Wall clock time and date at job start Tue Mar 31 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 H 1.09002 * 109.47281 * 305.00101 * 3 2 1 5 5 C 1.53007 * 109.47095 * 64.99568 * 3 2 1 6 6 N 1.46493 * 109.47453 * 184.99732 * 3 2 1 7 7 N 1.28450 * 125.19119 * 305.22472 * 6 3 2 8 8 C 1.30863 * 110.92731 * 179.97438 * 7 6 3 9 9 C 1.39674 * 107.86306 * 359.97438 * 8 7 6 10 10 C 1.36601 * 125.19288 * 125.19618 * 6 3 2 11 11 C 1.47165 * 126.88184 * 0.02562 * 10 6 3 12 12 O 1.21632 * 119.99902 * 354.69328 * 11 10 6 13 13 N 1.34774 * 119.99958 * 174.69766 * 11 10 6 14 14 C 1.46499 * 120.00067 * 185.08362 * 13 11 10 15 15 C 1.52997 * 109.47148 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47168 * 180.02562 * 15 14 13 17 17 C 1.36934 * 119.99993 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00254 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00028 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47282 * 60.00225 * 21 19 17 23 23 H 1.48501 * 109.47294 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47176 * 300.00194 * 21 19 17 25 25 H 1.08997 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46985 * 300.00401 * 1 2 3 27 27 H 1.09005 * 109.46793 * 60.00130 * 1 2 3 28 28 H 1.08996 * 109.46985 * 239.99599 * 2 1 3 29 29 H 1.09005 * 109.46793 * 119.99870 * 2 1 3 30 30 H 1.09002 * 109.46621 * 60.00129 * 5 3 2 31 31 H 1.08997 * 109.47306 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47332 * 300.00192 * 5 3 2 33 33 H 1.08003 * 126.06643 * 180.26443 * 8 7 6 34 34 H 1.07997 * 127.31468 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99779 * 5.08809 * 13 11 10 36 36 H 1.08996 * 109.47255 * 300.00373 * 14 13 11 37 37 H 1.09002 * 109.46630 * 59.99987 * 14 13 11 38 38 H 1.09004 * 109.47304 * 300.00046 * 15 14 13 39 39 H 1.09002 * 109.47303 * 60.00477 * 15 14 13 40 40 H 0.97000 * 120.00133 * 0.02562 * 16 15 14 41 41 H 0.97008 * 119.99697 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5001 1.4441 -0.1203 7 7 4.3075 0.8149 0.6556 8 6 5.5501 1.0095 0.2941 9 6 5.5449 1.8456 -0.8248 10 6 4.2105 2.1147 -1.0751 11 6 3.6662 2.9546 -2.1540 12 8 2.4633 3.0291 -2.3186 13 7 4.5004 3.6410 -2.9597 14 6 3.9582 4.5629 -3.9610 15 6 5.1087 5.2086 -4.7357 16 7 4.5666 6.1309 -5.7365 17 6 5.4142 6.8284 -6.5551 18 1 6.4825 6.6990 -6.4626 19 6 4.9005 7.7019 -7.5038 20 7 3.5987 7.8600 -7.6161 21 14 6.0568 8.6540 -8.6199 22 1 6.8738 7.7018 -9.4143 23 1 5.2646 9.5121 -9.5372 24 1 6.9514 9.5056 -7.7953 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0698 1.5874 2.1492 31 1 1.9982 3.1543 1.3072 32 1 0.5490 2.1253 1.3969 33 1 6.4242 0.5933 0.7728 34 1 6.4004 2.2063 -1.3765 35 1 5.4598 3.5247 -2.8767 36 1 3.3178 4.0139 -4.6513 37 1 3.3756 5.3380 -3.4632 38 1 5.7488 5.7577 -4.0450 39 1 5.6918 4.4336 -5.2333 40 1 3.6072 6.2474 -5.8193 41 1 3.2397 8.4708 -8.2788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128459621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:24 Heat of formation + Delta-G solvation = 42.976781 kcal Electronic energy + Delta-G solvation = -21425.571474 eV Core-core repulsion = 18149.372108 eV Total energy + Delta-G solvation = -3276.199367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.71218 -39.35952 -36.76452 -35.74599 -33.96665 -31.82209 -31.61478 -30.70660 -29.20641 -27.74590 -25.18471 -24.13073 -22.80617 -22.44250 -21.57528 -20.67016 -19.66365 -18.06459 -17.19981 -16.36522 -16.10722 -15.54652 -15.38099 -15.14769 -14.61300 -14.36316 -14.25379 -13.92694 -13.72810 -13.32775 -13.20158 -12.95677 -12.87891 -12.54597 -12.07367 -11.99236 -11.53333 -11.34168 -11.15521 -11.14301 -10.88193 -10.85949 -10.81744 -10.17966 -9.99354 -9.76473 -9.38753 -9.19454 -9.02436 -8.88207 -7.02784 -5.82031 -3.13038 1.15911 2.20411 2.48926 3.13682 3.18685 3.41517 3.45949 3.47184 4.21130 4.46823 4.52871 4.58088 4.67474 4.87522 4.96173 5.05224 5.08814 5.22547 5.38068 5.43191 5.46817 5.47085 5.55756 5.61929 5.63143 5.69715 5.70870 5.89266 5.92251 5.96460 6.08361 6.32956 6.39510 6.62874 6.64632 6.65611 7.41486 7.63273 7.93740 8.09709 8.35430 9.46801 10.00743 10.35449 11.40446 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.002908 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.252411 B = 9627.316770 C =10303.976299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.128 3.872 4 H 0.138 0.862 5 C -0.160 4.160 6 N -0.249 5.249 7 N -0.276 5.276 8 C -0.008 4.008 9 C -0.191 4.191 10 C -0.035 4.035 11 C 0.588 3.412 12 O -0.542 6.542 13 N -0.704 5.704 14 C 0.112 3.888 15 C 0.144 3.856 16 N -0.729 5.729 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.404 0.596 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.386 0.614 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 -15.718 18.192 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.028 3.972 4 H 0.156 0.844 5 C -0.218 4.218 6 N -0.037 5.037 7 N -0.109 5.109 8 C -0.183 4.183 9 C -0.220 4.220 10 C -0.164 4.164 11 C 0.373 3.627 12 O -0.420 6.420 13 N -0.355 5.355 14 C -0.011 4.011 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.220 0.780 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.247 -16.097 18.772 24.830 hybrid contribution 1.436 0.940 -1.215 2.103 sum -0.812 -15.157 17.557 23.209 Atomic orbital electron populations 1.21795 0.94079 1.02429 1.02608 1.21792 0.96897 0.94387 1.03395 1.22224 0.72897 0.99372 1.02692 0.84432 1.22167 1.02661 1.00950 0.96015 1.45994 1.07524 1.31720 1.18456 1.73120 1.01755 1.17526 1.18499 1.23547 0.94384 1.02239 0.98154 1.22277 0.94895 1.03932 1.00877 1.21466 0.92238 1.05038 0.97664 1.16906 0.86070 0.79103 0.80624 1.90729 1.14501 1.64922 1.71855 1.45606 1.10134 1.43616 1.36132 1.21670 0.97794 0.91801 0.89860 1.20758 0.93370 0.92852 0.91412 1.42167 1.06768 1.49066 1.39438 1.19146 0.89813 1.17675 1.11031 0.91032 1.24781 0.95911 1.00262 0.99794 1.69657 1.10157 1.40376 1.37691 0.86220 0.79623 0.79650 0.80370 1.21155 1.21601 1.21162 0.91956 0.92026 0.91956 0.91424 0.90592 0.91333 0.91966 0.89980 0.79824 0.82168 0.76152 0.90804 0.90944 0.95633 0.95620 0.77983 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.13 -1.18 5.50 -26.73 -0.15 -1.33 16 3 C 0.13 1.42 3.02 -67.93 -0.21 1.21 16 4 H 0.14 1.77 5.32 -51.93 -0.28 1.50 16 5 C -0.16 -1.50 9.20 37.16 0.34 -1.15 16 6 N -0.25 -3.12 3.09 -50.69 -0.16 -3.28 16 7 N -0.28 -3.34 11.56 30.59 0.35 -2.99 16 8 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 9 C -0.19 -1.98 10.50 -38.98 -0.41 -2.39 16 10 C -0.04 -0.46 6.96 -82.06 -0.57 -1.03 16 11 C 0.59 8.61 7.79 -12.64 -0.10 8.51 16 12 O -0.54 -9.36 14.40 5.25 0.08 -9.29 16 13 N -0.70 -9.50 5.54 -61.47 -0.34 -9.84 16 14 C 0.11 1.85 5.79 -4.04 -0.02 1.83 16 15 C 0.14 2.74 6.37 -4.04 -0.03 2.71 16 16 N -0.73 -18.19 5.60 -59.91 -0.34 -18.53 16 17 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.60 6.56 -51.93 -0.34 0.26 16 33 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.16 1.19 7.58 -52.49 -0.40 0.80 16 35 H 0.40 4.32 7.51 -40.82 -0.31 4.01 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.39 10.19 7.67 -40.82 -0.31 9.88 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -32.69 343.30 -6.94 -39.63 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.17 Total: 9.35 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.24 Total: -0.03 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.25 Total: -61.91 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.69 -6.94 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128459621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.608 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds