Wall clock time and date at job start Tue Mar 31 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 C 1.50708 * 109.46745 * 180.02562 * 3 2 1 5 5 C 1.35359 * 126.38319 * 275.29710 * 4 3 2 6 6 C 1.41501 * 105.49984 * 180.14383 * 5 4 3 7 7 C 1.47716 * 126.51672 * 179.84506 * 6 5 4 8 8 O 1.21573 * 120.00017 * 359.71102 * 7 6 5 9 9 N 1.34777 * 119.99706 * 179.70800 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72381 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99838 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46997 * 60.00396 * 18 16 14 20 20 H 1.48501 * 109.46950 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47074 * 300.00402 * 18 16 14 22 22 N 1.31802 * 106.96561 * 359.57867 * 6 5 4 23 23 N 1.28471 * 110.07383 * 0.26597 * 22 6 5 24 24 H 0.97003 * 124.88460 * 179.97438 * 23 22 6 25 25 H 1.09006 * 109.46683 * 300.00448 * 1 2 3 26 26 H 1.08995 * 109.47110 * 59.99901 * 1 2 3 27 27 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46914 * 239.99693 * 2 1 3 29 29 H 1.09003 * 109.46936 * 119.99861 * 2 1 3 30 30 H 1.08993 * 109.47496 * 60.00050 * 3 2 1 31 31 H 1.09003 * 109.47121 * 299.99747 * 3 2 1 32 32 H 1.07995 * 127.25416 * 359.97438 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 41 41 H 0.97003 * 120.00466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3505 1.3415 1.0841 6 6 5.6724 1.3915 0.5816 7 6 6.9171 1.3224 1.3739 8 8 6.8625 1.2165 2.5838 9 7 8.1134 1.3767 0.7555 10 6 9.3479 1.3142 1.5419 11 6 10.5544 1.4020 0.6050 12 6 11.8436 1.3374 1.4263 13 7 12.9988 1.4221 0.5292 14 6 14.2680 1.3838 1.0419 15 1 14.4174 1.2907 2.1074 16 6 15.3626 1.4636 0.1919 17 7 15.1805 1.5765 -1.1067 18 14 17.0940 1.4120 0.8913 19 1 17.2965 0.1328 1.6178 20 1 18.0783 1.5142 -0.2160 21 1 17.2835 2.5487 1.8279 22 7 5.5818 1.5057 -0.7283 23 7 4.3477 1.5367 -1.0840 24 1 4.0359 1.6168 -1.9990 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 4.0467 1.2461 2.1160 33 1 8.1571 1.4615 -0.2098 34 1 9.3731 2.1463 2.2456 35 1 9.3819 0.3731 2.0907 36 1 10.5292 0.5700 -0.0986 37 1 10.5205 2.3432 0.0562 38 1 11.8685 2.1697 2.1296 39 1 11.8778 0.3964 1.9755 40 1 12.8646 1.5046 -0.4278 41 1 15.9453 1.6318 -1.7008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163686990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:36 Heat of formation + Delta-G solvation = -1.566657 kcal Electronic energy + Delta-G solvation = -20335.880759 eV Core-core repulsion = 17057.749844 eV Total energy + Delta-G solvation = -3278.130915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.72801 -40.50014 -37.51649 -36.24722 -35.91248 -33.84355 -32.93172 -31.94679 -31.12693 -27.52663 -27.16145 -25.33572 -23.76659 -22.85746 -22.57869 -21.93221 -20.97771 -19.16303 -18.70855 -17.91127 -17.11993 -17.05660 -16.49180 -16.46681 -15.91813 -15.39036 -15.34917 -15.27907 -14.89134 -14.68491 -14.43076 -13.97788 -13.81963 -13.30400 -13.04740 -12.78221 -12.62605 -12.45974 -12.44379 -12.12242 -12.10496 -12.06439 -11.92441 -11.80059 -11.53562 -11.29967 -10.93154 -10.53023 -10.10584 -9.96434 -9.01577 -7.95778 -5.25259 0.46673 1.08428 1.47995 1.51556 1.57627 1.83077 2.20154 2.31334 2.57088 3.34468 3.37796 3.64673 3.74791 3.96007 4.07669 4.17546 4.21977 4.28818 4.43652 4.47602 4.56120 4.69550 4.71785 4.72933 4.86073 4.87489 4.94877 4.99521 5.23616 5.25454 5.30990 5.31341 5.35511 5.37536 5.48557 5.49123 6.07453 6.26430 6.41363 6.83829 7.10161 7.32829 8.07642 8.31669 9.27563 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.055571 B = 0.002100 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.736357 B =13329.570844 C =13661.150562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.047 4.047 4 C 0.038 3.962 5 C -0.198 4.198 6 C -0.036 4.036 7 C 0.598 3.402 8 O -0.571 6.571 9 N -0.706 5.706 10 C 0.132 3.868 11 C -0.119 4.119 12 C 0.153 3.847 13 N -0.747 5.747 14 C -0.252 4.252 15 H 0.076 0.924 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.977 3.023 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.277 1.277 22 N -0.268 5.268 23 N -0.362 5.362 24 H 0.461 0.539 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.415 0.585 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.375 0.625 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.257 -0.637 -1.356 33.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.226 4.226 6 C -0.195 4.195 7 C 0.384 3.616 8 O -0.449 6.449 9 N -0.357 5.357 10 C 0.008 3.992 11 C -0.157 4.157 12 C 0.026 3.974 13 N -0.390 5.390 14 C -0.384 4.384 15 H 0.094 0.906 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.805 3.195 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.203 1.203 22 N -0.105 5.105 23 N -0.079 5.079 24 H 0.309 0.691 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.180 0.820 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.207 0.793 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -32.459 -0.643 -1.272 32.490 hybrid contribution 0.729 -0.023 -0.266 0.776 sum -31.730 -0.667 -1.538 31.775 Atomic orbital electron populations 1.21765 0.94263 1.02196 1.02656 1.21520 0.96777 0.95209 1.02325 1.20378 0.83533 0.98731 1.05884 1.21811 0.96362 1.04539 0.86179 1.21681 0.90095 1.09896 1.00919 1.21763 0.95041 1.12150 0.90585 1.17207 0.82495 0.75810 0.86125 1.90765 1.87450 1.51982 1.14713 1.45826 1.04919 1.73139 1.11856 1.21201 0.81729 1.02434 0.93800 1.21703 0.92496 1.03124 0.98367 1.20678 0.85829 0.98143 0.92773 1.42538 1.01521 1.88953 1.05998 1.19643 0.84648 1.41304 0.92768 0.90597 1.25611 1.01984 1.03405 0.95789 1.69807 1.30500 1.58828 1.02816 0.85165 0.79292 0.78221 0.76790 1.20338 1.21956 1.20341 1.73495 1.03188 1.19483 1.14337 1.43419 1.02062 1.51464 1.10968 0.69060 0.92070 0.91676 0.92630 0.92032 0.92370 0.87995 0.88005 0.82045 0.74870 0.91316 0.91318 0.90916 0.90915 0.95750 0.95760 0.79303 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 71.99 0.71 0.03 16 2 C -0.12 -0.78 5.92 30.60 0.18 -0.60 16 3 C -0.05 -0.26 5.77 29.85 0.17 -0.09 16 4 C 0.04 0.49 6.48 41.40 0.27 0.76 16 5 C -0.20 -4.00 10.73 22.41 0.24 -3.76 16 6 C -0.04 -0.90 7.13 42.46 0.30 -0.59 16 7 C 0.60 17.91 7.83 86.75 0.68 18.59 16 8 O -0.57 -20.66 16.93 -3.95 -0.07 -20.72 16 9 N -0.71 -19.11 5.55 -466.08 -2.59 -21.69 16 10 C 0.13 3.83 5.67 86.38 0.49 4.32 16 11 C -0.12 -3.77 5.44 30.59 0.17 -3.61 16 12 C 0.15 6.22 6.26 86.38 0.54 6.76 16 13 N -0.75 -38.98 5.60 -343.44 -1.92 -40.90 16 14 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.99 13.06 21.65 0.28 -59.70 16 18 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 N -0.27 -5.57 11.92 -48.17 -0.57 -6.15 16 23 N -0.36 -4.71 6.83 -47.93 -0.33 -5.04 16 24 H 0.46 2.35 8.96 -219.99 -1.97 0.38 16 25 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 26 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.41 9.86 8.20 -92.71 -0.76 9.10 16 34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.38 20.51 7.67 -92.71 -0.71 19.80 16 41 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -74.68 352.27 -0.50 -75.18 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -2.39 Total: 26.02 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.06 Total: 4.23 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -5.13 Total: -133.49 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.68 -0.50 -75.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163686990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.612 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds