63865 5.66206 5.80860 5.84849 6.08607 6.26043 6.33528 6.46719 6.52082 6.61499 6.78543 6.93309 6.96576 7.16755 7.26586 7.42934 7.59850 7.76402 8.42316 9.18539 9.81314 10.38018 11.26330 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.004059 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.697324 B = 6896.560496 C = 6924.142727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.078 3.922 3 N -0.285 5.285 4 O 0.013 5.987 5 N -0.240 5.240 6 C 0.084 3.916 7 C 0.147 3.853 8 H 0.080 0.920 9 C -0.152 4.152 10 N -0.678 5.678 11 C 0.094 3.906 12 C -0.167 4.167 13 C 0.175 3.825 14 N -0.592 5.592 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.906 5.906 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.117 4.117 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.351 0.649 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.015 0.985 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 4.818 15.163 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 N -0.031 5.031 4 O -0.127 6.127 5 N 0.017 4.983 6 C -0.101 4.101 7 C 0.035 3.965 8 H 0.098 0.902 9 C -0.211 4.211 10 N -0.310 5.310 11 C -0.014 4.014 12 C -0.208 4.208 13 C 0.048 3.952 14 N -0.315 5.315 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.551 5.551 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.018 3.982 24 C -0.156 4.156 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.988 6.129 14.980 16.459 hybrid contribution -1.515 -1.645 -0.524 2.296 sum 1.473 4.485 14.456 15.208 Atomic orbital electron populations 1.20603 0.84413 1.05616 1.04623 1.24610 1.00272 0.89129 0.96451 1.79873 0.89441 1.19793 1.13971 1.93384 1.19964 1.14773 1.84604 1.80022 1.17518 0.89736 1.11048 1.24610 0.89747 0.98613 0.97099 1.20098 0.96493 0.85522 0.94378 0.90185 1.21984 1.03703 1.01295 0.94070 1.60565 1.52524 1.16077 1.01875 1.21610 0.94307 0.98619 0.86908 1.22884 0.97831 0.98785 1.01307 1.20715 0.90751 1.00582 0.83163 1.44052 1.20651 1.39887 1.26872 1.19231 0.92006 1.16210 1.10567 0.91642 1.25054 0.96275 0.99451 0.98874 1.70002 0.98006 1.38434 1.48635 0.86268 0.77300 0.83052 0.80030 1.21471 1.21742 1.20409 1.20924 0.90546 0.93137 0.93616 1.21968 0.96829 1.01171 0.95672 0.88649 0.89102 0.88618 0.90969 0.91579 0.90791 0.82856 0.91731 0.92237 0.93656 0.96604 0.89204 0.93656 0.96715 0.92598 0.92660 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.18 36.00 0.37 -0.35 16 2 C 0.08 0.92 7.19 -82.38 -0.59 0.33 16 3 N -0.29 -4.06 12.98 33.74 0.44 -3.62 16 4 O 0.01 0.20 13.71 12.02 0.16 0.37 16 5 N -0.24 -3.65 12.96 33.74 0.44 -3.22 16 6 C 0.08 1.07 5.78 -82.38 -0.48 0.59 16 7 C 0.15 1.57 2.81 -68.87 -0.19 1.38 16 8 H 0.08 0.77 5.83 -51.93 -0.30 0.47 16 9 C -0.15 -1.25 9.14 37.16 0.34 -0.91 16 10 N -0.68 -8.78 6.03 -100.91 -0.61 -9.38 16 11 C 0.09 1.49 2.23 -67.67 -0.15 1.34 16 12 C -0.17 -2.85 5.31 -26.61 -0.14 -3.00 16 13 C 0.17 3.94 5.29 -3.71 -0.02 3.92 16 14 N -0.59 -14.47 2.99 -172.32 -0.52 -14.98 16 15 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 16 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 17 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 18 N -0.91 -25.68 11.10 55.49 0.62 -25.06 16 19 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.14 3.04 6.51 -3.71 -0.02 3.02 16 24 C -0.12 -2.06 5.69 -26.61 -0.15 -2.21 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 0.65 7.00 -51.93 -0.36 0.29 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.35 4.13 8.07 -39.29 -0.32 3.81 16 32 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.66 7.50 -51.93 -0.39 0.27 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 2.30 6.01 -51.93 -0.31 1.98 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -30.85 333.00 -7.03 -37.88 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.27 Total: -0.48 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.27 Total: -2.84 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.37 Total: -56.27 kcal Atomic # 8 Polarization: 0.20 SS G_CDS: 0.16 Total: 0.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.85 -7.03 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924999377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.296 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds