Wall clock time and date at job start Tue Mar 31 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46746 * 120.00067 * 2 1 3 5 5 C 1.50706 * 109.47341 * 239.99447 * 2 1 3 6 6 N 1.35377 * 126.56488 * 1.75977 * 5 2 1 7 7 H 0.97004 * 126.13200 * 359.97438 * 6 5 2 8 8 C 1.35845 * 107.73042 * 179.97438 * 6 5 2 9 9 N 1.30167 * 109.00288 * 0.02562 * 8 6 5 10 10 C 1.35760 * 108.86580 * 359.72974 * 9 8 6 11 11 C 1.47328 * 126.23234 * 180.27421 * 10 9 8 12 12 O 1.21629 * 119.99773 * 174.62850 * 11 10 9 13 13 N 1.34774 * 120.00571 * 354.63447 * 11 10 9 14 14 C 1.46494 * 120.00266 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47169 * 179.97438 * 14 13 11 16 16 N 1.46502 * 109.47485 * 179.97438 * 15 14 13 17 17 C 1.36931 * 120.00346 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99792 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00301 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99682 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00235 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47277 * 59.99911 * 21 19 17 23 23 H 1.48507 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46722 * 299.99933 * 21 19 17 25 25 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46655 * 60.00145 * 1 2 3 27 27 H 1.08993 * 109.47421 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.47311 * 70.24934 * 3 2 1 29 29 H 1.09007 * 109.47158 * 190.24253 * 3 2 1 30 30 H 1.08997 * 109.47535 * 310.24473 * 3 2 1 31 31 H 1.09002 * 109.47467 * 65.24306 * 4 2 1 32 32 H 1.09010 * 109.47336 * 185.24142 * 4 2 1 33 33 H 1.09002 * 109.47150 * 305.24274 * 4 2 1 34 34 H 1.07998 * 125.49529 * 180.02562 * 8 6 5 35 35 H 0.96998 * 119.99584 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47222 * 299.99906 * 14 13 11 37 37 H 1.09004 * 109.47356 * 60.00105 * 14 13 11 38 38 H 1.09002 * 109.47316 * 300.00269 * 15 14 13 39 39 H 1.09008 * 109.47026 * 59.99981 * 15 14 13 40 40 H 0.97001 * 119.99156 * 0.02562 * 16 15 14 41 41 H 0.97000 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2430 -2.2193 7 1 0.3077 -1.2370 -2.2651 8 6 2.1185 -1.7873 -3.1360 9 7 3.3464 -1.6070 -2.7435 10 6 3.3360 -0.9353 -1.5637 11 6 4.5172 -0.5264 -0.7840 12 8 4.3812 0.1580 0.2122 13 7 5.7486 -0.9107 -1.1745 14 6 6.9231 -0.5046 -0.3987 15 6 8.1860 -1.0696 -1.0520 16 7 9.3606 -0.6630 -0.2766 17 6 10.6116 -1.0543 -0.6728 18 1 10.7324 -1.6623 -1.5572 19 6 11.7245 -0.6695 0.0621 20 7 11.5773 0.0711 1.1402 21 14 13.4311 -1.2026 -0.4788 22 1 13.7038 -0.6811 -1.8421 23 1 14.4410 -0.6655 0.4683 24 1 13.5053 -2.6857 -0.4922 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 1.8337 1.9008 0.9672 29 1 3.1146 1.4479 -0.1827 30 1 1.5352 2.0063 -0.7844 31 1 1.7552 -1.7725 1.2036 32 1 3.1259 -0.6407 1.2975 33 1 1.6019 -0.2645 2.1368 34 1 1.8176 -2.2887 -4.0440 35 1 5.8570 -1.4568 -1.9687 36 1 6.9828 0.5834 -0.3726 37 1 6.8375 -0.8884 0.6179 38 1 8.1261 -2.1577 -1.0778 39 1 8.2718 -0.6862 -2.0688 40 1 9.2520 -0.1173 0.5179 41 1 12.3549 0.3397 1.6540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127659921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:19 Heat of formation + Delta-G solvation = 26.440087 kcal Electronic energy + Delta-G solvation = -21824.170389 eV Core-core repulsion = 18547.253937 eV Total energy + Delta-G solvation = -3276.916452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54824 -39.14807 -36.96942 -35.48539 -33.70745 -32.83474 -31.11281 -29.48595 -27.77126 -27.28994 -27.23254 -24.18787 -22.78242 -22.21867 -21.32529 -20.72784 -19.35110 -18.00867 -17.20804 -16.15816 -15.71715 -15.64577 -15.10145 -14.82246 -14.68174 -14.41941 -14.20757 -13.89627 -13.47386 -13.33079 -13.07790 -12.77645 -12.59221 -12.27015 -11.74053 -11.59390 -11.14076 -11.12652 -11.06966 -11.00422 -10.74866 -10.73349 -10.32660 -10.28850 -10.08492 -9.75373 -9.54876 -8.88944 -8.76168 -8.50087 -6.92478 -5.73625 -3.03700 1.47553 2.29699 2.67974 3.47285 3.47438 3.51960 3.54590 3.59473 4.17920 4.42323 4.52846 4.64421 4.72612 4.92031 5.07716 5.19417 5.31049 5.42449 5.56985 5.59399 5.63252 5.67469 5.75847 5.87517 5.92483 5.94896 5.97884 6.06880 6.21144 6.28255 6.41929 6.49943 6.70641 6.81415 6.92667 6.97221 7.52868 7.71906 7.89077 8.44126 8.50659 9.55472 10.10942 10.46135 11.49074 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.003082 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.447410 B = 9082.434441 C = 9706.213721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.012 3.988 3 C -0.151 4.151 4 C -0.156 4.156 5 C 0.080 3.920 6 N -0.565 5.565 7 H 0.422 0.578 8 C 0.181 3.819 9 N -0.460 5.460 10 C -0.059 4.059 11 C 0.596 3.404 12 O -0.531 6.531 13 N -0.707 5.707 14 C 0.112 3.888 15 C 0.144 3.856 16 N -0.729 5.729 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.214 0.786 35 H 0.407 0.593 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.386 0.614 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.367 -2.125 -6.205 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 C -0.208 4.208 4 C -0.213 4.213 5 C -0.042 4.042 6 N -0.168 5.168 7 H 0.260 0.740 8 C -0.104 4.104 9 N -0.179 5.179 10 C -0.187 4.187 11 C 0.382 3.618 12 O -0.411 6.411 13 N -0.356 5.356 14 C -0.012 4.012 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.220 0.780 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.469 -1.979 -6.002 27.213 hybrid contribution -0.378 -0.278 -0.281 0.547 sum -26.847 -2.258 -6.283 27.665 Atomic orbital electron populations 1.22039 0.94748 1.01606 1.02657 1.19096 0.94238 0.95853 0.89811 1.22155 1.05280 0.92164 1.01228 1.22193 1.06033 0.98393 0.94680 1.21213 0.90822 0.99644 0.92494 1.43167 1.10641 1.44548 1.18431 0.73978 1.25110 0.84829 1.03116 0.97310 1.70609 1.21047 1.15494 1.10757 1.20380 0.92513 1.09185 0.96669 1.16836 0.81823 0.79601 0.83518 1.90599 1.85314 1.38900 1.26258 1.45737 1.05651 1.53706 1.30527 1.21589 0.83800 1.00347 0.95435 1.20762 0.85942 0.96935 0.94792 1.42179 1.00867 1.63184 1.31211 1.19167 0.83535 1.26648 1.07960 0.91084 1.24766 0.97975 1.00526 0.97630 1.69661 1.29329 1.40932 1.18116 0.86226 0.84082 0.78072 0.77540 1.21216 1.21655 1.21225 0.92768 0.92813 0.91117 0.92098 0.88286 0.93946 0.93752 0.87965 0.92279 0.76992 0.75807 0.91167 0.91183 0.95731 0.95704 0.78023 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.54 37.16 0.28 -0.75 16 2 C 0.01 0.12 0.75 -155.66 -0.12 0.00 16 3 C -0.15 -1.69 8.18 37.15 0.30 -1.39 16 4 C -0.16 -1.75 8.18 37.16 0.30 -1.45 16 5 C 0.08 0.87 5.59 -81.68 -0.46 0.41 16 6 N -0.56 -4.16 5.83 -10.11 -0.06 -4.22 16 7 H 0.42 1.60 8.11 -40.82 -0.33 1.27 16 8 C 0.18 1.49 13.04 -89.91 -1.17 0.32 16 9 N -0.46 -5.73 11.02 -11.03 -0.12 -5.86 16 10 C -0.06 -0.80 6.78 -83.09 -0.56 -1.36 16 11 C 0.60 9.44 7.36 -12.56 -0.09 9.35 16 12 O -0.53 -9.07 10.04 5.25 0.05 -9.01 16 13 N -0.71 -11.22 5.55 -61.41 -0.34 -11.56 16 14 C 0.11 2.03 5.79 -4.05 -0.02 2.00 16 15 C 0.14 2.98 6.37 -4.04 -0.03 2.95 16 16 N -0.73 -19.06 5.60 -59.90 -0.34 -19.40 16 17 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 21 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H 0.05 0.31 8.13 -51.93 -0.42 -0.11 16 26 H 0.05 0.30 8.05 -51.93 -0.42 -0.12 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 29 H 0.10 1.41 4.67 -51.93 -0.24 1.17 16 30 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.46 4.63 -51.92 -0.24 1.22 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.41 6.00 8.20 -40.82 -0.33 5.66 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.39 10.58 7.67 -40.82 -0.31 10.27 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -33.88 333.91 -7.95 -41.83 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.07 Total: 10.94 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.81 Total: 2.54 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -0.13 Total: -69.01 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.88 -7.95 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127659921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.273 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds