Wall clock time and date at job start Tue Mar 31 2020 02:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47075 * 2 1 4 4 C 1.53005 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47016 * 179.97438 * 4 3 2 6 6 C 1.37102 * 120.00115 * 264.53995 * 5 4 3 7 7 H 1.07997 * 120.00112 * 145.49193 * 6 5 4 8 8 C 1.38951 * 119.99892 * 325.49819 * 6 5 4 9 9 N 1.31416 * 120.00023 * 338.27984 * 8 6 5 10 10 Si 1.86795 * 120.00153 * 158.28619 * 8 6 5 11 11 H 1.48507 * 109.46999 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47241 * 119.99713 * 10 8 6 13 13 H 1.48498 * 109.47427 * 239.99999 * 10 8 6 14 14 C 1.34775 * 120.00294 * 84.54558 * 5 4 3 15 15 O 1.21296 * 119.99834 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00423 * 179.97438 * 14 5 4 17 17 H 1.08999 * 109.47265 * 40.00047 * 16 14 5 18 18 N 1.46905 * 109.47484 * 159.99503 * 16 14 5 19 19 C 1.52995 * 109.47307 * 279.99691 * 16 14 5 20 20 C 1.50698 * 109.47647 * 174.99893 * 19 16 14 21 21 C 1.34665 * 126.59300 * 84.96937 * 20 19 16 22 22 N 1.34129 * 108.02352 * 180.02562 * 21 20 19 23 23 C 1.30492 * 109.25344 * 0.02562 * 22 21 20 24 24 N 1.35042 * 108.70426 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.39842 * 180.02562 * 24 23 22 26 26 H 1.08993 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46978 * 299.99911 * 1 2 3 28 28 H 1.08997 * 109.46930 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.46978 * 240.00088 * 2 1 3 30 30 H 1.08997 * 109.46930 * 119.99958 * 2 1 3 31 31 H 1.08996 * 109.47597 * 59.99929 * 3 2 1 32 32 H 1.08997 * 109.47207 * 299.99788 * 3 2 1 33 33 H 1.08998 * 109.46978 * 60.00088 * 4 3 2 34 34 H 1.08997 * 109.46930 * 299.99958 * 4 3 2 35 35 H 0.97000 * 120.00337 * 179.97438 * 9 8 6 36 36 H 1.00902 * 110.99958 * 296.05165 * 18 16 14 37 37 H 1.00903 * 110.99414 * 59.99970 * 18 16 14 38 38 H 1.09002 * 109.47237 * 54.99972 * 19 16 14 39 39 H 1.08998 * 109.47110 * 295.00088 * 19 16 14 40 40 H 1.08003 * 125.99034 * 0.03166 * 21 20 19 41 41 H 1.08004 * 125.64808 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3939 3.4317 -1.1821 7 1 4.2165 4.4886 -1.3152 8 6 4.9620 2.6879 -2.2091 9 7 5.5654 1.5515 -1.9414 10 14 4.8684 3.3032 -3.9703 11 1 4.1414 4.5978 -4.0043 12 1 6.2418 3.4922 -4.5024 13 1 4.1468 2.3089 -4.8045 14 6 4.1779 3.4968 1.1615 15 8 3.8808 2.9590 2.2074 16 6 4.6808 4.9173 1.1610 17 1 4.2532 5.4538 0.3139 18 7 4.2821 5.5784 2.4108 19 6 6.2065 4.9182 1.0478 20 6 6.7003 6.3366 0.9236 21 6 6.9535 7.1899 1.9342 22 7 7.3734 8.3482 1.4040 23 6 7.3895 8.2453 0.1033 24 7 6.9767 7.0057 -0.2382 25 1 6.8920 6.6548 -1.1386 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 5.9617 1.0321 -2.6583 36 1 3.2778 5.6481 2.4787 37 1 4.6663 5.0995 3.2116 38 1 6.5058 4.3509 0.1664 39 1 6.6372 4.4603 1.9382 40 1 6.8387 6.9785 2.9871 41 1 7.6849 9.0225 -0.5860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160729489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:04 Heat of formation + Delta-G solvation = 6.079779 kcal Electronic energy + Delta-G solvation = -22614.957850 eV Core-core repulsion = 19337.158509 eV Total energy + Delta-G solvation = -3277.799341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58924 -38.99823 -35.79275 -34.40920 -33.99837 -32.06220 -31.66225 -30.24215 -28.74826 -26.78301 -25.08597 -23.89840 -21.91239 -21.01425 -20.51293 -20.24574 -19.18068 -17.50709 -16.99904 -16.29047 -15.30968 -14.92429 -14.75899 -14.60691 -14.33491 -14.01541 -13.81350 -13.39961 -13.00617 -12.95706 -12.89698 -12.33944 -12.19354 -12.07575 -11.56243 -11.47107 -11.37386 -11.06953 -10.86696 -10.66858 -10.59690 -10.45291 -10.25913 -9.82879 -9.60953 -9.58447 -9.35946 -9.02752 -8.03317 -7.82931 -7.66788 -6.55262 -4.23140 2.48368 2.93636 3.08119 3.09440 3.50556 3.59246 3.76715 3.93558 4.62912 4.79464 5.03254 5.13531 5.40669 5.41885 5.50408 5.59040 5.61081 5.80803 5.90704 5.98502 6.07436 6.14936 6.18196 6.26694 6.31691 6.35604 6.48594 6.52615 6.64755 6.75302 6.80925 7.01673 7.19371 7.20286 7.34911 7.58042 7.75892 7.77343 7.94813 8.19207 8.45623 8.88972 9.34778 9.77956 10.44915 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.006004 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.251344 B = 4662.367808 C = 6018.081827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.112 3.888 5 N -0.430 5.430 6 C -0.342 4.342 7 H 0.089 0.911 8 C 0.046 3.954 9 N -0.852 5.852 10 Si 0.907 3.093 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.434 3.566 15 O -0.609 6.609 16 C 0.100 3.900 17 H 0.091 0.909 18 N -0.820 5.820 19 C -0.028 4.028 20 C 0.011 3.989 21 C -0.015 4.015 22 N -0.501 5.501 23 C 0.163 3.837 24 N -0.567 5.567 25 H 0.418 0.582 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.271 0.729 36 H 0.336 0.664 37 H 0.342 0.658 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 3.301 -1.135 3.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.012 4.012 5 N -0.147 5.147 6 C -0.470 4.470 7 H 0.106 0.894 8 C -0.161 4.161 9 N -0.488 5.488 10 Si 0.733 3.267 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.220 3.780 15 O -0.496 6.496 16 C -0.016 4.016 17 H 0.109 0.891 18 N -0.348 5.348 19 C -0.068 4.068 20 C -0.104 4.104 21 C -0.163 4.163 22 N -0.220 5.220 23 C -0.120 4.120 24 N -0.170 5.170 25 H 0.256 0.744 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.181 0.819 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.600 4.228 -0.536 4.304 hybrid contribution -0.845 -1.576 -1.858 2.578 sum -1.445 2.652 -2.393 3.853 Atomic orbital electron populations 1.21756 0.96605 1.00730 1.01466 1.21424 0.95008 0.97694 1.01589 1.21890 0.97910 0.95554 1.01212 1.21451 0.91086 0.85129 1.03509 1.43562 1.54160 1.11853 1.05084 1.19401 1.41244 0.95515 0.90844 0.89366 1.25301 0.94291 0.96314 1.00196 1.69937 1.30831 1.14777 1.33240 0.86202 0.78209 0.79398 0.82903 1.19155 1.20637 1.20311 1.21544 0.82259 0.90232 0.83916 1.90529 1.56505 1.70674 1.31854 1.21129 0.95230 0.91247 0.93980 0.89109 1.59272 1.15892 1.55652 1.03965 1.19879 0.93391 0.89295 1.04199 1.21188 1.06575 0.97034 0.85652 1.21899 1.05876 0.89475 0.99024 1.70203 1.20026 1.25377 1.06428 1.24730 1.05638 0.87858 0.93815 1.43302 1.51354 1.12946 1.09435 0.74409 0.93369 0.93088 0.93055 0.92272 0.92412 0.92965 0.92473 0.87583 0.93125 0.91898 0.85291 0.84569 0.88736 0.90165 0.81864 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.49 5.50 -26.73 -0.15 -2.64 16 4 C 0.11 2.53 4.89 -4.04 -0.02 2.52 16 5 N -0.43 -9.92 2.55 -114.81 -0.29 -10.21 16 6 C -0.34 -7.79 7.82 -14.93 -0.12 -7.90 16 7 H 0.09 1.94 6.47 -52.49 -0.34 1.60 16 8 C 0.05 1.04 4.93 -17.47 -0.09 0.96 16 9 N -0.85 -20.61 11.34 55.50 0.63 -19.98 16 10 Si 0.91 17.69 29.60 -169.99 -5.03 12.66 16 11 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 12 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.43 9.70 6.84 -10.99 -0.08 9.63 16 15 O -0.61 -14.96 15.92 5.54 0.09 -14.87 16 16 C 0.10 1.86 2.44 -68.87 -0.17 1.69 16 17 H 0.09 1.76 6.60 -51.93 -0.34 1.41 16 18 N -0.82 -13.81 8.46 -5.66 -0.05 -13.86 16 19 C -0.03 -0.49 5.33 -27.89 -0.15 -0.64 16 20 C 0.01 0.19 6.29 -81.60 -0.51 -0.33 16 21 C -0.02 -0.26 11.51 -17.81 -0.21 -0.46 16 22 N -0.50 -8.43 11.25 -14.67 -0.17 -8.60 16 23 C 0.16 2.25 13.04 -90.38 -1.18 1.07 16 24 N -0.57 -8.01 6.15 -10.30 -0.06 -8.07 16 25 H 0.42 5.04 8.96 -40.82 -0.37 4.67 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.11 2.54 5.37 -51.93 -0.28 2.26 16 34 H 0.05 1.21 7.59 -51.93 -0.39 0.82 16 35 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 36 H 0.34 5.52 9.06 -39.29 -0.36 5.17 16 37 H 0.34 5.76 8.58 -39.29 -0.34 5.42 16 38 H 0.09 1.82 7.27 -51.93 -0.38 1.45 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.16 2.59 8.06 -52.48 -0.42 2.16 16 41 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -27.88 340.52 -8.36 -36.23 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -6.16 Total: 21.46 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.45 Total: 0.10 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.06 Total: -60.72 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.09 Total: -14.87 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.88 -8.36 -36.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160729489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.314 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds