Wall clock time and date at job start Tue Mar 31 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.52991 * 109.47425 * 239.99939 * 2 1 3 5 5 N 1.46904 * 109.47174 * 119.99392 * 2 1 3 6 6 C 1.46898 * 110.99459 * 60.00255 * 5 2 1 7 7 C 1.53004 * 109.46947 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21303 * 119.99816 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.40595 * 119.99527 * 179.72943 * 10 8 7 12 12 C 1.40649 * 126.08553 * 359.68015 * 11 10 8 13 13 N 1.30903 * 108.38945 * 179.87998 * 12 11 10 14 14 N 1.40074 * 108.40705 * 0.38914 * 13 12 11 15 15 C 1.37320 * 126.07077 * 179.73305 * 14 13 12 16 16 H 1.07999 * 120.00028 * 180.02562 * 15 14 13 17 17 C 1.38983 * 120.00055 * 0.02562 * 15 14 13 18 18 N 1.31296 * 119.99923 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47382 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46738 * 120.00166 * 19 17 15 22 22 H 1.48494 * 109.47440 * 239.99960 * 19 17 15 23 23 C 1.35679 * 126.07814 * 179.97438 * 11 10 8 24 24 H 1.09000 * 109.47648 * 300.00414 * 1 2 3 25 25 H 1.09005 * 109.47123 * 60.00493 * 1 2 3 26 26 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47193 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46827 * 299.99688 * 3 2 1 29 29 H 1.08992 * 109.47453 * 59.99659 * 3 2 1 30 30 H 1.09007 * 109.46991 * 299.99676 * 4 2 1 31 31 H 1.08997 * 109.47481 * 59.99389 * 4 2 1 32 32 H 1.08995 * 109.47608 * 180.02562 * 4 2 1 33 33 H 1.00894 * 111.00129 * 183.95537 * 5 2 1 34 34 H 1.08995 * 109.47478 * 60.00426 * 6 5 2 35 35 H 1.08998 * 109.47690 * 299.99847 * 6 5 2 36 36 H 1.09009 * 109.46730 * 59.99875 * 7 6 5 37 37 H 1.08998 * 109.46846 * 300.00419 * 7 6 5 38 38 H 0.97001 * 120.00485 * 359.71840 * 10 8 7 39 39 H 1.07999 * 125.80209 * 0.02562 * 12 11 10 40 40 H 0.97004 * 120.00252 * 179.97438 * 18 17 15 41 41 H 1.07996 * 126.24944 * 359.92772 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 2.0197 -0.6924 1.1995 6 6 1.5487 -2.0834 1.2335 7 6 2.0782 -2.7705 2.4938 8 6 1.5945 -4.1973 2.5290 9 8 0.8946 -4.6227 1.6342 10 7 1.9346 -4.9989 3.5577 11 6 1.4786 -6.3284 3.5934 12 6 0.6608 -6.9498 2.6325 13 7 0.4507 -8.1865 3.0066 14 7 1.1158 -8.4004 4.2206 15 6 1.1323 -9.5712 4.9381 16 1 1.6797 -9.6273 5.8674 17 6 0.4446 -10.6839 4.4684 18 7 -0.2204 -10.6158 3.3383 19 14 0.4677 -12.2766 5.4440 20 1 1.2832 -12.0936 6.6715 21 1 -0.9202 -12.6452 5.8227 22 1 1.0577 -13.3572 4.6138 23 6 1.7446 -7.2386 4.5638 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7216 -1.2489 33 1 3.0262 -0.6499 1.2560 34 1 1.9122 -2.6117 0.3522 35 1 0.4588 -2.0979 1.2420 36 1 1.7151 -2.2422 3.3755 37 1 3.1681 -2.7560 2.4848 38 1 2.4940 -4.6587 4.2734 39 1 0.2742 -6.4861 1.7370 40 1 -0.7001 -11.3924 3.0103 41 1 2.3447 -7.0740 5.4466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931190480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:45 Heat of formation + Delta-G solvation = 37.706541 kcal Electronic energy + Delta-G solvation = -21328.101076 eV Core-core repulsion = 18051.673175 eV Total energy + Delta-G solvation = -3276.427902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.91108 -38.90586 -38.12556 -34.19681 -33.27660 -33.04429 -30.25790 -29.21161 -27.71842 -27.47818 -27.35985 -24.86215 -22.95905 -20.92598 -20.02383 -19.48357 -19.29742 -17.48467 -16.47245 -16.01487 -15.47055 -15.39481 -15.21993 -14.79602 -14.39825 -13.98904 -13.90133 -13.44550 -13.15686 -13.01949 -12.82238 -12.37860 -12.25751 -11.98030 -11.89145 -11.70302 -11.55126 -11.38547 -11.28048 -11.25326 -10.98513 -10.91242 -10.75715 -10.49821 -10.11923 -9.14607 -9.12199 -8.77648 -8.53042 -8.03220 -6.66406 -6.53822 -4.20522 2.86947 3.06006 3.06568 3.12000 3.53334 3.70957 3.85691 4.18191 4.45543 4.63384 4.73239 4.80614 4.97253 5.00399 5.04009 5.15699 5.34594 5.37392 5.43231 5.55616 5.60510 5.63019 5.70010 5.73766 5.85094 5.92968 6.04938 6.16890 6.17733 6.27159 6.49756 6.91149 6.94233 6.99586 7.16745 7.26002 7.28180 7.88634 8.22502 8.32962 8.66751 8.91750 9.40731 9.69980 10.42361 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.056889 B = 0.002695 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.066154 B =10386.241456 C =10674.658640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.184 4.184 5 N -0.681 5.681 6 C 0.069 3.931 7 C -0.133 4.133 8 C 0.499 3.501 9 O -0.539 6.539 10 N -0.626 5.626 11 C -0.059 4.059 12 C -0.034 4.034 13 N -0.261 5.261 14 N -0.144 5.144 15 C -0.323 4.323 16 H 0.116 0.884 17 C 0.045 3.955 18 N -0.771 5.771 19 Si 0.934 3.066 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.085 4.085 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.337 0.663 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.397 0.603 39 H 0.176 0.824 40 H 0.274 0.726 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 18.017 -2.443 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 C -0.195 4.195 4 C -0.243 4.243 5 N -0.312 5.312 6 C -0.060 4.060 7 C -0.174 4.174 8 C 0.285 3.715 9 O -0.417 6.417 10 N -0.269 5.269 11 C -0.165 4.165 12 C -0.210 4.210 13 N -0.092 5.092 14 N 0.088 4.912 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.172 4.172 18 N -0.397 5.397 19 Si 0.758 3.242 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.236 4.236 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.084 0.916 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.054 16.704 -3.125 17.470 hybrid contribution 1.408 -0.177 0.416 1.479 sum 5.463 16.526 -2.708 17.615 Atomic orbital electron populations 1.21904 0.93747 1.02515 1.01815 1.20917 0.95743 0.93897 0.88047 1.21819 1.00705 0.94913 1.02091 1.22579 1.01039 1.01790 0.98908 1.60681 1.15846 1.15241 1.39417 1.21745 1.01592 0.86804 0.95892 1.21520 1.01992 0.92925 1.00963 1.20355 0.81703 0.87311 0.82181 1.90592 1.38096 1.75632 1.37389 1.42557 1.50532 1.10137 1.23639 1.17304 1.12507 0.85158 1.01493 1.24110 1.02827 0.92678 1.01388 1.78243 1.19140 1.14717 0.97097 1.44552 1.26958 1.06608 1.13081 1.19905 1.33984 0.86158 1.05465 0.86616 1.25644 0.95240 1.00093 0.96181 1.70231 1.22904 1.30008 1.16599 0.85767 0.78723 0.80210 0.79453 1.18706 1.19928 1.19940 1.21273 1.10991 0.88609 1.02707 0.91872 0.92528 0.92080 0.92889 0.92291 0.91816 0.91786 0.92199 0.92809 0.84547 0.93852 0.89738 0.88515 0.89610 0.77042 0.80761 0.91554 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.24 37.16 0.31 -1.03 16 2 C 0.10 0.94 0.97 -131.60 -0.13 0.81 16 3 C -0.14 -1.01 8.73 37.16 0.32 -0.69 16 4 C -0.18 -1.65 8.23 37.15 0.31 -1.34 16 5 N -0.68 -6.52 6.09 -99.97 -0.61 -7.13 16 6 C 0.07 0.82 4.19 -3.82 -0.02 0.80 16 7 C -0.13 -1.55 5.96 -27.88 -0.17 -1.72 16 8 C 0.50 8.55 7.80 -10.98 -0.09 8.46 16 9 O -0.54 -11.48 13.13 5.54 0.07 -11.40 16 10 N -0.63 -11.10 5.47 -10.00 -0.05 -11.16 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 C -0.03 -0.93 10.85 -17.04 -0.18 -1.11 16 13 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 14 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16 15 C -0.32 -8.64 10.25 -14.82 -0.15 -8.80 16 16 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.81 11.81 55.49 0.66 -21.16 16 19 Si 0.93 19.11 29.55 -169.99 -5.02 14.09 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 23 C -0.08 -2.03 11.49 -16.39 -0.19 -2.22 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.66 6.41 -51.93 -0.33 0.32 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 6.40 -51.93 -0.33 0.34 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.34 2.80 8.72 -39.30 -0.34 2.46 16 34 H 0.04 0.57 6.26 -51.93 -0.33 0.24 16 35 H 0.08 1.15 6.26 -51.93 -0.33 0.82 16 36 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 5.36 8.83 -40.82 -0.36 5.00 16 39 H 0.18 4.64 5.92 -52.49 -0.31 4.33 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.15 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -33.21 336.89 -6.37 -39.57 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.10 Total: 11.26 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.66 Total: -7.70 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.27 Total: -50.90 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.21 -6.37 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931190480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.279 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds