Wall clock time and date at job start Tue Mar 31 2020 01:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47221 * 2 1 4 4 C 1.35365 * 126.38454 * 275.30144 * 3 2 1 5 5 C 1.41500 * 105.49805 * 180.13910 * 4 3 2 6 6 C 1.47714 * 126.51855 * 179.84190 * 5 4 3 7 7 O 1.21572 * 119.99717 * 359.71707 * 6 5 4 8 8 N 1.34771 * 120.00261 * 179.71263 * 6 5 4 9 9 C 1.46496 * 120.00290 * 179.72375 * 8 6 5 10 10 C 1.53004 * 109.47429 * 180.27563 * 9 8 6 11 11 C 1.53003 * 109.47004 * 180.02562 * 10 9 8 12 12 N 1.46495 * 109.46746 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00318 * 90.00130 * 12 11 10 14 14 C 1.36932 * 120.00053 * 269.99606 * 12 11 10 15 15 H 1.07999 * 120.00257 * 142.03938 * 14 12 11 16 16 C 1.38813 * 120.00296 * 322.03926 * 14 12 11 17 17 N 1.31617 * 120.00146 * 157.01389 * 16 14 12 18 18 Si 1.86800 * 119.99649 * 337.02398 * 16 14 12 19 19 H 1.48495 * 109.47540 * 95.67828 * 18 16 14 20 20 H 1.48510 * 109.47029 * 215.67667 * 18 16 14 21 21 H 1.48497 * 109.47105 * 335.67256 * 18 16 14 22 22 N 1.31807 * 106.96430 * 359.58368 * 5 4 3 23 23 N 1.28466 * 110.07490 * 0.26361 * 22 5 4 24 24 H 0.97004 * 124.88538 * 180.02562 * 23 22 5 25 25 H 1.09006 * 109.47115 * 59.99529 * 1 2 3 26 26 H 1.08991 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46991 * 299.99812 * 1 2 3 28 28 H 1.09006 * 109.47293 * 240.00503 * 2 1 3 29 29 H 1.08994 * 109.47369 * 120.00166 * 2 1 3 30 30 H 1.07995 * 127.25278 * 359.97438 * 4 3 2 31 31 H 0.97006 * 119.99925 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47503 * 300.28186 * 9 8 6 33 33 H 1.09002 * 109.46740 * 60.27709 * 9 8 6 34 34 H 1.08992 * 109.47099 * 300.00338 * 10 9 8 35 35 H 1.08998 * 109.46368 * 60.00558 * 10 9 8 36 36 H 1.09008 * 109.46931 * 300.00214 * 11 10 9 37 37 H 1.09002 * 109.47236 * 60.00102 * 11 10 9 38 38 H 1.09010 * 109.47341 * 85.64514 * 13 12 11 39 39 H 1.08995 * 109.47288 * 205.64649 * 13 12 11 40 40 H 1.08999 * 109.46874 * 325.64898 * 13 12 11 41 41 H 0.97004 * 119.99978 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2051 2.2115 -1.0851 5 6 2.6928 3.4413 -0.5831 6 6 3.0426 4.6375 -1.3758 7 8 2.9245 4.6209 -2.5857 8 7 3.4927 5.7475 -0.7580 9 6 3.8453 6.9319 -1.5447 10 6 4.3303 8.0405 -0.6082 11 6 4.6980 9.2776 -1.4299 12 7 5.1630 10.3387 -0.5333 13 6 6.5849 10.4421 -0.1961 14 6 4.2686 11.2341 -0.0105 15 1 4.3820 11.5795 1.0064 16 6 3.2160 11.6979 -0.7876 17 7 2.1312 12.1709 -0.2115 18 14 3.3390 11.6504 -2.6509 19 1 2.6861 10.4172 -3.1589 20 1 2.6602 12.8412 -3.2224 21 1 4.7685 11.6552 -3.0529 22 7 2.7703 3.3182 0.7269 23 7 2.3883 2.1445 1.0830 24 1 2.3593 1.8244 1.9982 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.0138 1.9564 -2.1169 31 1 3.5872 5.7607 0.2074 32 1 4.6381 6.6780 -2.2483 33 1 2.9693 7.2774 -2.0936 34 1 3.5376 8.2944 0.0953 35 1 5.2063 7.6948 -0.0594 36 1 5.4908 9.0238 -2.1339 37 1 3.8218 9.6230 -1.9786 38 1 7.0990 11.0221 -0.9626 39 1 6.6944 10.9373 0.7687 40 1 7.0193 9.4438 -0.1435 41 1 1.3955 12.4946 -0.7546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234205230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:22 Heat of formation + Delta-G solvation = 47.990840 kcal Electronic energy + Delta-G solvation = -21176.740420 eV Core-core repulsion = 17900.758479 eV Total energy + Delta-G solvation = -3275.981941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.90441 -39.21656 -36.44181 -34.79927 -34.58271 -32.23111 -31.69453 -30.67507 -29.55148 -26.47640 -25.63479 -24.18143 -23.57262 -21.57114 -21.30876 -20.76470 -19.78465 -17.93959 -16.92049 -16.70638 -16.06104 -15.53622 -15.50756 -14.89869 -14.80839 -14.35583 -14.00864 -13.76984 -13.61178 -13.29860 -13.17456 -12.87968 -12.66180 -12.12184 -12.04503 -11.66803 -11.64232 -11.31494 -11.15239 -11.00695 -10.87420 -10.49378 -10.37633 -10.02709 -9.73654 -9.60074 -9.49786 -9.21929 -8.83589 -8.48211 -6.79407 -5.98215 -3.39256 1.45270 1.89031 2.58727 3.31075 3.36187 3.46198 3.50562 3.56596 4.20643 4.30101 4.51560 4.55566 4.78669 5.00231 5.02571 5.12496 5.28375 5.38150 5.41257 5.43941 5.55282 5.68726 5.71532 5.74813 5.91082 6.10290 6.15701 6.21897 6.31407 6.38607 6.55341 6.67151 6.73028 6.74205 6.81812 6.98477 7.50982 7.78862 8.07808 8.32322 8.39667 9.00938 9.73304 10.14852 11.17391 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.003055 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.141901 B = 9163.083078 C = 9317.921623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.013 3.987 4 C -0.176 4.176 5 C -0.006 4.006 6 C 0.598 3.402 7 O -0.537 6.537 8 N -0.710 5.710 9 C 0.117 3.883 10 C -0.146 4.146 11 C 0.142 3.858 12 N -0.612 5.612 13 C 0.125 3.875 14 C -0.271 4.271 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.283 1.283 20 H -0.301 1.301 21 H -0.270 1.270 22 N -0.257 5.257 23 N -0.380 5.380 24 H 0.444 0.556 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.407 0.593 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.006 0.994 39 H 0.044 0.956 40 H 0.027 0.973 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -25.542 2.260 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.204 4.204 5 C -0.167 4.167 6 C 0.382 3.618 7 O -0.412 6.412 8 N -0.361 5.361 9 C -0.006 4.006 10 C -0.186 4.186 11 C 0.016 3.984 12 N -0.336 5.336 13 C -0.021 4.021 14 C -0.400 4.400 15 H 0.095 0.905 16 C -0.165 4.165 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.211 1.211 20 H -0.229 1.229 21 H -0.194 1.194 22 N -0.093 5.093 23 N -0.095 5.095 24 H 0.288 0.712 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.242 0.758 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.119 -24.781 2.284 24.886 hybrid contribution -0.292 -0.520 -0.701 0.921 sum -0.173 -25.301 1.583 25.351 Atomic orbital electron populations 1.21792 0.93948 1.02284 1.02811 1.20117 0.96498 0.88631 1.03981 1.21451 1.05559 0.96894 0.87359 1.21511 1.06708 0.92291 0.99854 1.22024 1.07852 0.97013 0.89842 1.16917 0.77301 0.81260 0.86360 1.90790 1.54194 1.83011 1.13205 1.45976 1.65539 1.13058 1.11542 1.21532 1.00465 0.84032 0.94584 1.22388 1.01652 0.95101 0.99483 1.21040 0.97935 0.87457 0.91984 1.44038 1.02932 1.30237 1.56423 1.21079 0.85096 0.97526 0.98366 1.18779 1.05185 1.19719 0.96318 0.90481 1.25482 0.96178 0.97062 0.97746 1.69883 1.04469 1.44167 1.35487 0.86938 0.78311 0.76213 0.87939 1.21066 1.22876 1.19432 1.73578 1.18117 1.02484 1.15119 1.43305 1.47703 1.08617 1.09840 0.71206 0.91772 0.91710 0.92637 0.88995 0.90646 0.82054 0.75835 0.91613 0.91304 0.90473 0.92165 0.94077 0.92677 0.97559 0.93686 0.95472 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.35 16 2 C -0.05 -0.25 6.49 -27.88 -0.18 -0.44 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 4 C -0.18 -2.02 10.73 -39.36 -0.42 -2.44 16 5 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 6 C 0.60 9.84 7.82 -12.39 -0.10 9.74 16 7 O -0.54 -10.35 16.93 5.30 0.09 -10.26 16 8 N -0.71 -11.08 5.55 -61.29 -0.34 -11.42 16 9 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 10 C -0.15 -2.69 5.65 -26.73 -0.15 -2.84 16 11 C 0.14 3.09 4.53 -4.04 -0.02 3.07 16 12 N -0.61 -14.80 2.47 -181.12 -0.45 -15.25 16 13 C 0.12 2.52 10.70 59.85 0.64 3.16 16 14 C -0.27 -7.67 9.88 -15.06 -0.15 -7.82 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 16 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 17 N -0.90 -27.65 13.97 55.49 0.78 -26.88 16 18 Si 0.88 22.62 25.10 -169.99 -4.27 18.35 16 19 H -0.28 -7.09 6.68 56.52 0.38 -6.71 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 N -0.26 -3.12 11.92 33.42 0.40 -2.72 16 23 N -0.38 -3.23 6.83 33.50 0.23 -3.00 16 24 H 0.44 2.10 8.96 -190.44 -1.71 0.39 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.41 5.72 8.20 -40.82 -0.33 5.39 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.80 8.07 -51.92 -0.42 0.38 16 37 H 0.06 1.32 3.38 -51.93 -0.18 1.14 16 38 H 0.01 0.13 8.14 -51.92 -0.42 -0.30 16 39 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 40 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -34.68 344.51 -7.32 -42.00 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.71 Total: 0.07 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.25 Total: 3.92 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.62 Total: -59.27 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.27 Total: 18.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.68 -7.32 -42.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234205230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.992 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds