Wall clock time and date at job start Tue Mar 31 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47659 * 2 1 4 4 N 1.46500 * 109.47488 * 120.00104 * 2 1 3 5 5 N 1.28443 * 125.18748 * 294.84249 * 4 2 1 6 6 C 1.30867 * 110.92891 * 179.97438 * 5 4 2 7 7 C 1.39673 * 107.85750 * 0.25450 * 6 5 4 8 8 C 1.36599 * 125.19314 * 114.83391 * 4 2 1 9 9 C 1.47165 * 126.88328 * 0.03673 * 8 4 2 10 10 O 1.21629 * 119.99668 * 4.94384 * 9 8 4 11 11 N 1.34776 * 119.99774 * 184.93891 * 9 8 4 12 12 C 1.46500 * 119.99735 * 185.10358 * 11 9 8 13 13 C 1.53003 * 109.47194 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47376 * 180.02562 * 13 12 11 15 15 N 1.46493 * 109.47460 * 179.97438 * 14 13 12 16 16 C 1.36934 * 120.00414 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99595 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00080 * 179.97438 * 16 15 14 19 19 N 1.31610 * 120.00191 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99874 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47497 * 59.99688 * 20 18 16 22 22 H 1.48503 * 109.47458 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47162 * 299.99961 * 20 18 16 24 24 H 1.08998 * 109.47065 * 59.99486 * 1 2 3 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46722 * 300.00193 * 1 2 3 27 27 H 1.09002 * 109.47406 * 239.99699 * 2 1 3 28 28 H 1.08994 * 109.47940 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47205 * 300.00229 * 3 2 1 30 30 H 1.09001 * 109.47403 * 59.99714 * 3 2 1 31 31 H 1.08001 * 126.07322 * 179.97438 * 6 5 4 32 32 H 1.08005 * 127.32098 * 179.70103 * 7 6 5 33 33 H 0.97002 * 120.00401 * 5.10461 * 11 9 8 34 34 H 1.09000 * 109.47333 * 300.00216 * 12 11 9 35 35 H 1.08994 * 109.47062 * 60.00287 * 12 11 9 36 36 H 1.09007 * 109.46520 * 299.99716 * 13 12 11 37 37 H 1.08999 * 109.47101 * 59.99195 * 13 12 11 38 38 H 1.09000 * 109.46609 * 299.99893 * 14 13 12 39 39 H 1.08999 * 109.47390 * 59.99144 * 14 13 12 40 40 H 0.97006 * 119.99883 * 359.97438 * 15 14 13 41 41 H 0.96998 * 120.00263 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.8494 -0.2881 2.4041 6 6 2.3995 -1.1170 3.2543 7 6 2.9855 -2.1534 2.5240 8 6 2.7229 -1.8609 1.1970 9 6 3.1270 -2.6495 0.0220 10 8 2.9112 -2.2264 -1.0978 11 7 3.7362 -3.8403 0.1868 12 6 4.2387 -4.5734 -0.9779 13 6 4.8804 -5.8839 -0.5178 14 6 5.4057 -6.6492 -1.7340 15 7 6.0206 -7.9037 -1.2934 16 6 6.5634 -8.7604 -2.2135 17 1 6.5386 -8.5110 -3.2640 18 6 7.1466 -9.9488 -1.7959 19 7 7.1773 -10.2525 -0.5157 20 14 7.8877 -11.1171 -3.0510 21 1 8.9736 -10.4251 -3.7907 22 1 8.4420 -12.3056 -2.3542 23 1 6.8360 -11.5497 -4.0060 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 2.4038 -1.0153 4.3295 32 1 3.5273 -3.0032 2.9124 33 1 3.8420 -4.2121 1.0764 34 1 3.4122 -4.7918 -1.6541 35 1 4.9815 -3.9670 -1.4961 36 1 5.7069 -5.6658 0.1586 37 1 4.1372 -6.4901 0.0003 38 1 4.5794 -6.8672 -2.4107 39 1 6.1489 -6.0428 -2.2517 40 1 6.0433 -8.1276 -0.3498 41 1 7.5851 -11.0828 -0.2238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158849907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:33 Heat of formation + Delta-G solvation = 17.896241 kcal Electronic energy + Delta-G solvation = -21091.343871 eV Core-core repulsion = 17814.056931 eV Total energy + Delta-G solvation = -3277.286941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -43.56953 -40.53771 -37.57033 -36.76801 -35.88824 -33.86009 -32.26850 -31.31993 -30.85925 -28.31189 -27.15233 -25.08996 -24.00618 -23.60350 -22.62100 -21.85467 -20.64141 -19.25369 -18.72216 -17.37988 -17.17494 -16.87179 -16.56407 -16.40012 -15.79636 -15.53501 -15.41231 -15.27598 -14.90393 -14.76833 -14.07543 -14.01884 -13.85352 -13.30879 -13.19216 -13.12977 -12.78436 -12.62926 -12.46938 -12.43940 -12.31293 -12.07743 -12.05422 -11.80644 -11.77602 -11.05442 -10.92680 -10.42045 -10.09093 -9.98070 -9.00868 -7.95747 -5.24756 0.19659 1.33149 1.48607 1.51391 1.57551 1.66359 2.10455 2.13052 2.57060 3.38177 3.47169 3.50886 3.75288 3.85530 3.97527 4.09267 4.14402 4.17202 4.28816 4.44657 4.56590 4.59014 4.60729 4.70485 4.72232 4.73377 4.82943 4.87150 4.89119 5.10294 5.12416 5.24205 5.32816 5.34740 5.49675 5.58121 5.78790 6.26937 6.34562 6.97869 7.10477 7.33623 8.08833 8.32140 9.27607 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039896 B = 0.002501 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.659834 B =11192.433796 C =11687.622233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.117 3.883 3 C -0.150 4.150 4 N -0.258 5.258 5 N -0.292 5.292 6 C -0.010 4.010 7 C -0.177 4.177 8 C -0.066 4.066 9 C 0.589 3.411 10 O -0.574 6.574 11 N -0.698 5.698 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.152 3.848 15 N -0.747 5.747 16 C -0.250 4.250 17 H 0.075 0.925 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.278 1.278 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.216 0.784 32 H 0.189 0.811 33 H 0.418 0.582 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.376 0.624 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.330 22.422 6.477 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 C -0.208 4.208 4 N -0.047 5.047 5 N -0.125 5.125 6 C -0.185 4.185 7 C -0.206 4.206 8 C -0.194 4.194 9 C 0.376 3.624 10 O -0.455 6.455 11 N -0.349 5.349 12 C 0.012 3.988 13 C -0.158 4.158 14 C 0.025 3.975 15 N -0.390 5.390 16 C -0.382 4.382 17 H 0.093 0.907 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.204 1.204 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.233 0.767 32 H 0.206 0.794 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.208 0.792 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.073 23.734 5.291 27.608 hybrid contribution 1.044 -1.887 0.221 2.168 sum -12.029 21.847 5.511 25.541 Atomic orbital electron populations 1.22087 0.91744 1.02574 1.04533 1.22233 0.96930 0.95208 0.83899 1.22048 1.01107 0.93030 1.04570 1.46193 1.37056 1.15451 1.05976 1.73109 1.22504 1.26736 0.90103 1.24176 1.00310 0.92764 1.01254 1.22703 1.05080 1.03142 0.89698 1.21483 1.07902 0.93859 0.96142 1.17110 0.77374 0.81236 0.86719 1.90708 1.57207 1.71135 1.26411 1.45571 1.58197 1.19141 1.12016 1.21192 0.98487 0.91742 0.87425 1.21713 1.00946 0.94661 0.98456 1.20674 0.95005 0.86435 0.95371 1.42537 1.69869 1.20042 1.06587 1.19608 1.29139 0.99060 0.90367 0.90705 1.25576 1.02940 1.00241 0.97964 1.69790 1.51538 1.25709 1.14875 0.85208 0.78371 0.78115 0.78045 1.20368 1.22015 1.20400 0.88028 0.93269 0.91314 0.86241 0.93169 0.88077 0.91157 0.76711 0.79390 0.74456 0.91357 0.91242 0.90477 0.90617 0.95937 0.95872 0.79199 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.45 71.98 0.68 -1.71 16 2 C 0.12 2.29 3.55 44.99 0.16 2.45 16 3 C -0.15 -2.33 9.30 71.98 0.67 -1.66 16 4 N -0.26 -5.77 3.09 -314.29 -0.97 -6.74 16 5 N -0.29 -6.24 11.52 -57.14 -0.66 -6.90 16 6 C -0.01 -0.17 12.03 85.18 1.02 0.86 16 7 C -0.18 -2.98 10.50 22.66 0.24 -2.74 16 8 C -0.07 -1.47 6.96 40.79 0.28 -1.19 16 9 C 0.59 14.77 7.79 86.59 0.67 15.45 16 10 O -0.57 -17.64 14.39 -4.12 -0.06 -17.69 16 11 N -0.70 -14.77 5.53 -466.63 -2.58 -17.35 16 12 C 0.14 3.31 5.68 86.38 0.49 3.80 16 13 C -0.12 -3.32 5.44 30.59 0.17 -3.15 16 14 C 0.15 5.77 6.26 86.38 0.54 6.31 16 15 N -0.75 -37.31 5.60 -343.48 -1.92 -39.23 16 16 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 17 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 20 Si 0.97 45.77 29.55 68.60 2.03 47.79 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.12 2.77 5.32 -2.39 -0.01 2.76 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 1.09 8.09 -2.39 -0.02 1.08 16 31 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.19 1.92 7.62 -2.91 -0.02 1.90 16 33 H 0.42 6.58 7.55 -92.71 -0.70 5.88 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.38 19.63 7.67 -92.70 -0.71 18.92 16 41 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -71.06 346.55 1.97 -69.08 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.37 Total: 27.87 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.23 Total: 1.52 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -5.85 Total: -128.57 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.06 Total: -17.69 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.06 1.97 -69.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158849907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.978 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds