Wall clock time and date at job start Tue Mar 31 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.52991 * 109.47425 * 239.99939 * 2 1 3 5 5 N 1.46904 * 109.47174 * 119.99392 * 2 1 3 6 6 C 1.46898 * 110.99459 * 60.00255 * 5 2 1 7 7 C 1.53004 * 109.46947 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21303 * 119.99816 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.40595 * 119.99527 * 179.72943 * 10 8 7 12 12 C 1.40649 * 126.08553 * 359.68015 * 11 10 8 13 13 N 1.30903 * 108.38945 * 179.87998 * 12 11 10 14 14 N 1.40074 * 108.40705 * 0.38914 * 13 12 11 15 15 C 1.37320 * 126.07077 * 179.73305 * 14 13 12 16 16 H 1.07999 * 120.00028 * 180.02562 * 15 14 13 17 17 C 1.38983 * 120.00055 * 0.02562 * 15 14 13 18 18 N 1.31296 * 119.99923 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47382 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46738 * 120.00166 * 19 17 15 22 22 H 1.48494 * 109.47440 * 239.99960 * 19 17 15 23 23 C 1.35679 * 126.07814 * 179.97438 * 11 10 8 24 24 H 1.09000 * 109.47648 * 300.00414 * 1 2 3 25 25 H 1.09005 * 109.47123 * 60.00493 * 1 2 3 26 26 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47193 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46827 * 299.99688 * 3 2 1 29 29 H 1.08992 * 109.47453 * 59.99659 * 3 2 1 30 30 H 1.09007 * 109.46991 * 299.99676 * 4 2 1 31 31 H 1.08997 * 109.47481 * 59.99389 * 4 2 1 32 32 H 1.08995 * 109.47608 * 180.02562 * 4 2 1 33 33 H 1.00894 * 111.00129 * 183.95537 * 5 2 1 34 34 H 1.08995 * 109.47478 * 60.00426 * 6 5 2 35 35 H 1.08998 * 109.47690 * 299.99847 * 6 5 2 36 36 H 1.09009 * 109.46730 * 59.99875 * 7 6 5 37 37 H 1.08998 * 109.46846 * 300.00419 * 7 6 5 38 38 H 0.97001 * 120.00485 * 359.71840 * 10 8 7 39 39 H 1.07999 * 125.80209 * 0.02562 * 12 11 10 40 40 H 0.97004 * 120.00252 * 179.97438 * 18 17 15 41 41 H 1.07996 * 126.24944 * 359.92772 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 2.0197 -0.6924 1.1995 6 6 1.5487 -2.0834 1.2335 7 6 2.0782 -2.7705 2.4938 8 6 1.5945 -4.1973 2.5290 9 8 0.8946 -4.6227 1.6342 10 7 1.9346 -4.9989 3.5577 11 6 1.4786 -6.3284 3.5934 12 6 0.6608 -6.9498 2.6325 13 7 0.4507 -8.1865 3.0066 14 7 1.1158 -8.4004 4.2206 15 6 1.1323 -9.5712 4.9381 16 1 1.6797 -9.6273 5.8674 17 6 0.4446 -10.6839 4.4684 18 7 -0.2204 -10.6158 3.3383 19 14 0.4677 -12.2766 5.4440 20 1 1.2832 -12.0936 6.6715 21 1 -0.9202 -12.6452 5.8227 22 1 1.0577 -13.3572 4.6138 23 6 1.7446 -7.2386 4.5638 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7216 -1.2489 33 1 3.0262 -0.6499 1.2560 34 1 1.9122 -2.6117 0.3522 35 1 0.4588 -2.0979 1.2420 36 1 1.7151 -2.2422 3.3755 37 1 3.1681 -2.7560 2.4848 38 1 2.4940 -4.6587 4.2734 39 1 0.2742 -6.4861 1.7370 40 1 -0.7001 -11.3924 3.0103 41 1 2.3447 -7.0740 5.4466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931190480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:42 Heat of formation + Delta-G solvation = 13.186381 kcal Electronic energy + Delta-G solvation = -21329.164350 eV Core-core repulsion = 18051.673175 eV Total energy + Delta-G solvation = -3277.491176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -41.69225 -40.34572 -39.12766 -35.91844 -34.94016 -34.16327 -32.24168 -30.43642 -29.12670 -28.27946 -28.19156 -26.75357 -24.12785 -22.80082 -21.53263 -21.14140 -20.20579 -19.28608 -17.84228 -17.38768 -17.06977 -16.80556 -16.36830 -15.89081 -15.67369 -15.35822 -15.10561 -14.83985 -14.71079 -14.57103 -13.97103 -13.48679 -13.29658 -13.24206 -12.93211 -12.92152 -12.87389 -12.79000 -12.60405 -12.37962 -12.04957 -12.02213 -11.82981 -11.80204 -11.53589 -11.01259 -10.83249 -10.61818 -10.09924 -9.34908 -8.50705 -8.46940 -6.23899 1.22769 1.39804 1.55584 1.59053 1.88583 2.06069 2.31655 2.54729 2.90568 3.09216 3.30562 3.89117 3.92944 4.03142 4.17473 4.24751 4.35746 4.45833 4.61606 4.66406 4.67486 4.75473 4.85030 4.92295 4.98456 5.00878 5.01307 5.06272 5.10424 5.13570 5.27265 5.30699 5.37989 5.46814 5.52615 5.96885 6.08852 6.33221 6.55966 6.74645 6.81705 7.44476 7.49969 7.69693 8.52882 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.056889 B = 0.002695 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.066154 B =10386.241456 C =10674.658640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.101 3.899 3 C -0.132 4.132 4 C -0.181 4.181 5 N -0.674 5.674 6 C 0.076 3.924 7 C -0.115 4.115 8 C 0.495 3.505 9 O -0.584 6.584 10 N -0.618 5.618 11 C -0.044 4.044 12 C -0.063 4.063 13 N -0.312 5.312 14 N -0.170 5.170 15 C -0.353 4.353 16 H 0.142 0.858 17 C -0.009 4.009 18 N -0.827 5.827 19 Si 1.020 2.980 20 H -0.240 1.240 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.082 4.082 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.349 0.651 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.166 0.834 40 H 0.276 0.724 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 19.618 -0.521 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 C -0.189 4.189 4 C -0.240 4.240 5 N -0.306 5.306 6 C -0.054 4.054 7 C -0.155 4.155 8 C 0.284 3.716 9 O -0.464 6.464 10 N -0.263 5.263 11 C -0.150 4.150 12 C -0.238 4.238 13 N -0.144 5.144 14 N 0.061 4.939 15 C -0.484 4.484 16 H 0.159 0.841 17 C -0.220 4.220 18 N -0.455 5.455 19 Si 0.839 3.161 20 H -0.162 1.162 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.232 4.232 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.258 0.742 39 H 0.182 0.818 40 H 0.085 0.915 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.154 18.374 -1.176 19.412 hybrid contribution 0.790 -0.497 -0.246 0.965 sum 6.943 17.877 -1.422 19.230 Atomic orbital electron populations 1.21904 0.94443 1.01256 1.02360 1.21010 0.95297 0.94958 0.87680 1.21768 1.01288 0.93330 1.02538 1.22543 1.01506 1.00501 0.99434 1.60650 1.16692 1.13392 1.39830 1.21551 1.00269 0.88096 0.95480 1.21479 1.03894 0.88533 1.01643 1.21444 0.80276 0.89097 0.80817 1.90589 1.39942 1.76860 1.39050 1.42541 1.50877 1.07987 1.24939 1.17392 1.10450 0.87408 0.99731 1.24158 1.04518 0.92895 1.02278 1.78137 1.21093 1.16219 0.98952 1.44857 1.27945 1.08108 1.13005 1.20658 1.34835 0.86441 1.06473 0.84104 1.26911 0.94047 1.04063 0.97002 1.70415 1.24597 1.31385 1.19099 0.84520 0.78886 0.74392 0.78286 1.16216 1.19822 1.19806 1.22034 1.10113 0.87349 1.03743 0.92012 0.91319 0.94219 0.91905 0.91349 0.91908 0.94064 0.91321 0.91962 0.83245 0.95605 0.92038 0.86050 0.86126 0.74160 0.81757 0.91460 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.24 71.98 0.59 -2.01 16 2 C 0.10 1.65 0.97 3.52 0.00 1.66 16 3 C -0.13 -1.59 8.73 71.98 0.63 -0.97 16 4 C -0.18 -3.06 8.23 71.98 0.59 -2.47 16 5 N -0.67 -11.51 6.09 -470.19 -2.86 -14.37 16 6 C 0.08 1.73 4.19 86.30 0.36 2.09 16 7 C -0.12 -2.37 5.96 29.85 0.18 -2.19 16 8 C 0.50 16.47 7.80 87.66 0.68 17.16 16 9 O -0.58 -25.53 13.13 -3.10 -0.04 -25.57 16 10 N -0.62 -20.77 5.47 -303.92 -1.66 -22.44 16 11 C -0.04 -2.02 6.90 37.73 0.26 -1.76 16 12 C -0.06 -3.54 10.85 85.42 0.93 -2.61 16 13 N -0.31 -19.23 10.40 -56.47 -0.59 -19.82 16 14 N -0.17 -9.58 3.74 -190.02 -0.71 -10.29 16 15 C -0.35 -18.91 10.25 84.01 0.86 -18.05 16 16 H 0.14 6.52 7.83 -2.91 -0.02 6.49 16 17 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 18 N -0.83 -48.58 11.81 21.66 0.26 -48.33 16 19 Si 1.02 39.03 29.55 68.60 2.03 41.06 16 20 H -0.24 -8.14 7.11 99.48 0.71 -7.44 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 23 C -0.08 -3.83 11.49 83.37 0.96 -2.88 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.04 0.89 6.41 -2.39 -0.02 0.87 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.88 6.40 -2.38 -0.02 0.87 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.35 4.70 8.72 -89.70 -0.78 3.92 16 34 H 0.03 0.68 6.26 -2.39 -0.01 0.67 16 35 H 0.06 1.70 6.26 -2.39 -0.01 1.69 16 36 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.42 9.92 8.83 -92.71 -0.82 9.10 16 39 H 0.17 9.33 5.92 -2.91 -0.02 9.31 16 40 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.19 6.83 8.06 -2.91 -0.02 6.81 16 Total: -1.00 -77.06 336.89 2.39 -74.67 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.55 Total: 37.11 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.51 Total: -12.03 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -5.57 Total: -115.24 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.57 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -77.06 2.39 -74.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931190480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.861 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds