Wall clock time and date at job start Tue Mar 31 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30857 * 125.41670 * 2 1 4 4 C 1.33323 * 109.68383 * 179.78579 * 3 2 1 5 5 C 1.36657 * 107.78436 * 0.37215 * 4 3 2 6 6 C 1.46765 * 126.84806 * 179.89573 * 5 4 3 7 7 O 1.21689 * 119.99585 * 359.69128 * 6 5 4 8 8 N 1.34771 * 120.00455 * 179.68895 * 6 5 4 9 9 C 1.46508 * 119.99837 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47317 * 35.00152 * 9 8 6 11 11 C 1.52999 * 109.46657 * 274.99636 * 9 8 6 12 12 C 1.53002 * 109.46662 * 155.00121 * 9 8 6 13 13 C 1.53003 * 109.47269 * 294.99336 * 12 9 8 14 14 H 1.09000 * 109.46953 * 305.00936 * 13 12 9 15 15 C 1.52996 * 109.47332 * 185.00423 * 13 12 9 16 16 N 1.46505 * 109.46807 * 65.00478 * 13 12 9 17 17 C 1.36931 * 119.99788 * 205.00000 * 16 13 12 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 13 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 13 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 N 1.34496 * 125.41660 * 180.02562 * 2 1 3 26 26 H 0.97000 * 126.47441 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47615 * 269.98020 * 1 2 3 28 28 H 1.09004 * 109.47168 * 29.97851 * 1 2 3 29 29 H 1.08999 * 109.47158 * 149.97987 * 1 2 3 30 30 H 1.07997 * 126.10874 * 180.28154 * 4 3 2 31 31 H 0.96999 * 120.00044 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.46944 * 60.00616 * 11 9 8 33 33 H 1.09010 * 109.46692 * 179.97438 * 11 9 8 34 34 H 1.08998 * 109.47359 * 299.99941 * 11 9 8 35 35 H 1.09000 * 109.46766 * 174.99852 * 12 9 8 36 36 H 1.08992 * 109.47398 * 54.99945 * 12 9 8 37 37 H 1.09002 * 109.46807 * 300.00318 * 15 13 12 38 38 H 1.08998 * 109.47019 * 59.99816 * 15 13 12 39 39 H 1.08998 * 109.47099 * 180.02562 * 15 13 12 40 40 H 0.97000 * 119.99792 * 24.99795 * 16 13 12 41 41 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0047 5 6 3.5975 -0.6608 -0.0007 6 6 4.8028 -1.4983 -0.0004 7 8 5.9038 -0.9800 -0.0007 8 7 4.6902 -2.8413 0.0002 9 6 5.8934 -3.6772 0.0010 10 1 6.6719 -3.1929 0.5904 11 6 6.3843 -3.8656 -1.4358 12 6 5.5660 -5.0415 0.6112 13 6 5.1947 -4.8653 2.0850 14 1 5.9976 -4.3395 2.6015 15 6 4.9888 -6.2388 2.7268 16 7 3.9570 -4.0881 2.1871 17 6 3.6904 -3.3716 3.3231 18 1 4.3926 -3.3790 4.1437 19 6 2.5204 -2.6305 3.4176 20 7 1.6649 -2.6209 2.4175 21 14 2.1602 -1.6468 4.9643 22 1 3.2368 -0.6463 5.1765 23 1 0.8579 -0.9493 4.8152 24 1 2.0996 -2.5635 6.1310 25 7 2.2864 -1.0961 -0.0005 26 1 1.9849 -2.0180 -0.0013 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 4.3978 1.3722 0.0101 31 1 3.8126 -3.2544 0.0001 32 1 6.6175 -2.8936 -1.8705 33 1 7.2798 -4.4872 -1.4352 34 1 5.6058 -4.3499 -2.0252 35 1 6.4359 -5.6935 0.5311 36 1 4.7276 -5.4872 0.0760 37 1 4.1859 -6.7646 2.2101 38 1 5.9096 -6.8171 2.6507 39 1 4.7239 -6.1132 3.7766 40 1 3.3265 -4.0810 1.4500 41 1 0.8471 -2.1034 2.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133916610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:20 Heat of formation + Delta-G solvation = 20.891475 kcal Electronic energy + Delta-G solvation = -23432.872653 eV Core-core repulsion = 20155.715595 eV Total energy + Delta-G solvation = -3277.157058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.49534 -39.03263 -36.78561 -34.25662 -32.62073 -31.80964 -31.44938 -30.34798 -28.62851 -26.81668 -26.37967 -23.76940 -22.84206 -20.86342 -20.33226 -19.94644 -19.53789 -17.88795 -17.29150 -15.88050 -15.40119 -15.01752 -14.91970 -14.14411 -13.90274 -13.87544 -13.47874 -13.25952 -12.97401 -12.78979 -12.74605 -12.25452 -12.15236 -12.09062 -11.93870 -11.82587 -11.73279 -11.08435 -10.88700 -10.81319 -10.44613 -10.34315 -10.01133 -9.85459 -9.76478 -9.43339 -9.33102 -9.04494 -8.50109 -7.78524 -7.06148 -5.97306 -3.17712 2.02649 3.38180 3.40934 3.42896 3.47131 3.60999 3.79405 4.09774 4.51536 4.88806 5.02191 5.32722 5.40564 5.44936 5.50872 5.57856 5.61666 5.79355 5.81830 5.84559 5.90038 5.93861 6.06064 6.10693 6.16817 6.22564 6.30792 6.36536 6.48277 6.51744 6.55383 6.77754 6.97003 7.06412 7.18928 7.60245 7.92956 8.09282 8.27171 8.55100 8.80372 9.39525 9.91076 10.27112 11.28209 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.009387 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.844957 B = 2982.273343 C = 4532.930593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.231 3.769 3 N -0.510 5.510 4 C 0.046 3.954 5 C -0.070 4.070 6 C 0.607 3.393 7 O -0.552 6.552 8 N -0.697 5.697 9 C 0.151 3.849 10 H 0.085 0.915 11 C -0.162 4.162 12 C -0.133 4.133 13 C 0.168 3.832 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.716 5.716 17 C -0.222 4.222 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.942 5.942 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.289 1.289 25 N -0.506 5.506 26 H 0.429 0.571 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.172 0.828 31 H 0.398 0.602 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.374 0.626 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -3.581 -7.968 8.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.033 4.033 3 N -0.231 5.231 4 C -0.108 4.108 5 C -0.189 4.189 6 C 0.395 3.605 7 O -0.431 6.431 8 N -0.348 5.348 9 C 0.046 3.954 10 H 0.103 0.897 11 C -0.221 4.221 12 C -0.172 4.172 13 C 0.058 3.942 14 H 0.067 0.933 15 C -0.223 4.223 16 N -0.358 5.358 17 C -0.353 4.353 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.593 5.593 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.216 1.216 25 N -0.110 5.110 26 H 0.271 0.729 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.189 0.811 31 H 0.234 0.766 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.208 0.792 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.812 -2.379 -7.799 8.352 hybrid contribution -0.746 -0.999 0.997 1.596 sum 1.067 -3.377 -6.802 7.669 Atomic orbital electron populations 1.20150 0.85266 1.03187 1.03776 1.23084 0.95486 0.81997 1.02775 1.70050 1.02062 1.28682 1.22314 1.22365 0.94512 0.91394 1.02568 1.20976 0.84325 0.95494 1.18070 1.16751 0.86788 0.81657 0.75336 1.90751 1.26292 1.73678 1.52352 1.45851 1.09569 1.05338 1.74089 1.20829 0.88086 0.90909 0.95608 0.89663 1.22213 1.00820 1.02010 0.97044 1.22212 1.01593 0.95594 0.97806 1.20308 0.90499 0.91332 0.92011 0.93279 1.22406 0.99391 0.98749 1.01737 1.42410 1.19521 1.55625 1.18280 1.19173 1.02388 1.19794 0.93936 0.91516 1.24435 0.97122 1.00619 0.97916 1.69380 1.11872 1.46489 1.31516 0.86281 0.77227 0.79926 0.82909 1.21483 1.21766 1.21644 1.43166 1.05302 1.10764 1.51732 0.72858 0.89942 0.89829 0.90876 0.81064 0.76553 0.92255 0.91997 0.92902 0.90640 0.91856 0.93653 0.94498 0.92857 0.79176 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.51 36.00 0.38 -0.52 16 2 C 0.23 4.17 8.12 -155.61 -1.26 2.91 16 3 N -0.51 -10.14 11.20 -10.58 -0.12 -10.26 16 4 C 0.05 0.94 11.66 -17.48 -0.20 0.73 16 5 C -0.07 -1.41 7.08 -82.14 -0.58 -1.99 16 6 C 0.61 12.35 7.75 -12.82 -0.10 12.25 16 7 O -0.55 -12.42 16.57 5.20 0.09 -12.34 16 8 N -0.70 -12.22 3.80 -55.08 -0.21 -12.43 16 9 C 0.15 2.35 2.57 -67.93 -0.17 2.17 16 10 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 11 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 12 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 13 C 0.17 2.99 2.89 -67.93 -0.20 2.79 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.67 9.49 37.16 0.35 -2.32 16 16 N -0.72 -15.27 3.84 -53.42 -0.21 -15.47 16 17 C -0.22 -5.58 9.93 -15.06 -0.15 -5.73 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.94 -23.09 11.61 55.49 0.64 -22.45 16 21 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 N -0.51 -9.28 5.49 -7.02 -0.04 -9.32 16 26 H 0.43 7.59 7.48 -40.82 -0.31 7.28 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.17 3.19 8.06 -52.49 -0.42 2.77 16 31 H 0.40 6.88 5.75 -40.82 -0.23 6.64 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.37 8.01 5.70 -40.82 -0.23 7.78 16 41 H 0.25 6.24 8.31 -40.82 -0.34 5.90 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -28.61 341.14 -7.73 -36.34 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -6.20 Total: 17.56 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.80 Total: 6.27 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: 0.07 Total: -69.93 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.61 -7.73 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133916610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.227 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds