Wall clock time and date at job start Tue Mar 31 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47291 * 2 1 4 4 H 1.09005 * 109.47017 * 304.99889 * 3 2 1 5 5 C 1.50696 * 109.47417 * 185.00080 * 3 2 1 6 6 H 1.07997 * 120.00068 * 239.99817 * 5 3 2 7 7 C 1.37879 * 120.00100 * 59.99692 * 5 3 2 8 8 N 1.31511 * 120.00097 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00292 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46569 * 60.00158 * 9 7 5 11 11 H 1.48496 * 109.47400 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47188 * 300.00639 * 9 7 5 13 13 N 1.46497 * 109.47341 * 64.99757 * 3 2 1 14 14 C 1.34781 * 120.00160 * 275.00359 * 13 3 2 15 15 O 1.21278 * 119.99664 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99850 * 179.97438 * 14 13 3 17 17 H 1.08994 * 109.47489 * 40.00208 * 16 14 13 18 18 N 1.46905 * 109.46835 * 160.00245 * 16 14 13 19 19 C 1.53003 * 109.47103 * 279.99984 * 16 14 13 20 20 C 1.50701 * 109.46869 * 175.00153 * 19 16 14 21 21 C 1.34669 * 126.58951 * 85.04552 * 20 19 16 22 22 N 1.34128 * 108.01780 * 179.97438 * 21 20 19 23 23 C 1.30495 * 109.25774 * 359.72199 * 22 21 20 24 24 N 1.35045 * 108.69990 * 0.44365 * 23 22 21 25 25 C 1.46499 * 126.39849 * 179.82112 * 24 23 22 26 26 H 1.08995 * 109.46782 * 300.00019 * 1 2 3 27 27 H 1.08999 * 109.46915 * 60.00286 * 1 2 3 28 28 H 1.08998 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47508 * 240.00007 * 2 1 3 30 30 H 1.08993 * 109.47543 * 119.99951 * 2 1 3 31 31 H 0.96997 * 120.00425 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00088 * 95.00448 * 13 3 2 33 33 H 1.00900 * 110.99925 * 60.00070 * 18 16 14 34 34 H 1.00901 * 110.99504 * 183.95291 * 18 16 14 35 35 H 1.08997 * 109.47048 * 55.00456 * 19 16 14 36 36 H 1.09000 * 109.47000 * 294.99963 * 19 16 14 37 37 H 1.08000 * 125.99191 * 359.95790 * 21 20 19 38 38 H 1.07997 * 125.65170 * 180.29145 * 23 22 21 39 39 H 1.09002 * 109.47391 * 269.69091 * 25 24 23 40 40 H 1.09001 * 109.46813 * 149.69147 * 25 24 23 41 41 H 1.09004 * 109.47041 * 29.69274 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8813 -1.3819 10 1 6.5975 0.1473 -0.2349 11 1 6.3978 0.2178 -2.6510 12 1 6.4995 2.2815 -1.3822 13 7 1.6525 2.0975 1.2517 14 6 0.4351 2.6645 1.3669 15 8 -0.3392 2.6327 0.4340 16 6 0.0363 3.3378 2.6548 17 1 0.8859 3.8923 3.0531 18 7 -1.0761 4.2628 2.3996 19 6 -0.4027 2.2795 3.6688 20 6 -0.6841 2.9398 4.9939 21 6 -1.8384 3.5215 5.3719 22 7 -1.6791 3.9872 6.6196 23 6 -0.4720 3.7111 7.0313 24 7 0.1843 3.0631 6.0448 25 6 1.5655 2.5773 6.0928 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2720 2.1233 1.9977 33 1 -1.8765 3.7724 2.0295 34 1 -1.3196 4.7743 3.2345 35 1 0.3908 1.5425 3.7914 36 1 -1.3056 1.7852 3.3102 37 1 -2.7350 3.5995 4.7750 38 1 -0.0644 3.9617 7.9995 39 1 2.2369 3.3544 5.7276 40 1 1.6608 1.6908 5.4658 41 1 1.8265 2.3252 7.1206 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:05 Heat of formation + Delta-G solvation = 16.543788 kcal Electronic energy + Delta-G solvation = -22475.461337 eV Core-core repulsion = 19198.115749 eV Total energy + Delta-G solvation = -3277.345588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.31483 -39.27549 -35.80463 -34.75078 -34.18929 -32.39106 -30.95259 -30.68324 -27.91988 -27.21602 -26.74398 -24.07556 -22.78109 -21.60603 -20.27628 -19.88734 -19.33888 -17.65033 -17.11210 -16.22916 -15.91849 -15.48090 -15.03288 -14.71705 -14.49093 -14.28180 -13.89462 -13.59568 -13.44860 -13.20560 -13.03549 -12.91368 -12.69821 -12.36490 -11.95662 -11.63590 -11.34029 -11.27606 -11.02856 -10.85356 -10.36076 -10.21687 -10.13782 -9.80029 -9.67863 -9.11776 -9.06285 -8.75384 -8.53336 -8.33294 -7.84719 -6.15276 -4.25058 1.80623 2.56030 2.97424 3.22005 3.28133 3.28527 3.36921 3.94188 4.32011 4.44435 4.48750 4.52691 4.74280 4.84313 4.92967 5.06405 5.13091 5.16235 5.23945 5.39093 5.52758 5.62498 5.76155 6.17774 6.34432 6.40051 6.54322 6.61206 6.97192 6.98052 7.11705 7.19703 7.32673 7.42315 7.56254 7.58645 7.70159 7.87500 7.88334 8.14924 8.63611 8.75047 9.11749 9.42563 10.89954 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.004266 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.760559 B = 6561.629526 C = 7212.339761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.509 3.491 15 O -0.534 6.534 16 C 0.082 3.918 17 H 0.091 0.909 18 N -0.823 5.823 19 C -0.075 4.075 20 C -0.017 4.017 21 C -0.029 4.029 22 N -0.492 5.492 23 C 0.176 3.824 24 N -0.456 5.456 25 C 0.066 3.934 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.350 0.650 34 H 0.343 0.657 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 2.600 16.494 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.292 3.708 15 O -0.411 6.411 16 C -0.034 4.034 17 H 0.109 0.891 18 N -0.355 5.355 19 C -0.117 4.117 20 C -0.132 4.132 21 C -0.177 4.177 22 N -0.210 5.210 23 C -0.106 4.106 24 N -0.139 5.139 25 C -0.076 4.076 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.184 0.816 38 H 0.220 0.780 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.115 3.194 15.532 16.382 hybrid contribution 1.578 -1.056 0.656 2.009 sum -2.537 2.138 16.188 16.524 Atomic orbital electron populations 1.21839 0.98376 0.97990 1.01208 1.21933 0.92568 0.99864 1.02207 1.18766 0.94134 0.89069 0.81049 0.93280 1.21179 0.90731 1.39147 1.06338 0.92251 1.24877 0.98541 0.94806 0.95375 1.69875 1.35226 1.37465 1.09290 0.86532 0.84922 0.78316 0.77457 1.20229 1.21107 1.20184 1.46474 1.14550 1.56225 1.18436 1.20051 0.82981 0.79164 0.88598 1.90665 1.51554 1.58770 1.40113 1.21383 0.96388 0.92752 0.92898 0.89088 1.58522 1.11494 1.30021 1.35449 1.20853 1.03878 0.97888 0.89046 1.21189 0.91928 1.08133 0.91991 1.22063 0.97906 1.03788 0.93949 1.70271 1.16347 1.22512 1.11834 1.24923 0.89622 1.00250 0.95768 1.45320 1.12257 1.43441 1.12892 1.22131 0.79467 1.01435 1.04611 0.94422 0.93068 0.95901 0.88303 0.95184 0.92475 0.78379 0.83501 0.84277 0.90119 0.88881 0.81571 0.77955 0.90036 0.89235 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.61 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.58 2.24 -69.09 -0.15 6.42 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.68 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -13.69 5.02 -54.93 -0.28 -13.96 16 14 C 0.51 9.42 5.65 -10.98 -0.06 9.36 16 15 O -0.53 -11.92 13.39 5.56 0.07 -11.85 16 16 C 0.08 1.13 3.20 -68.86 -0.22 0.91 16 17 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 18 N -0.82 -11.20 8.93 -5.65 -0.05 -11.25 16 19 C -0.08 -0.86 5.18 -27.88 -0.14 -1.01 16 20 C -0.02 -0.19 5.81 -81.60 -0.47 -0.66 16 21 C -0.03 -0.34 10.49 -17.81 -0.19 -0.53 16 22 N -0.49 -6.19 11.25 -14.67 -0.17 -6.36 16 23 C 0.18 1.73 12.56 -90.38 -1.14 0.59 16 24 N -0.46 -4.26 3.15 -121.36 -0.38 -4.64 16 25 C 0.07 0.40 11.00 59.85 0.66 1.06 16 26 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.38 6.33 8.54 -40.82 -0.35 5.98 16 33 H 0.35 4.77 8.58 -39.29 -0.34 4.43 16 34 H 0.34 4.08 7.29 -39.29 -0.29 3.79 16 35 H 0.08 0.88 7.09 -51.93 -0.37 0.51 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.54 7.12 -51.93 -0.37 0.17 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -31.88 334.66 -8.13 -40.01 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.04 Total: 13.40 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.94 Total: -1.89 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.25 Total: -59.81 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.88 -8.13 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.556 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds