Wall clock time and date at job start Tue Mar 31 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 N 1.46503 * 109.46594 * 119.99604 * 2 1 3 5 5 C 1.35851 * 126.13641 * 299.97484 * 4 2 1 6 6 N 1.30166 * 109.00315 * 179.76767 * 5 4 2 7 7 C 1.35764 * 108.86976 * 0.41220 * 6 5 4 8 8 C 1.47322 * 126.23881 * 179.85754 * 7 6 5 9 9 O 1.21623 * 120.00050 * 179.68718 * 8 7 6 10 10 N 1.34777 * 119.99921 * 359.41345 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27801 * 10 8 7 12 12 C 1.52990 * 109.47304 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47532 * 179.97438 * 12 11 10 14 14 N 1.46492 * 109.47578 * 179.97438 * 13 12 11 15 15 C 1.36939 * 120.00203 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99738 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00187 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46912 * 59.99932 * 19 17 15 21 21 H 1.48496 * 109.46913 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46815 * 300.00109 * 19 17 15 23 23 C 1.35376 * 126.13648 * 120.00532 * 4 2 1 24 24 H 1.08997 * 109.47979 * 300.00545 * 1 2 3 25 25 H 1.09003 * 109.46630 * 60.00443 * 1 2 3 26 26 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47523 * 239.99179 * 2 1 3 28 28 H 1.09003 * 109.46979 * 299.99343 * 3 2 1 29 29 H 1.09000 * 109.47308 * 59.99671 * 3 2 1 30 30 H 1.08994 * 109.47346 * 179.97438 * 3 2 1 31 31 H 1.08002 * 125.49397 * 0.02817 * 5 4 2 32 32 H 0.97000 * 119.99736 * 0.27073 * 10 8 7 33 33 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 34 34 H 1.08997 * 109.47029 * 59.99499 * 11 10 8 35 35 H 1.09006 * 109.47037 * 299.99466 * 12 11 10 36 36 H 1.09002 * 109.47663 * 59.99467 * 12 11 10 37 37 H 1.08998 * 109.46729 * 300.00089 * 13 12 11 38 38 H 1.09002 * 109.47033 * 59.99141 * 13 12 11 39 39 H 0.97003 * 120.00350 * 359.97438 * 14 13 12 40 40 H 0.96998 * 120.00171 * 180.02562 * 18 17 15 41 41 H 1.08001 * 126.56093 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7684 -0.3364 2.4838 6 7 2.3594 -1.1814 3.2781 7 6 3.0172 -2.1025 2.5284 8 6 3.8150 -3.2313 3.0381 9 8 4.3542 -3.9950 2.2602 10 7 3.9518 -3.4143 4.3663 11 6 4.7502 -4.5332 4.8732 12 6 4.7439 -4.5124 6.4029 13 6 5.5772 -5.6814 6.9324 14 7 5.5717 -5.6612 8.3971 15 6 6.2561 -6.6182 9.0977 16 1 6.7997 -7.3881 8.5703 17 6 6.2505 -6.5994 10.4857 18 7 5.5877 -5.6614 11.1284 19 14 7.1836 -7.9053 11.4414 20 1 8.6245 -7.8426 11.0876 21 1 7.0210 -7.6639 12.8975 22 1 6.6476 -9.2471 11.0985 23 6 2.7997 -1.7957 1.2170 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.1717 0.5074 2.7976 32 1 3.5218 -2.8051 4.9867 33 1 4.3243 -5.4725 4.5204 34 1 5.7748 -4.4409 4.5131 35 1 5.1701 -3.5731 6.7553 36 1 3.7193 -4.6044 6.7635 37 1 5.1506 -6.6205 6.5800 38 1 6.6018 -5.5898 6.5719 39 1 5.0838 -4.9694 8.8709 40 1 5.5840 -5.6480 12.0983 41 1 3.1786 -2.3320 0.3595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163267623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:03 Heat of formation + Delta-G solvation = 21.938992 kcal Electronic energy + Delta-G solvation = -20581.669071 eV Core-core repulsion = 17304.557437 eV Total energy + Delta-G solvation = -3277.111634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52281 -39.20777 -36.49764 -35.87279 -34.20506 -32.00020 -31.42241 -30.08957 -29.15677 -28.01796 -25.46970 -23.60252 -23.37329 -22.03837 -21.06164 -20.82129 -19.70165 -17.89301 -17.02708 -16.45230 -15.97965 -15.92113 -15.33672 -15.08700 -14.61368 -14.31689 -14.19947 -14.18496 -13.66460 -13.50490 -13.18953 -12.97749 -12.96365 -12.78056 -12.31364 -12.07788 -11.91691 -11.53714 -10.85372 -10.83887 -10.73380 -10.50582 -10.49843 -10.10392 -10.09644 -9.90587 -9.63392 -9.00732 -8.81074 -8.71567 -6.86355 -5.70600 -2.99269 1.41958 2.21093 2.22994 3.38847 3.49269 3.52918 3.54553 3.56388 3.86934 4.18273 4.20390 4.29201 4.39976 4.65134 4.80861 4.89470 4.97832 4.99427 5.06200 5.20720 5.30340 5.35354 5.42988 5.44451 5.64204 5.76898 5.78247 6.09411 6.19276 6.20715 6.30427 6.42688 6.62840 6.72280 6.89499 6.93611 7.46274 7.75622 7.79154 8.36814 8.48520 9.59253 10.17515 10.52320 11.52418 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.050665 B = 0.002204 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.519679 B =12701.135465 C =13051.969191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.453 5.453 5 C 0.186 3.814 6 N -0.461 5.461 7 C -0.060 4.060 8 C 0.600 3.400 9 O -0.551 6.551 10 N -0.712 5.712 11 C 0.123 3.877 12 C -0.138 4.138 13 C 0.157 3.843 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.032 3.968 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.207 0.793 32 H 0.409 0.591 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 16.716 -26.153 33.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.097 4.097 6 N -0.180 5.180 7 C -0.190 4.190 8 C 0.386 3.614 9 O -0.429 6.429 10 N -0.362 5.362 11 C -0.001 4.001 12 C -0.176 4.176 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.212 4.212 18 N -0.584 5.584 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.106 4.106 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.224 0.776 32 H 0.244 0.756 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.503 16.080 -25.872 32.562 hybrid contribution 0.071 -0.091 0.198 0.230 sum -11.432 15.989 -25.674 32.334 Atomic orbital electron populations 1.22194 0.92781 1.03561 1.03680 1.21582 0.95798 0.94231 0.86161 1.22194 1.02430 0.93914 1.03681 1.45662 1.37756 1.21911 1.08264 1.25011 1.04024 1.01989 0.78689 1.70641 1.10761 1.03985 1.32624 1.20624 1.07387 1.00413 0.90530 1.16899 0.79395 0.82643 0.82469 1.90788 1.49061 1.46274 1.56777 1.45865 1.52359 1.31371 1.06649 1.21369 0.95499 0.88856 0.94333 1.21940 1.01912 1.00996 0.92736 1.20523 0.96191 0.94297 0.86144 1.42342 1.61721 1.34365 0.99376 1.19212 1.23659 1.05182 0.88962 0.91150 1.24758 1.01035 0.98966 0.96433 1.69653 1.46422 1.34984 1.07304 0.86234 0.79566 0.81200 0.78998 1.21271 1.21711 1.21265 1.22593 0.97618 0.90713 0.99721 0.91359 0.90180 0.91490 0.87832 0.90174 0.91363 0.91486 0.77617 0.75598 0.91322 0.91325 0.91243 0.91247 0.96050 0.96060 0.78267 0.93496 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.42 9.24 37.16 0.34 -0.07 16 2 C 0.12 0.44 3.57 -67.93 -0.24 0.20 16 3 C -0.16 -0.42 9.24 37.16 0.34 -0.07 16 4 N -0.45 -3.24 2.59 -111.25 -0.29 -3.52 16 5 C 0.19 1.55 11.53 -89.91 -1.04 0.51 16 6 N -0.46 -5.57 11.01 -11.03 -0.12 -5.69 16 7 C -0.06 -0.78 6.98 -83.09 -0.58 -1.36 16 8 C 0.60 9.29 7.81 -12.57 -0.10 9.19 16 9 O -0.55 -9.91 16.88 5.26 0.09 -9.82 16 10 N -0.71 -10.45 5.55 -61.42 -0.34 -10.79 16 11 C 0.12 1.90 5.67 -4.05 -0.02 1.88 16 12 C -0.14 -2.33 5.44 -26.73 -0.15 -2.47 16 13 C 0.16 3.30 6.26 -4.04 -0.03 3.28 16 14 N -0.73 -19.44 5.60 -59.91 -0.34 -19.77 16 15 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 16 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 18 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 19 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 C 0.03 0.32 11.22 -16.64 -0.19 0.13 16 24 H 0.07 0.17 7.94 -51.93 -0.41 -0.25 16 25 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.10 0.26 8.07 -51.93 -0.42 -0.16 16 28 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.07 0.17 7.94 -51.93 -0.41 -0.25 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.41 5.57 8.19 -40.82 -0.33 5.23 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.38 10.58 7.67 -40.82 -0.31 10.26 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.19 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -35.89 351.49 -8.41 -44.30 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.51 Total: 6.81 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.90 Total: 3.52 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.36 Total: -68.09 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.89 -8.41 -44.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163267623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.236 kcal (2) G-P(sol) polarization free energy of solvation -35.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds