Wall clock time and date at job start Tue Mar 31 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47488 * 2 1 4 4 H 1.09002 * 109.47281 * 305.00101 * 3 2 1 5 5 C 1.53007 * 109.47095 * 64.99568 * 3 2 1 6 6 N 1.46493 * 109.47453 * 184.99732 * 3 2 1 7 7 N 1.28450 * 125.19119 * 305.22472 * 6 3 2 8 8 C 1.30863 * 110.92731 * 179.97438 * 7 6 3 9 9 C 1.39674 * 107.86306 * 359.97438 * 8 7 6 10 10 C 1.36601 * 125.19288 * 125.19618 * 6 3 2 11 11 C 1.47165 * 126.88184 * 0.02562 * 10 6 3 12 12 O 1.21632 * 119.99902 * 354.69328 * 11 10 6 13 13 N 1.34774 * 119.99958 * 174.69766 * 11 10 6 14 14 C 1.46499 * 120.00067 * 185.08362 * 13 11 10 15 15 C 1.52997 * 109.47148 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47168 * 180.02562 * 15 14 13 17 17 C 1.36934 * 119.99993 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00254 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00028 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47282 * 60.00225 * 21 19 17 23 23 H 1.48501 * 109.47294 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47176 * 300.00194 * 21 19 17 25 25 H 1.08997 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46985 * 300.00401 * 1 2 3 27 27 H 1.09005 * 109.46793 * 60.00130 * 1 2 3 28 28 H 1.08996 * 109.46985 * 239.99599 * 2 1 3 29 29 H 1.09005 * 109.46793 * 119.99870 * 2 1 3 30 30 H 1.09002 * 109.46621 * 60.00129 * 5 3 2 31 31 H 1.08997 * 109.47306 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47332 * 300.00192 * 5 3 2 33 33 H 1.08003 * 126.06643 * 180.26443 * 8 7 6 34 34 H 1.07997 * 127.31468 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99779 * 5.08809 * 13 11 10 36 36 H 1.08996 * 109.47255 * 300.00373 * 14 13 11 37 37 H 1.09002 * 109.46630 * 59.99987 * 14 13 11 38 38 H 1.09004 * 109.47304 * 300.00046 * 15 14 13 39 39 H 1.09002 * 109.47303 * 60.00477 * 15 14 13 40 40 H 0.97000 * 120.00133 * 0.02562 * 16 15 14 41 41 H 0.97008 * 119.99697 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5001 1.4441 -0.1203 7 7 4.3075 0.8149 0.6556 8 6 5.5501 1.0095 0.2941 9 6 5.5449 1.8456 -0.8248 10 6 4.2105 2.1147 -1.0751 11 6 3.6662 2.9546 -2.1540 12 8 2.4633 3.0291 -2.3186 13 7 4.5004 3.6410 -2.9597 14 6 3.9582 4.5629 -3.9610 15 6 5.1087 5.2086 -4.7357 16 7 4.5666 6.1309 -5.7365 17 6 5.4142 6.8284 -6.5551 18 1 6.4825 6.6990 -6.4626 19 6 4.9005 7.7019 -7.5038 20 7 3.5987 7.8600 -7.6161 21 14 6.0568 8.6540 -8.6199 22 1 6.8738 7.7018 -9.4143 23 1 5.2646 9.5121 -9.5372 24 1 6.9514 9.5056 -7.7953 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0698 1.5874 2.1492 31 1 1.9982 3.1543 1.3072 32 1 0.5490 2.1253 1.3969 33 1 6.4242 0.5933 0.7728 34 1 6.4004 2.2063 -1.3765 35 1 5.4598 3.5247 -2.8767 36 1 3.3178 4.0139 -4.6513 37 1 3.3756 5.3380 -3.4632 38 1 5.7488 5.7577 -4.0450 39 1 5.6918 4.4336 -5.2333 40 1 3.6072 6.2474 -5.8193 41 1 3.2397 8.4708 -8.2788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128459621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:24 Heat of formation + Delta-G solvation = 20.156266 kcal Electronic energy + Delta-G solvation = -21426.561046 eV Core-core repulsion = 18149.372108 eV Total energy + Delta-G solvation = -3277.188939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.58605 -40.55328 -37.62921 -37.23868 -35.58117 -33.33371 -32.54174 -31.96467 -29.96116 -29.34067 -26.07698 -25.70572 -24.11425 -23.30972 -23.00515 -21.65046 -20.64779 -19.35502 -18.90210 -17.44861 -17.14055 -16.71233 -16.46330 -16.39861 -16.12943 -15.57241 -15.16709 -15.13318 -14.97447 -14.75390 -14.66847 -14.13584 -13.65550 -13.22889 -13.11928 -13.04265 -12.79659 -12.74290 -12.63625 -12.54184 -12.14516 -12.10128 -11.87885 -11.85892 -11.76261 -11.07719 -10.97382 -10.44593 -10.09861 -9.98359 -9.05880 -7.96089 -5.27335 0.18705 1.29853 1.49782 1.53018 1.59111 1.66735 2.05286 2.11313 2.58387 3.38366 3.41528 3.47097 3.75183 3.92538 3.97368 4.09765 4.13693 4.17379 4.20710 4.34100 4.36855 4.51369 4.55667 4.60462 4.73102 4.85228 4.88842 4.92608 4.98213 5.02271 5.12799 5.18203 5.26935 5.31223 5.49622 5.58049 5.78240 6.24647 6.32808 6.97116 7.10281 7.31239 8.02899 8.25560 9.27371 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.002908 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.252411 B = 9627.316770 C =10303.976299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.122 3.878 4 H 0.116 0.884 5 C -0.153 4.153 6 N -0.258 5.258 7 N -0.290 5.290 8 C -0.008 4.008 9 C -0.174 4.174 10 C -0.065 4.065 11 C 0.588 3.412 12 O -0.575 6.575 13 N -0.691 5.691 14 C 0.130 3.870 15 C 0.148 3.852 16 N -0.747 5.747 17 C -0.249 4.249 18 H 0.084 0.916 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.978 3.022 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.275 1.275 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.219 0.781 34 H 0.192 0.808 35 H 0.420 0.580 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.374 0.626 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -16.607 19.298 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.134 0.866 5 C -0.210 4.210 6 N -0.047 5.047 7 N -0.123 5.123 8 C -0.183 4.183 9 C -0.203 4.203 10 C -0.193 4.193 11 C 0.374 3.626 12 O -0.456 6.456 13 N -0.343 5.343 14 C 0.006 3.994 15 C 0.022 3.978 16 N -0.390 5.390 17 C -0.380 4.380 18 H 0.102 0.898 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.807 3.193 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.201 1.201 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.236 0.764 34 H 0.209 0.791 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.206 0.794 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.195 -17.020 19.913 26.196 hybrid contribution 0.871 1.128 -1.469 2.047 sum 0.676 -15.892 18.444 24.355 Atomic orbital electron populations 1.21794 0.92639 1.03327 1.02835 1.21731 0.98076 0.93121 1.02720 1.22270 0.72736 1.00243 1.02582 0.86645 1.22127 1.03902 0.99849 0.95153 1.46147 1.07943 1.31993 1.18608 1.73116 1.02660 1.17747 1.18766 1.24203 0.94679 1.01542 0.97859 1.22718 0.94542 1.02581 1.00499 1.21402 0.93486 1.06348 0.98072 1.17183 0.85643 0.78919 0.80826 1.90719 1.16037 1.66083 1.72772 1.45338 1.10909 1.42846 1.35242 1.21241 0.96661 0.91667 0.89865 1.20850 0.94052 0.92297 0.90644 1.42401 1.06147 1.50002 1.40496 1.19617 0.90689 1.17016 1.10702 0.89840 1.25656 0.97385 1.01939 1.01854 1.69827 1.12076 1.41518 1.38673 0.85145 0.77619 0.78235 0.78335 1.20119 1.22380 1.20115 0.90719 0.90684 0.92830 0.92922 0.90250 0.91007 0.93314 0.88049 0.76414 0.79135 0.74253 0.92248 0.92188 0.94193 0.94251 0.79394 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 71.98 0.70 -1.41 16 2 C -0.12 -2.19 5.50 30.59 0.17 -2.02 16 3 C 0.12 2.72 3.02 44.99 0.14 2.85 16 4 H 0.12 3.13 5.32 -2.39 -0.01 3.11 16 5 C -0.15 -2.79 9.20 71.98 0.66 -2.13 16 6 N -0.26 -6.34 3.09 -314.30 -0.97 -7.31 16 7 N -0.29 -6.57 11.56 -57.14 -0.66 -7.23 16 8 C -0.01 -0.14 12.03 85.18 1.02 0.89 16 9 C -0.17 -3.15 10.50 22.66 0.24 -2.91 16 10 C -0.07 -1.62 6.96 40.79 0.28 -1.33 16 11 C 0.59 17.14 7.79 86.59 0.67 17.82 16 12 O -0.58 -20.55 14.40 -4.13 -0.06 -20.61 16 13 N -0.69 -17.95 5.54 -466.64 -2.59 -20.54 16 14 C 0.13 4.27 5.79 86.38 0.50 4.78 16 15 C 0.15 5.44 6.37 86.38 0.55 6.00 16 16 N -0.75 -37.20 5.60 -343.45 -1.92 -39.12 16 17 C -0.25 -13.55 9.99 84.04 0.84 -12.71 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 21 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.86 6.56 -2.39 -0.02 0.84 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.39 6.56 -2.39 -0.02 1.38 16 33 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.19 2.08 7.58 -2.91 -0.02 2.06 16 35 H 0.42 8.01 7.51 -92.71 -0.70 7.32 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.37 20.16 7.67 -92.71 -0.71 19.45 16 41 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -70.80 343.30 1.98 -68.81 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.36 Total: 31.80 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.24 Total: 5.98 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -5.86 Total: -133.23 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.80 1.98 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128459621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.969 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds