Wall clock time and date at job start Tue Mar 31 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 N 1.46503 * 109.46594 * 119.99604 * 2 1 3 5 5 C 1.35851 * 126.13641 * 299.97484 * 4 2 1 6 6 N 1.30166 * 109.00315 * 179.76767 * 5 4 2 7 7 C 1.35764 * 108.86976 * 0.41220 * 6 5 4 8 8 C 1.47322 * 126.23881 * 179.85754 * 7 6 5 9 9 O 1.21623 * 120.00050 * 179.68718 * 8 7 6 10 10 N 1.34777 * 119.99921 * 359.41345 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27801 * 10 8 7 12 12 C 1.52990 * 109.47304 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47532 * 179.97438 * 12 11 10 14 14 N 1.46492 * 109.47578 * 179.97438 * 13 12 11 15 15 C 1.36939 * 120.00203 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99738 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00187 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46912 * 59.99932 * 19 17 15 21 21 H 1.48496 * 109.46913 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46815 * 300.00109 * 19 17 15 23 23 C 1.35376 * 126.13648 * 120.00532 * 4 2 1 24 24 H 1.08997 * 109.47979 * 300.00545 * 1 2 3 25 25 H 1.09003 * 109.46630 * 60.00443 * 1 2 3 26 26 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47523 * 239.99179 * 2 1 3 28 28 H 1.09003 * 109.46979 * 299.99343 * 3 2 1 29 29 H 1.09000 * 109.47308 * 59.99671 * 3 2 1 30 30 H 1.08994 * 109.47346 * 179.97438 * 3 2 1 31 31 H 1.08002 * 125.49397 * 0.02817 * 5 4 2 32 32 H 0.97000 * 119.99736 * 0.27073 * 10 8 7 33 33 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 34 34 H 1.08997 * 109.47029 * 59.99499 * 11 10 8 35 35 H 1.09006 * 109.47037 * 299.99466 * 12 11 10 36 36 H 1.09002 * 109.47663 * 59.99467 * 12 11 10 37 37 H 1.08998 * 109.46729 * 300.00089 * 13 12 11 38 38 H 1.09002 * 109.47033 * 59.99141 * 13 12 11 39 39 H 0.97003 * 120.00350 * 359.97438 * 14 13 12 40 40 H 0.96998 * 120.00171 * 180.02562 * 18 17 15 41 41 H 1.08001 * 126.56093 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7684 -0.3364 2.4838 6 7 2.3594 -1.1814 3.2781 7 6 3.0172 -2.1025 2.5284 8 6 3.8150 -3.2313 3.0381 9 8 4.3542 -3.9950 2.2602 10 7 3.9518 -3.4143 4.3663 11 6 4.7502 -4.5332 4.8732 12 6 4.7439 -4.5124 6.4029 13 6 5.5772 -5.6814 6.9324 14 7 5.5717 -5.6612 8.3971 15 6 6.2561 -6.6182 9.0977 16 1 6.7997 -7.3881 8.5703 17 6 6.2505 -6.5994 10.4857 18 7 5.5877 -5.6614 11.1284 19 14 7.1836 -7.9053 11.4414 20 1 8.6245 -7.8426 11.0876 21 1 7.0210 -7.6639 12.8975 22 1 6.6476 -9.2471 11.0985 23 6 2.7997 -1.7957 1.2170 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.1717 0.5074 2.7976 32 1 3.5218 -2.8051 4.9867 33 1 4.3243 -5.4725 4.5204 34 1 5.7748 -4.4409 4.5131 35 1 5.1701 -3.5731 6.7553 36 1 3.7193 -4.6044 6.7635 37 1 5.1506 -6.6205 6.5800 38 1 6.6018 -5.5898 6.5719 39 1 5.0838 -4.9694 8.8709 40 1 5.5840 -5.6480 12.0983 41 1 3.1786 -2.3320 0.3595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163267623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:02 Heat of formation + Delta-G solvation = -2.672202 kcal Electronic energy + Delta-G solvation = -20582.736293 eV Core-core repulsion = 17304.557437 eV Total energy + Delta-G solvation = -3278.178855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.22644 -40.38854 -37.50590 -36.91751 -35.87954 -33.75193 -32.15675 -31.42990 -30.38802 -28.19131 -27.12049 -25.00581 -24.02033 -23.45353 -22.55994 -21.48757 -20.75341 -19.17577 -18.45482 -17.34533 -17.19048 -16.94060 -16.51573 -16.38428 -15.57601 -15.38341 -15.29263 -15.12200 -14.94192 -14.80254 -14.49319 -14.03642 -13.73209 -13.29852 -13.17277 -13.10528 -12.77803 -12.60425 -12.44614 -12.37765 -12.15791 -12.10025 -12.05775 -11.79574 -11.35206 -11.06295 -10.93235 -10.75680 -10.16282 -9.59802 -9.01832 -7.95471 -5.25303 0.56347 1.44157 1.47679 1.51676 1.57750 1.64557 2.28117 2.53205 2.57525 3.37715 3.41440 3.59210 3.76096 3.83567 3.94849 4.07640 4.09994 4.15751 4.28802 4.39512 4.50501 4.65607 4.68789 4.71505 4.73142 4.83695 4.85201 4.87648 5.04542 5.24647 5.26005 5.27490 5.31155 5.42681 5.46841 5.48921 6.11346 6.26671 6.48780 6.86974 7.21794 7.32687 8.07391 8.31626 9.27983 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.050665 B = 0.002204 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.519679 B =12701.135465 C =13051.969191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.161 4.161 4 N -0.443 5.443 5 C 0.197 3.803 6 N -0.497 5.497 7 C -0.100 4.100 8 C 0.597 3.403 9 O -0.585 6.585 10 N -0.709 5.709 11 C 0.134 3.866 12 C -0.118 4.118 13 C 0.154 3.846 14 N -0.748 5.748 15 C -0.251 4.251 16 H 0.076 0.924 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.044 3.956 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.242 0.758 32 H 0.414 0.586 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.375 0.625 40 H 0.252 0.748 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.648 17.711 -27.661 35.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.124 5.124 5 C -0.087 4.087 6 N -0.216 5.216 7 C -0.228 4.228 8 C 0.385 3.615 9 O -0.466 6.466 10 N -0.359 5.359 11 C 0.010 3.990 12 C -0.156 4.156 13 C 0.027 3.973 14 N -0.391 5.391 15 C -0.383 4.383 16 H 0.094 0.906 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.097 4.097 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.258 0.742 32 H 0.250 0.750 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.207 0.793 40 H 0.061 0.939 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.220 17.092 -27.426 34.549 hybrid contribution 0.226 -0.311 0.540 0.663 sum -11.994 16.781 -26.886 33.887 Atomic orbital electron populations 1.22191 0.91683 1.03052 1.04920 1.21932 0.96565 0.94635 0.84967 1.22191 1.01545 0.93191 1.04921 1.45929 1.36412 1.20895 1.09202 1.25671 1.02688 1.01641 0.78738 1.70561 1.12110 1.04933 1.34010 1.20408 1.09428 1.01010 0.91911 1.17295 0.79104 0.82984 0.82162 1.90750 1.50685 1.47740 1.57406 1.45788 1.52185 1.31111 1.06846 1.21145 0.95585 0.89234 0.93048 1.21695 1.01119 0.99291 0.93537 1.20666 0.97087 0.96073 0.83481 1.42553 1.61383 1.33688 1.01433 1.19638 1.23418 1.05593 0.89628 0.90576 1.25647 1.02460 1.01397 0.97498 1.69814 1.48075 1.36885 1.07238 0.85140 0.78457 0.78654 0.77070 1.20309 1.21924 1.20300 1.22792 0.96882 0.91050 0.99015 0.90998 0.88117 0.92828 0.86656 0.88112 0.91000 0.92822 0.74171 0.75001 0.91575 0.91577 0.91083 0.91089 0.95762 0.95774 0.79316 0.93882 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.36 9.24 71.98 0.67 0.30 16 2 C 0.12 0.52 3.57 44.99 0.16 0.68 16 3 C -0.16 -0.36 9.24 71.98 0.67 0.31 16 4 N -0.44 -5.49 2.59 -505.87 -1.31 -6.80 16 5 C 0.20 2.91 11.53 180.10 2.08 4.99 16 6 N -0.50 -11.70 11.01 -188.81 -2.08 -13.78 16 7 C -0.10 -2.58 6.98 40.50 0.28 -2.30 16 8 C 0.60 18.78 7.81 86.63 0.68 19.46 16 9 O -0.58 -21.46 16.88 -4.10 -0.07 -21.53 16 10 N -0.71 -21.04 5.55 -466.49 -2.59 -23.63 16 11 C 0.13 4.15 5.67 86.38 0.49 4.64 16 12 C -0.12 -3.99 5.44 30.59 0.17 -3.82 16 13 C 0.15 6.47 6.26 86.38 0.54 7.01 16 14 N -0.75 -39.88 5.60 -343.46 -1.92 -41.81 16 15 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 16 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 17 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 18 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 19 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 C 0.04 0.83 11.22 83.72 0.94 1.77 16 24 H 0.07 0.13 7.94 -2.39 -0.02 0.11 16 25 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.12 0.27 8.07 -2.39 -0.02 0.25 16 28 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.07 0.13 7.94 -2.39 -0.02 0.11 16 30 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.24 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.41 11.38 8.19 -92.71 -0.76 10.62 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.37 20.99 7.67 -92.71 -0.71 20.28 16 40 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -77.57 351.49 1.87 -75.71 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.44 Total: 27.95 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 7.97 Total: 15.12 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -7.62 Total: -146.56 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -77.57 1.87 -75.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163267623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.035 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds