Wall clock time and date at job start Tue Mar 31 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46839 * 2 1 4 4 C 1.53008 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46820 * 179.97438 * 4 3 2 6 6 C 1.37095 * 120.00096 * 269.99818 * 5 4 3 7 7 H 1.07998 * 119.99866 * 143.16409 * 6 5 4 8 8 C 1.38954 * 120.00003 * 323.16017 * 6 5 4 9 9 N 1.31405 * 119.99903 * 158.35983 * 8 6 5 10 10 Si 1.86802 * 120.00076 * 338.36197 * 8 6 5 11 11 H 1.48493 * 109.47198 * 95.26847 * 10 8 6 12 12 H 1.48499 * 109.46894 * 215.27220 * 10 8 6 13 13 H 1.48500 * 109.46742 * 335.27082 * 10 8 6 14 14 C 1.34775 * 119.99979 * 90.00441 * 5 4 3 15 15 O 1.21297 * 119.99784 * 354.76490 * 14 5 4 16 16 C 1.50698 * 120.00364 * 174.77103 * 14 5 4 17 17 H 1.09004 * 109.46662 * 327.13831 * 16 14 5 18 18 N 1.46897 * 109.47352 * 207.13809 * 16 14 5 19 19 C 1.53003 * 109.47154 * 87.13133 * 16 14 5 20 20 C 1.50701 * 109.47187 * 185.69567 * 19 16 14 21 21 C 1.34666 * 126.58737 * 85.88237 * 20 19 16 22 22 N 1.34126 * 108.02330 * 179.97438 * 21 20 19 23 23 C 1.30505 * 109.25140 * 0.02562 * 22 21 20 24 24 N 1.35038 * 108.69837 * 359.76436 * 23 22 21 25 25 H 0.97005 * 126.39551 * 180.26773 * 24 23 22 26 26 H 1.08997 * 109.47189 * 299.99779 * 1 2 3 27 27 H 1.09000 * 109.46987 * 60.00643 * 1 2 3 28 28 H 1.09007 * 109.46719 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47676 * 240.00056 * 2 1 3 30 30 H 1.09001 * 109.47563 * 119.99852 * 2 1 3 31 31 H 1.08997 * 109.47564 * 60.00017 * 3 2 1 32 32 H 1.09001 * 109.47498 * 299.99745 * 3 2 1 33 33 H 1.08997 * 109.47114 * 60.00113 * 4 3 2 34 34 H 1.08995 * 109.46969 * 299.99861 * 4 3 2 35 35 H 0.97001 * 119.99893 * 185.01570 * 9 8 6 36 36 H 1.00904 * 110.99441 * 299.99602 * 18 16 14 37 37 H 1.00897 * 111.00202 * 63.95092 * 18 16 14 38 38 H 1.08999 * 109.47385 * 305.69835 * 19 16 14 39 39 H 1.09004 * 109.46985 * 65.70219 * 19 16 14 40 40 H 1.08001 * 125.99294 * 359.97141 * 21 20 19 41 41 H 1.07998 * 125.64748 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.2861 3.4698 -1.1888 7 1 4.0634 4.5225 -1.2824 8 6 4.8038 2.7702 -2.2720 9 7 4.6348 3.2289 -3.4918 10 14 5.7399 1.1777 -1.9943 11 1 4.8158 0.0262 -2.1526 12 1 6.8393 1.0703 -2.9868 13 1 6.3089 1.1709 -0.6226 14 6 4.2833 3.4596 1.1656 15 8 3.9926 2.9235 2.2142 16 6 4.8961 4.8363 1.1678 17 1 5.5889 4.9269 0.3311 18 7 5.6201 5.0482 2.4283 19 6 3.7916 5.8864 1.0312 20 6 4.4119 7.2528 0.8928 21 6 4.8335 7.8311 -0.2480 22 7 5.3203 9.0432 0.0565 23 6 5.2169 9.2378 1.3428 24 7 4.6506 8.1466 1.9015 25 1 4.4515 8.0194 2.8423 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9287 0.8891 35 1 4.9319 2.7052 -4.2524 36 1 4.9990 4.9692 3.2196 37 1 6.3955 4.4080 2.5119 38 1 3.1907 5.6689 0.1482 39 1 3.1571 5.8636 1.9172 40 1 4.7877 7.3952 -1.2351 41 1 5.5283 10.1262 1.8720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160729488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:43 Heat of formation + Delta-G solvation = -5.101787 kcal Electronic energy + Delta-G solvation = -22638.079007 eV Core-core repulsion = 19359.794797 eV Total energy + Delta-G solvation = -3278.284210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 5.09 seconds Orbital eigenvalues (eV) -42.81571 -40.96255 -37.61431 -36.12366 -35.51486 -33.85751 -33.23350 -31.80980 -30.34219 -28.19083 -26.87028 -25.51090 -23.66508 -22.31017 -22.14767 -21.55653 -20.74397 -19.02101 -18.64919 -18.13875 -17.37000 -16.68048 -16.26036 -16.08822 -15.80848 -15.54849 -15.28991 -14.81772 -14.67068 -14.51373 -14.36633 -14.20061 -13.94401 -13.54892 -13.35359 -13.19444 -12.93181 -12.82618 -12.37957 -12.17896 -12.09011 -11.95225 -11.78523 -11.48700 -11.17834 -10.90215 -10.79359 -10.76391 -9.78835 -9.66462 -9.15789 -8.49550 -6.11959 1.13641 1.23522 1.30345 1.37142 1.80779 2.12869 2.32978 2.41525 2.62167 2.97822 3.55894 3.86053 3.93175 4.01574 4.08227 4.16724 4.23130 4.24502 4.30812 4.39911 4.54803 4.65273 4.74670 4.80477 4.86493 4.87825 4.90688 4.94935 5.03226 5.21439 5.32708 5.38781 5.44502 5.47392 5.88578 5.99100 6.10942 6.25281 6.47150 6.74785 6.93688 7.26525 7.38126 7.73666 8.61221 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.005684 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.713948 B = 4925.164395 C = 5645.521415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.114 4.114 4 C 0.094 3.906 5 N -0.463 5.463 6 C -0.343 4.343 7 H 0.095 0.905 8 C 0.036 3.964 9 N -0.887 5.887 10 Si 0.922 3.078 11 H -0.259 1.259 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.440 3.560 15 O -0.620 6.620 16 C 0.105 3.895 17 H 0.090 0.910 18 N -0.808 5.808 19 C -0.017 4.017 20 C 0.014 3.986 21 C -0.058 4.058 22 N -0.538 5.538 23 C 0.186 3.814 24 N -0.544 5.544 25 H 0.432 0.568 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.280 0.720 36 H 0.345 0.655 37 H 0.342 0.658 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 1.785 10.024 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.029 4.029 5 N -0.182 5.182 6 C -0.470 4.470 7 H 0.113 0.887 8 C -0.170 4.170 9 N -0.523 5.523 10 Si 0.749 3.251 11 H -0.185 1.185 12 H -0.215 1.215 13 H -0.196 1.196 14 C 0.228 3.772 15 O -0.507 6.507 16 C -0.011 4.011 17 H 0.108 0.892 18 N -0.336 5.336 19 C -0.056 4.056 20 C -0.103 4.103 21 C -0.204 4.204 22 N -0.258 5.258 23 C -0.098 4.098 24 N -0.148 5.148 25 H 0.273 0.727 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.168 0.832 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.486 2.837 9.410 10.138 hybrid contribution -0.053 -2.419 0.537 2.478 sum -2.539 0.419 9.948 10.275 Atomic orbital electron populations 1.21709 0.94157 1.02417 1.01862 1.21486 0.97377 0.95070 1.01998 1.21720 0.94039 0.98118 1.01392 1.21772 0.95941 0.84824 1.00319 1.43990 1.56280 1.12223 1.05687 1.19023 1.43542 0.97133 0.87304 0.88728 1.25817 0.95940 1.00535 0.94689 1.69749 1.43816 1.39950 0.98761 0.86219 0.79394 0.81258 0.78223 1.18472 1.21452 1.19627 1.22154 0.81178 0.90898 0.82954 1.90516 1.57826 1.70223 1.32121 1.21132 0.96113 0.88995 0.94834 0.89194 1.59237 1.13160 1.58233 1.03014 1.19745 0.95417 0.87135 1.03338 1.20726 1.07121 0.93740 0.88761 1.22060 1.06409 0.93319 0.98657 1.70192 1.22670 1.18067 1.14823 1.25648 1.00454 0.93938 0.89734 1.43045 1.47119 1.13859 1.10742 0.72738 0.92623 0.92898 0.91054 0.92214 0.91532 0.92769 0.92621 0.92480 0.91833 0.90969 0.84200 0.84596 0.89951 0.90101 0.83216 0.73690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.57 5.93 30.59 0.18 -3.38 16 3 C -0.11 -4.22 5.54 30.60 0.17 -4.05 16 4 C 0.09 3.97 4.17 86.38 0.36 4.33 16 5 N -0.46 -20.88 2.19 -635.53 -1.39 -22.28 16 6 C -0.34 -16.88 8.52 84.04 0.72 -16.17 16 7 H 0.10 4.89 6.25 -2.91 -0.02 4.88 16 8 C 0.04 1.83 5.32 84.93 0.45 2.28 16 9 N -0.89 -47.56 13.95 21.66 0.30 -47.26 16 10 Si 0.92 40.81 24.97 68.60 1.71 42.52 16 11 H -0.26 -10.73 6.67 99.48 0.66 -10.06 16 12 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.44 18.65 6.81 87.66 0.60 19.24 16 15 O -0.62 -27.80 15.95 -3.08 -0.05 -27.85 16 16 C 0.10 3.79 2.34 44.17 0.10 3.89 16 17 H 0.09 3.73 7.17 -2.38 -0.02 3.71 16 18 N -0.81 -24.24 8.79 -171.80 -1.51 -25.75 16 19 C -0.02 -0.54 5.22 29.85 0.16 -0.39 16 20 C 0.01 0.43 6.24 40.95 0.26 0.68 16 21 C -0.06 -2.08 11.79 83.52 0.98 -1.09 16 22 N -0.54 -18.10 11.25 -200.32 -2.25 -20.35 16 23 C 0.19 4.45 13.04 180.26 2.35 6.80 16 24 N -0.54 -12.56 6.15 -186.50 -1.15 -13.70 16 25 H 0.43 7.02 8.96 -92.70 -0.83 6.19 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.46 3.11 -2.39 -0.01 2.46 16 34 H 0.06 2.66 7.50 -2.39 -0.02 2.65 16 35 H 0.28 14.11 8.32 -92.71 -0.77 13.34 16 36 H 0.34 9.69 8.55 -89.69 -0.77 8.92 16 37 H 0.34 10.28 9.06 -89.70 -0.81 9.47 16 38 H 0.08 3.00 6.89 -2.39 -0.02 2.98 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.15 5.79 8.06 -2.91 -0.02 5.77 16 41 H 0.25 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -62.55 336.05 1.32 -61.23 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -1.38 Total: 44.07 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 7.04 Total: 9.37 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -6.00 Total: -129.34 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.05 Total: -27.85 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.71 Total: 42.52 kcal Total: -62.55 1.32 -61.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160729488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.124 kcal (2) G-P(sol) polarization free energy of solvation -62.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.09 seconds