Wall clock time and date at job start Tue Mar 31 2020 01:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30856 * 125.41482 * 2 1 4 4 C 1.33325 * 109.68309 * 179.78528 * 3 2 1 5 5 C 1.36662 * 107.78253 * 0.38293 * 4 3 2 6 6 C 1.46766 * 126.84302 * 179.89804 * 5 4 3 7 7 O 1.21686 * 119.99654 * 359.68237 * 6 5 4 8 8 N 1.34777 * 119.99966 * 179.68349 * 6 5 4 9 9 C 1.46502 * 119.99630 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47395 * 34.99808 * 9 8 6 11 11 C 1.53002 * 109.46959 * 274.99334 * 9 8 6 12 12 C 1.53003 * 109.47138 * 154.99830 * 9 8 6 13 13 C 1.52997 * 109.46992 * 294.99861 * 12 9 8 14 14 H 1.09001 * 109.46922 * 54.99919 * 13 12 9 15 15 C 1.53006 * 109.47164 * 174.99670 * 13 12 9 16 16 N 1.46496 * 109.47194 * 294.99585 * 13 12 9 17 17 C 1.36940 * 120.00276 * 154.99852 * 16 13 12 18 18 H 1.08002 * 119.99359 * 0.02562 * 17 16 13 19 19 C 1.38803 * 120.00232 * 180.02562 * 17 16 13 20 20 N 1.31619 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99991 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46976 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47193 * 119.99974 * 21 19 17 24 24 H 1.48510 * 109.47034 * 240.00106 * 21 19 17 25 25 N 1.34494 * 125.41687 * 180.02562 * 2 1 3 26 26 H 0.96991 * 126.47547 * 359.97438 * 25 2 1 27 27 H 1.08994 * 109.47014 * 269.97134 * 1 2 3 28 28 H 1.09000 * 109.47276 * 29.97409 * 1 2 3 29 29 H 1.09007 * 109.46898 * 149.97451 * 1 2 3 30 30 H 1.07991 * 126.10791 * 180.28113 * 4 3 2 31 31 H 0.96990 * 120.00138 * 359.97438 * 8 6 5 32 32 H 1.08990 * 109.47447 * 300.00815 * 11 9 8 33 33 H 1.09000 * 109.46671 * 60.00842 * 11 9 8 34 34 H 1.09005 * 109.46890 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47471 * 174.99604 * 12 9 8 36 36 H 1.09006 * 109.46544 * 54.99764 * 12 9 8 37 37 H 1.09001 * 109.47002 * 59.99738 * 15 13 12 38 38 H 1.08993 * 109.46955 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47050 * 300.00004 * 15 13 12 40 40 H 0.97003 * 119.99825 * 335.00349 * 16 13 12 41 41 H 0.96996 * 120.00427 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7050 0.0047 5 6 3.5976 -0.6608 -0.0009 6 6 4.8029 -1.4982 -0.0007 7 8 5.9038 -0.9799 -0.0009 8 7 4.6903 -2.8413 -0.0002 9 6 5.8934 -3.6771 0.0006 10 1 6.6720 -3.1928 0.5901 11 6 6.3845 -3.8655 -1.4362 12 6 5.5662 -5.0416 0.6106 13 6 5.1948 -4.8654 2.0843 14 1 4.3818 -4.1445 2.1705 15 6 4.7475 -6.2098 2.6618 16 7 6.3600 -4.3784 2.8268 17 6 6.1865 -3.6732 3.9877 18 1 5.1905 -3.4763 4.3561 19 6 7.2906 -3.2113 4.6908 20 7 8.5043 -3.4508 4.2416 21 14 7.0538 -2.2499 6.2749 22 1 5.6027 -2.1165 6.5607 23 1 7.7152 -2.9684 7.3935 24 1 7.6553 -0.8999 6.1291 25 7 2.2864 -1.0961 -0.0005 26 1 1.9850 -2.0179 -0.0006 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 4.3977 1.3722 0.0101 31 1 3.8127 -3.2544 0.0004 32 1 5.6060 -4.3496 -2.0257 33 1 6.6177 -2.8935 -1.8708 34 1 7.2799 -4.4870 -1.4356 35 1 6.4361 -5.6935 0.5305 36 1 4.7276 -5.4871 0.0753 37 1 5.5605 -6.9308 2.5756 38 1 4.4825 -6.0842 3.7116 39 1 3.8805 -6.5722 2.1095 40 1 7.2545 -4.5555 2.4959 41 1 9.2758 -3.1277 4.7327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133916612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:28 Heat of formation + Delta-G solvation = 17.470401 kcal Electronic energy + Delta-G solvation = -22301.878223 eV Core-core repulsion = 19024.572816 eV Total energy + Delta-G solvation = -3277.305407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.25019 -39.31715 -36.83529 -34.54557 -32.96540 -32.21075 -31.93765 -30.54564 -28.62393 -27.42170 -26.36913 -23.69574 -23.23775 -21.44790 -20.61553 -20.31030 -19.75587 -18.63438 -17.19246 -15.99148 -15.95498 -15.69677 -14.81523 -14.51750 -14.12232 -14.01662 -13.81798 -13.64058 -13.40619 -13.10013 -12.84790 -12.72766 -12.66363 -12.18533 -12.05777 -11.77446 -11.66421 -11.08065 -10.83614 -10.64481 -10.48718 -10.40232 -10.24502 -10.22819 -9.91122 -9.77151 -9.62872 -8.89413 -8.86959 -8.47503 -6.92608 -5.72846 -3.01217 1.32765 2.74277 2.79839 3.30497 3.46319 3.51618 3.54081 3.54885 4.20815 4.62738 4.71814 4.91796 5.07982 5.18922 5.22172 5.34977 5.41210 5.46525 5.60607 5.62071 5.64974 5.74670 5.83503 5.89680 5.96148 6.07555 6.23594 6.31703 6.38880 6.50576 6.53126 6.64313 6.73361 6.86195 7.02547 7.08174 7.61310 7.72497 7.87478 8.39508 8.45369 9.56971 10.13194 10.47351 11.49839 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.005473 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.450365 B = 5114.527244 C = 5952.900024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.230 3.770 3 N -0.496 5.496 4 C 0.066 3.934 5 C -0.079 4.079 6 C 0.594 3.406 7 O -0.515 6.515 8 N -0.715 5.715 9 C 0.144 3.856 10 H 0.109 0.891 11 C -0.161 4.161 12 C -0.131 4.131 13 C 0.172 3.828 14 H 0.042 0.958 15 C -0.165 4.165 16 N -0.720 5.720 17 C -0.236 4.236 18 H 0.066 0.934 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.902 3.098 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.291 1.291 25 N -0.552 5.552 26 H 0.419 0.581 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.184 0.816 31 H 0.387 0.613 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 -0.718 -12.675 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 N -0.217 5.217 4 C -0.087 4.087 5 C -0.195 4.195 6 C 0.379 3.621 7 O -0.390 6.390 8 N -0.365 5.365 9 C 0.041 3.959 10 H 0.127 0.873 11 C -0.219 4.219 12 C -0.170 4.170 13 C 0.062 3.938 14 H 0.060 0.940 15 C -0.226 4.226 16 N -0.362 5.362 17 C -0.367 4.367 18 H 0.084 0.916 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.733 3.267 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.218 1.218 25 N -0.157 5.157 26 H 0.258 0.742 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.201 0.799 31 H 0.219 0.781 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.945 0.565 -12.527 19.509 hybrid contribution -0.035 -1.123 0.950 1.471 sum -14.980 -0.558 -11.577 18.940 Atomic orbital electron populations 1.20278 0.84416 1.04304 1.04040 1.23412 0.95799 0.81681 1.02500 1.70177 1.02229 1.28236 1.21050 1.22648 0.94619 0.91436 1.00013 1.21352 0.83670 0.96178 1.18252 1.16774 0.86814 0.81712 0.76763 1.90885 1.25673 1.73039 1.49395 1.45864 1.09670 1.05519 1.75444 1.21090 0.87674 0.91113 0.96064 0.87314 1.22187 1.01036 1.02041 0.96671 1.22182 1.01866 0.95511 0.97417 1.20206 0.91523 0.93295 0.88794 0.93962 1.22464 0.99201 0.99696 1.01205 1.42388 1.02910 1.64815 1.26041 1.19168 0.92382 1.26266 0.98921 0.91579 1.24686 0.95277 1.01454 0.99196 1.69649 0.96911 1.51006 1.40246 0.86197 0.77109 0.79762 0.83594 1.20756 1.21926 1.21787 1.43212 1.06200 1.10064 1.56253 0.74212 0.89626 0.88799 0.90561 0.79912 0.78085 0.93224 0.92377 0.91513 0.90380 0.92169 0.93432 0.92894 0.94827 0.78292 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.23 2.54 8.12 -155.61 -1.26 1.27 16 3 N -0.50 -7.13 11.20 -10.58 -0.12 -7.25 16 4 C 0.07 1.01 11.66 -17.47 -0.20 0.80 16 5 C -0.08 -1.15 7.08 -82.14 -0.58 -1.73 16 6 C 0.59 10.06 7.76 -12.81 -0.10 9.96 16 7 O -0.52 -10.96 16.57 5.20 0.09 -10.87 16 8 N -0.71 -10.16 4.44 -55.08 -0.24 -10.41 16 9 C 0.14 2.27 2.52 -67.93 -0.17 2.10 16 10 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16 11 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 12 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 13 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 14 H 0.04 0.80 7.56 -51.93 -0.39 0.41 16 15 C -0.17 -2.81 9.49 37.16 0.35 -2.45 16 16 N -0.72 -17.48 4.49 -53.43 -0.24 -17.72 16 17 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 21 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 N -0.55 -5.84 6.07 -7.02 -0.04 -5.88 16 26 H 0.42 2.94 8.32 -40.82 -0.34 2.60 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.39 4.17 7.84 -40.82 -0.32 3.85 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -35.31 348.20 -7.75 -43.07 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.36 Total: 11.51 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.79 Total: 1.95 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: 0.08 Total: -68.97 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.31 -7.75 -43.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133916612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.540 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds