Wall clock time and date at job start Tue Mar 31 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21278 * 120.00264 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00152 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46850 * 179.97438 * 12 11 9 14 14 N 1.46498 * 109.46850 * 179.97438 * 13 12 11 15 15 C 1.36942 * 119.99994 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99701 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00153 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00235 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47011 * 89.99841 * 19 17 15 21 21 H 1.48500 * 109.47196 * 209.99568 * 19 17 15 22 22 H 1.48497 * 109.47011 * 330.00035 * 19 17 15 23 23 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 32 32 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 33 33 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 34 34 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 35 35 H 0.97005 * 119.99680 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.47027 * 299.99692 * 12 11 9 37 37 H 1.08997 * 109.47113 * 59.99638 * 12 11 9 38 38 H 1.08993 * 109.47381 * 299.99812 * 13 12 11 39 39 H 1.08997 * 109.47269 * 60.00087 * 13 12 11 40 40 H 0.97005 * 120.00168 * 359.97438 * 14 13 12 41 41 H 0.96999 * 120.00420 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4459 -1.2455 11 7 4.9825 -5.2860 -2.4684 12 6 6.0966 -5.7647 -1.6463 13 6 6.5813 -7.1141 -2.1801 14 7 7.6957 -7.5925 -1.3583 15 6 8.2965 -8.7884 -1.6486 16 1 7.9484 -9.3790 -2.4831 17 6 9.3521 -9.2419 -0.8696 18 7 9.7760 -8.5223 0.1477 19 14 10.1712 -10.8735 -1.2651 20 1 11.2925 -10.6477 -2.2122 21 1 10.6940 -11.4808 -0.0149 22 1 9.1783 -11.7889 -1.8827 23 7 2.3857 -2.0399 -1.2766 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.9883 0.8861 -2.6859 32 1 2.8977 -0.9843 -4.2880 33 1 2.4289 -4.3371 -2.9898 34 1 3.5791 -3.5005 -4.0602 35 1 4.6703 -5.8162 -3.2184 36 1 6.9130 -5.0436 -1.6854 37 1 5.7634 -5.8807 -0.6150 38 1 5.7647 -7.8350 -2.1406 39 1 6.9143 -6.9985 -3.2115 40 1 8.0086 -7.0618 -0.6090 41 1 10.5134 -8.8394 0.6923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131571398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:10 Heat of formation + Delta-G solvation = 45.939185 kcal Electronic energy + Delta-G solvation = -20795.462697 eV Core-core repulsion = 17519.391790 eV Total energy + Delta-G solvation = -3276.070907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37879 -39.28850 -36.17752 -35.53721 -33.73817 -32.16637 -31.09214 -30.04772 -28.65876 -27.74381 -27.02082 -23.67017 -22.91899 -21.45697 -20.79506 -20.26287 -19.47856 -17.36895 -17.19920 -16.76249 -15.61056 -15.49857 -15.30343 -14.70832 -14.54801 -14.28570 -13.95642 -13.65883 -13.55790 -13.15475 -13.01730 -12.97263 -12.73003 -12.68268 -12.42717 -12.13703 -11.75969 -11.49554 -11.30203 -11.06225 -10.79044 -10.76403 -10.57994 -10.09410 -9.81224 -9.62066 -9.25819 -8.93195 -8.72525 -8.62605 -6.95955 -5.76607 -3.07200 1.85119 2.33550 2.66479 2.89298 3.44354 3.45760 3.50648 3.52612 4.13149 4.45859 4.54394 4.59314 4.62106 4.67173 4.96642 5.01723 5.06278 5.19758 5.21935 5.31314 5.39570 5.51040 5.53812 5.59570 5.62016 5.69622 5.76645 5.85187 5.95107 6.02539 6.22197 6.55390 6.58926 6.76793 6.83863 6.96003 7.68528 7.72090 7.75245 8.40879 8.48666 9.52168 10.07772 10.42410 11.46068 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.002385 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.176170 B =11738.669669 C =12112.449057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.367 5.367 5 C 0.049 3.951 6 C -0.267 4.267 7 C 0.082 3.918 8 C -0.059 4.059 9 C 0.511 3.489 10 O -0.525 6.525 11 N -0.726 5.726 12 C 0.113 3.887 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 N -0.261 5.261 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.859 19.860 -6.665 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.150 5.150 5 C -0.096 4.096 6 C -0.296 4.296 7 C -0.085 4.085 8 C -0.101 4.101 9 C 0.295 3.705 10 O -0.401 6.401 11 N -0.379 5.379 12 C -0.011 4.011 13 C 0.017 3.983 14 N -0.375 5.375 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.082 5.082 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.220 0.780 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.754 19.789 -4.728 29.064 hybrid contribution 0.623 -0.572 -1.134 1.415 sum -20.131 19.217 -5.862 28.441 Atomic orbital electron populations 1.22231 0.93728 1.03306 1.02872 1.21244 0.94608 0.92733 0.86254 1.22187 1.02585 0.93986 1.03426 1.48846 1.50428 1.07501 1.08207 1.22351 1.01831 0.99730 0.85724 1.21310 1.14464 0.92441 1.01424 1.21519 0.99984 0.95473 0.91541 1.20026 0.97424 0.92662 0.99945 1.20322 0.83760 0.81108 0.85270 1.90749 1.63858 1.55937 1.29521 1.45899 1.35992 1.21843 1.34143 1.21534 0.88144 0.96562 0.94877 1.20757 0.91493 0.91334 0.94737 1.42208 1.36559 1.23530 1.35229 1.19200 1.11112 0.96207 1.10851 0.91017 1.24788 0.99231 0.99009 0.97940 1.69672 1.29741 1.38619 1.19911 0.86142 0.79395 0.83264 0.77074 1.21647 1.21716 1.20708 1.77448 1.19095 0.92619 1.19030 0.91590 0.90541 0.92015 0.87891 0.91653 0.90014 0.91324 0.81449 0.83658 0.87392 0.87030 0.76737 0.91467 0.91449 0.95793 0.95803 0.78018 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.52 37.16 0.35 -0.69 16 2 C 0.15 1.28 3.93 -67.93 -0.27 1.01 16 3 C -0.16 -0.94 8.84 37.16 0.33 -0.61 16 4 N -0.37 -4.26 3.52 -54.87 -0.19 -4.45 16 5 C 0.05 0.48 10.59 -17.22 -0.18 0.30 16 6 C -0.27 -2.89 10.72 -40.01 -0.43 -3.32 16 7 C 0.08 1.09 6.01 -82.41 -0.50 0.59 16 8 C -0.06 -0.64 6.28 -29.04 -0.18 -0.82 16 9 C 0.51 7.78 7.82 -10.99 -0.09 7.69 16 10 O -0.53 -10.59 15.56 5.56 0.09 -10.51 16 11 N -0.73 -10.28 5.56 -60.30 -0.33 -10.61 16 12 C 0.11 2.03 5.79 -4.04 -0.02 2.01 16 13 C 0.14 2.91 6.37 -4.04 -0.03 2.89 16 14 N -0.73 -19.02 5.60 -59.91 -0.34 -19.35 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 19 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 N -0.26 -3.95 11.92 33.67 0.40 -3.54 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.17 1.01 7.27 -52.49 -0.38 0.63 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.11 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 10.67 7.67 -40.82 -0.31 10.36 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -37.31 349.91 -7.11 -44.42 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.45 Total: 7.73 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.26 Total: 1.52 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: 0.26 Total: -66.00 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.31 -7.11 -44.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131571398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.363 kcal (2) G-P(sol) polarization free energy of solvation -37.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds