Wall clock time and date at job start Tue Mar 31 2020 01:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47221 * 2 1 4 4 C 1.35365 * 126.38454 * 275.30144 * 3 2 1 5 5 C 1.41500 * 105.49805 * 180.13910 * 4 3 2 6 6 C 1.47714 * 126.51855 * 179.84190 * 5 4 3 7 7 O 1.21572 * 119.99717 * 359.71707 * 6 5 4 8 8 N 1.34771 * 120.00261 * 179.71263 * 6 5 4 9 9 C 1.46496 * 120.00290 * 179.72375 * 8 6 5 10 10 C 1.53004 * 109.47429 * 180.27563 * 9 8 6 11 11 C 1.53003 * 109.47004 * 180.02562 * 10 9 8 12 12 N 1.46495 * 109.46746 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00318 * 90.00130 * 12 11 10 14 14 C 1.36932 * 120.00053 * 269.99606 * 12 11 10 15 15 H 1.07999 * 120.00257 * 142.03938 * 14 12 11 16 16 C 1.38813 * 120.00296 * 322.03926 * 14 12 11 17 17 N 1.31617 * 120.00146 * 157.01389 * 16 14 12 18 18 Si 1.86800 * 119.99649 * 337.02398 * 16 14 12 19 19 H 1.48495 * 109.47540 * 95.67828 * 18 16 14 20 20 H 1.48510 * 109.47029 * 215.67667 * 18 16 14 21 21 H 1.48497 * 109.47105 * 335.67256 * 18 16 14 22 22 N 1.31807 * 106.96430 * 359.58368 * 5 4 3 23 23 N 1.28466 * 110.07490 * 0.26361 * 22 5 4 24 24 H 0.97004 * 124.88538 * 180.02562 * 23 22 5 25 25 H 1.09006 * 109.47115 * 59.99529 * 1 2 3 26 26 H 1.08991 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46991 * 299.99812 * 1 2 3 28 28 H 1.09006 * 109.47293 * 240.00503 * 2 1 3 29 29 H 1.08994 * 109.47369 * 120.00166 * 2 1 3 30 30 H 1.07995 * 127.25278 * 359.97438 * 4 3 2 31 31 H 0.97006 * 119.99925 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47503 * 300.28186 * 9 8 6 33 33 H 1.09002 * 109.46740 * 60.27709 * 9 8 6 34 34 H 1.08992 * 109.47099 * 300.00338 * 10 9 8 35 35 H 1.08998 * 109.46368 * 60.00558 * 10 9 8 36 36 H 1.09008 * 109.46931 * 300.00214 * 11 10 9 37 37 H 1.09002 * 109.47236 * 60.00102 * 11 10 9 38 38 H 1.09010 * 109.47341 * 85.64514 * 13 12 11 39 39 H 1.08995 * 109.47288 * 205.64649 * 13 12 11 40 40 H 1.08999 * 109.46874 * 325.64898 * 13 12 11 41 41 H 0.97004 * 119.99978 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2051 2.2115 -1.0851 5 6 2.6928 3.4413 -0.5831 6 6 3.0426 4.6375 -1.3758 7 8 2.9245 4.6209 -2.5857 8 7 3.4927 5.7475 -0.7580 9 6 3.8453 6.9319 -1.5447 10 6 4.3303 8.0405 -0.6082 11 6 4.6980 9.2776 -1.4299 12 7 5.1630 10.3387 -0.5333 13 6 6.5849 10.4421 -0.1961 14 6 4.2686 11.2341 -0.0105 15 1 4.3820 11.5795 1.0064 16 6 3.2160 11.6979 -0.7876 17 7 2.1312 12.1709 -0.2115 18 14 3.3390 11.6504 -2.6509 19 1 2.6861 10.4172 -3.1589 20 1 2.6602 12.8412 -3.2224 21 1 4.7685 11.6552 -3.0529 22 7 2.7703 3.3182 0.7269 23 7 2.3883 2.1445 1.0830 24 1 2.3593 1.8244 1.9982 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.0138 1.9564 -2.1169 31 1 3.5872 5.7607 0.2074 32 1 4.6381 6.6780 -2.2483 33 1 2.9693 7.2774 -2.0936 34 1 3.5376 8.2944 0.0953 35 1 5.2063 7.6948 -0.0594 36 1 5.4908 9.0238 -2.1339 37 1 3.8218 9.6230 -1.9786 38 1 7.0990 11.0221 -0.9626 39 1 6.6944 10.9373 0.7687 40 1 7.0193 9.4438 -0.1435 41 1 1.3955 12.4946 -0.7546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234205230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:22 Heat of formation + Delta-G solvation = 22.339453 kcal Electronic energy + Delta-G solvation = -21177.852747 eV Core-core repulsion = 17900.758479 eV Total energy + Delta-G solvation = -3277.094269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.73629 -40.51702 -38.19558 -36.19843 -35.21857 -33.87771 -33.12935 -32.11954 -30.28130 -28.17827 -27.33988 -24.97679 -24.58879 -23.13573 -22.51023 -22.06835 -21.02006 -18.80673 -18.61426 -18.00799 -17.39532 -17.00350 -16.86816 -16.32267 -15.77164 -15.32140 -15.21534 -15.16903 -14.88313 -14.69640 -14.52009 -14.22496 -14.01173 -13.38163 -13.33129 -12.96618 -12.70983 -12.68070 -12.51495 -12.38029 -12.17625 -12.10285 -11.76133 -11.74604 -11.39198 -11.35031 -10.63913 -10.54650 -10.12039 -9.99057 -8.77424 -8.22139 -5.59532 0.45028 1.08006 1.31040 1.40300 1.51529 1.82445 2.19966 2.29748 2.41118 3.02609 3.33556 3.42271 3.66629 3.96808 4.04228 4.14371 4.32766 4.40002 4.41810 4.50972 4.52586 4.67495 4.70638 4.76634 4.77562 4.80798 5.02411 5.07803 5.14095 5.19261 5.21686 5.26728 5.30749 5.39962 5.41329 5.93561 6.07085 6.15603 6.40447 6.82661 6.98325 7.08564 7.62396 8.04751 8.97565 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.003055 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.141901 B = 9163.083078 C = 9317.921623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.038 3.962 4 C -0.200 4.200 5 C -0.036 4.036 6 C 0.596 3.404 7 O -0.573 6.573 8 N -0.705 5.705 9 C 0.126 3.874 10 C -0.127 4.127 11 C 0.134 3.866 12 N -0.627 5.627 13 C 0.122 3.878 14 C -0.260 4.260 15 H 0.043 0.957 16 C -0.018 4.018 17 N -0.946 5.946 18 Si 0.938 3.062 19 H -0.274 1.274 20 H -0.307 1.307 21 H -0.259 1.259 22 N -0.269 5.269 23 N -0.362 5.362 24 H 0.461 0.539 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.162 0.838 31 H 0.414 0.586 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.015 0.985 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 -28.434 2.238 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.089 4.089 4 C -0.228 4.228 5 C -0.196 4.196 6 C 0.382 3.618 7 O -0.451 6.451 8 N -0.356 5.356 9 C 0.002 3.998 10 C -0.168 4.168 11 C 0.009 3.991 12 N -0.351 5.351 13 C -0.022 4.022 14 C -0.390 4.390 15 H 0.060 0.940 16 C -0.215 4.215 17 N -0.590 5.590 18 Si 0.767 3.233 19 H -0.201 1.201 20 H -0.236 1.236 21 H -0.183 1.183 22 N -0.106 5.106 23 N -0.079 5.079 24 H 0.310 0.690 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.180 0.820 31 H 0.251 0.749 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.249 -27.700 2.294 27.823 hybrid contribution -0.604 0.272 -0.552 0.862 sum 0.645 -27.428 1.743 27.491 Atomic orbital electron populations 1.21792 0.93796 1.03255 1.01973 1.20301 0.96400 0.86218 1.05974 1.21905 1.03043 0.97888 0.86085 1.21693 1.07937 0.92189 1.00997 1.21754 1.10273 0.96919 0.90609 1.17269 0.76465 0.81905 0.86188 1.90754 1.55783 1.83779 1.14764 1.45867 1.65368 1.12557 1.11823 1.21320 0.99999 0.84116 0.94340 1.22109 1.01586 0.94351 0.98723 1.21152 0.97990 0.87684 0.92302 1.44200 1.04042 1.30289 1.56595 1.21212 0.82892 0.99781 0.98351 1.18685 1.05599 1.19700 0.95021 0.93950 1.26066 0.95959 0.97623 1.01860 1.69998 1.05448 1.46580 1.36994 0.85930 0.78664 0.76046 0.82679 1.20139 1.23601 1.18272 1.73494 1.18733 1.04123 1.14296 1.43417 1.45915 1.07570 1.10993 0.69017 0.93250 0.89866 0.92892 0.87857 0.87822 0.82035 0.74937 0.90403 0.93202 0.93114 0.90000 0.91079 0.95072 0.96700 0.94011 0.92006 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.31 16 2 C -0.05 -0.31 6.49 29.85 0.19 -0.12 16 3 C 0.04 0.54 6.48 41.41 0.27 0.81 16 4 C -0.20 -4.44 10.73 22.41 0.24 -4.20 16 5 C -0.04 -0.99 7.13 42.46 0.30 -0.69 16 6 C 0.60 19.69 7.82 86.75 0.68 20.36 16 7 O -0.57 -22.41 16.93 -3.94 -0.07 -22.48 16 8 N -0.71 -21.72 5.55 -466.10 -2.59 -24.31 16 9 C 0.13 4.20 5.67 86.38 0.49 4.69 16 10 C -0.13 -4.55 5.65 30.60 0.17 -4.38 16 11 C 0.13 5.58 4.53 86.38 0.39 5.97 16 12 N -0.63 -29.48 2.47 -726.93 -1.79 -31.28 16 13 C 0.12 4.63 10.70 127.77 1.37 6.00 16 14 C -0.26 -14.88 9.88 84.03 0.83 -14.05 16 15 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 16 C -0.02 -1.08 5.29 84.86 0.45 -0.64 16 17 N -0.95 -59.89 13.97 21.65 0.30 -59.59 16 18 Si 0.94 47.18 25.10 68.60 1.72 48.91 16 19 H -0.27 -13.28 6.68 99.48 0.66 -12.61 16 20 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 21 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 22 N -0.27 -6.19 11.92 -48.17 -0.57 -6.77 16 23 N -0.36 -5.30 6.83 -47.93 -0.33 -5.63 16 24 H 0.46 2.97 8.96 -219.99 -1.97 0.99 16 25 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.49 8.14 -2.38 -0.02 0.48 16 29 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.41 11.40 8.20 -92.70 -0.76 10.64 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.07 2.54 8.07 -2.38 -0.02 2.52 16 37 H 0.03 1.46 3.38 -2.39 -0.01 1.45 16 38 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 40 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 41 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -76.73 344.51 1.04 -75.69 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -1.73 Total: 11.99 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.10 Total: 13.46 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -4.98 Total: -127.57 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.07 Total: -22.48 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.72 Total: 48.91 kcal Total: -76.73 1.04 -75.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234205230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.029 kcal (2) G-P(sol) polarization free energy of solvation -76.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds