Wall clock time and date at job start Tue Mar 31 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.34671 * 126.58981 * 274.68780 * 3 2 1 5 5 N 1.34124 * 108.02011 * 179.87357 * 4 3 2 6 6 C 1.30503 * 109.25491 * 0.39982 * 5 4 3 7 7 C 1.50703 * 125.65011 * 179.77295 * 6 5 4 8 8 C 1.50706 * 109.47236 * 304.97899 * 7 6 5 9 9 O 1.21276 * 119.99607 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00107 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00047 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46919 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.46986 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47459 * 179.97438 * 13 12 11 15 15 C 1.36933 * 120.00172 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00199 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99897 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99956 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99971 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47135 * 90.00042 * 19 17 15 21 21 H 1.48499 * 109.46900 * 210.00111 * 19 17 15 22 22 H 1.48501 * 109.47152 * 329.99746 * 19 17 15 23 23 N 1.35045 * 108.70028 * 359.75492 * 6 5 4 24 24 H 0.96993 * 126.39801 * 180.02562 * 23 6 5 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.07998 * 125.98968 * 0.02752 * 4 3 2 31 31 H 1.08997 * 109.46927 * 64.97537 * 7 6 5 32 32 H 1.08998 * 109.46965 * 184.97682 * 7 6 5 33 33 H 0.97002 * 119.99827 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.46926 * 299.99406 * 11 10 8 35 35 H 1.08997 * 109.46841 * 59.99555 * 11 10 8 36 36 H 1.09005 * 109.47227 * 299.99805 * 12 11 10 37 37 H 1.09001 * 109.47469 * 59.99452 * 12 11 10 38 38 H 1.09005 * 109.47085 * 300.00023 * 13 12 11 39 39 H 1.09001 * 109.47356 * 59.99515 * 13 12 11 40 40 H 0.97002 * 119.99666 * 359.97438 * 14 13 12 41 41 H 0.97000 * 119.99867 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2165 2.2072 -1.0777 5 7 2.6706 3.3952 -0.6518 6 6 2.7828 3.3721 0.6482 7 6 3.2652 4.5115 1.5086 8 6 4.6203 4.9642 1.0291 9 8 5.1430 4.4154 0.0824 10 7 5.2517 5.9783 1.6531 11 6 6.5693 6.4181 1.1874 12 6 7.0589 7.5749 2.0608 13 6 8.4352 8.0337 1.5749 14 7 8.9038 9.1418 2.4107 15 6 10.1204 9.7194 2.1629 16 1 10.7346 9.3578 1.3516 17 6 10.5647 10.7690 2.9553 18 7 11.7343 11.3239 2.7175 19 14 9.5032 11.3931 4.3601 20 1 9.8329 10.6450 5.5997 21 1 9.7623 12.8399 4.5713 22 1 8.0706 11.1905 4.0258 23 7 2.3946 2.1582 1.0948 24 1 2.3756 1.8639 2.0188 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0290 1.9305 -2.1047 31 1 2.5606 5.3405 1.4421 32 1 3.3385 4.1791 2.5441 33 1 4.8337 6.4170 2.4106 34 1 7.2735 5.5888 1.2539 35 1 6.4962 6.7506 0.1519 36 1 6.3545 8.4041 1.9939 37 1 7.1317 7.2428 3.0964 38 1 9.1393 7.2043 1.6421 39 1 8.3627 8.3657 0.5392 40 1 8.3523 9.4664 3.1397 41 1 12.0445 12.0576 3.2710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160242895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:21 Heat of formation + Delta-G solvation = 18.863641 kcal Electronic energy + Delta-G solvation = -20446.780631 eV Core-core repulsion = 17169.535640 eV Total energy + Delta-G solvation = -3277.244991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.39199 -39.59989 -36.17962 -34.60279 -34.41000 -32.78057 -32.18508 -31.47336 -29.91220 -27.45393 -25.29338 -23.73362 -22.38456 -21.42699 -21.27432 -21.07356 -20.07442 -17.74767 -17.63004 -17.03642 -16.00081 -15.89622 -15.30626 -14.97841 -14.85064 -14.48610 -14.27761 -13.95286 -13.86380 -13.39907 -13.25748 -12.90881 -12.80038 -12.73649 -12.23079 -12.02644 -11.99691 -11.65494 -11.18524 -11.03430 -10.83168 -10.70348 -10.21047 -10.17428 -10.06538 -9.89727 -9.59530 -9.08524 -8.90466 -8.47851 -7.24458 -5.76896 -3.12960 1.69684 2.55444 2.62291 2.90905 3.29305 3.35825 3.37864 3.44045 4.00689 4.38114 4.50618 4.58204 4.59403 4.71109 4.82305 4.96867 4.97857 5.10628 5.15688 5.22220 5.30381 5.38757 5.51087 5.51473 5.53843 5.69500 5.80504 5.93862 5.98316 5.99535 6.15456 6.39910 6.52637 6.69592 6.72612 7.05182 7.41656 7.91263 7.99517 8.17076 8.41914 9.20727 9.92729 10.12303 11.41489 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.060496 B = 0.002148 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.726357 B =13035.237789 C =13292.851652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.025 4.025 4 C -0.020 4.020 5 N -0.457 5.457 6 C 0.218 3.782 7 C -0.055 4.055 8 C 0.514 3.486 9 O -0.514 6.514 10 N -0.731 5.731 11 C 0.124 3.876 12 C -0.141 4.141 13 C 0.160 3.840 14 N -0.757 5.757 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.887 3.113 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 N -0.563 5.563 24 H 0.415 0.585 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.360 0.640 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.014 -22.214 0.074 34.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.169 4.169 5 N -0.175 5.175 6 C -0.046 4.046 7 C -0.096 4.096 8 C 0.297 3.703 9 O -0.388 6.388 10 N -0.383 5.383 11 C 0.001 3.999 12 C -0.179 4.179 13 C 0.032 3.968 14 N -0.402 5.402 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.193 4.193 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 N -0.167 5.167 24 H 0.252 0.748 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.185 0.815 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.198 -21.885 -1.313 33.401 hybrid contribution -1.005 -0.006 2.422 2.622 sum -26.204 -21.891 1.108 34.162 Atomic orbital electron populations 1.21777 0.94429 1.01907 1.02412 1.19984 0.96001 0.89092 1.03457 1.21230 1.09080 0.96394 0.87277 1.22124 1.05740 0.90416 0.98633 1.70247 1.16373 1.23083 1.07780 1.22212 1.04402 0.86843 0.91170 1.19927 0.96152 0.95525 0.98033 1.20071 0.86476 0.80291 0.83444 1.90789 1.66546 1.54852 1.26576 1.45997 1.20885 1.36123 1.35337 1.21324 0.82767 0.97071 0.98786 1.21988 0.99117 0.97178 0.99636 1.20506 0.91094 0.90732 0.94485 1.42682 1.21080 1.39303 1.37176 1.19083 0.93094 1.11887 1.13488 0.89134 1.24693 0.96776 0.98549 0.99248 1.69705 1.19488 1.27293 1.41683 0.86509 0.80170 0.78307 0.83292 1.21109 1.21703 1.20393 1.43066 1.51592 1.12428 1.09616 0.74752 0.92042 0.92955 0.91997 0.91326 0.89372 0.81495 0.86264 0.87591 0.76690 0.91284 0.91097 0.91308 0.91409 0.95179 0.95158 0.80713 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.05 -0.24 6.49 -27.88 -0.18 -0.42 16 3 C -0.02 -0.21 6.49 -81.60 -0.53 -0.74 16 4 C -0.02 -0.23 11.79 -17.81 -0.21 -0.44 16 5 N -0.46 -6.33 10.58 -10.81 -0.11 -6.44 16 6 C 0.22 2.34 6.96 -155.41 -1.08 1.26 16 7 C -0.05 -0.43 6.33 -29.03 -0.18 -0.61 16 8 C 0.51 6.15 7.82 -10.99 -0.09 6.06 16 9 O -0.51 -8.78 15.55 5.56 0.09 -8.70 16 10 N -0.73 -7.55 5.56 -60.29 -0.33 -7.89 16 11 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 12 C -0.14 -1.96 5.44 -26.73 -0.15 -2.11 16 13 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 14 N -0.76 -18.02 5.41 -59.91 -0.32 -18.34 16 15 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 16 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 19 Si 0.89 22.00 27.74 -169.99 -4.71 17.29 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 23 N -0.56 -4.48 6.15 -6.54 -0.04 -4.52 16 24 H 0.42 1.84 8.96 -40.82 -0.37 1.48 16 25 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 2.83 8.47 -40.82 -0.35 2.49 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.36 8.22 5.53 -40.82 -0.23 8.00 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 348.05 15.07 5.24 5.24 Total: -1.00 -38.46 348.05 -8.22 -46.69 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.45 Total: 5.38 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.35 Total: 0.08 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.04 Total: -65.98 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.46 -8.22 -46.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160242895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.549 kcal (2) G-P(sol) polarization free energy of solvation -38.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds