Wall clock time and date at job start Tue Mar 31 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00095 * 2 1 4 4 C 1.50701 * 119.99903 * 179.97438 * 2 1 3 5 5 N 1.46906 * 109.47168 * 263.62363 * 4 2 1 6 6 C 1.46898 * 111.00018 * 72.02627 * 5 4 2 7 7 C 1.38578 * 110.99584 * 195.98519 * 5 4 2 8 8 N 1.31212 * 126.47851 * 0.02562 * 7 5 4 9 9 N 1.28526 * 109.86427 * 179.97438 * 8 7 5 10 10 C 1.30300 * 110.05142 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.34382 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47198 * 270.03704 * 11 10 9 13 13 H 1.08998 * 109.46740 * 55.00340 * 12 11 10 14 14 O 1.42903 * 109.47064 * 295.00797 * 12 11 10 15 15 C 1.50698 * 109.47294 * 175.00315 * 12 11 10 16 16 H 1.07996 * 119.99868 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99901 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99803 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 119.99901 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47299 * 60.00047 * 19 17 15 21 21 H 1.48504 * 109.47139 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47214 * 299.99910 * 19 17 15 23 23 N 1.36459 * 126.46736 * 180.02562 * 7 5 4 24 24 C 1.46503 * 127.13896 * 359.97438 * 23 7 5 25 25 H 1.07996 * 120.00412 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00251 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46630 * 235.13145 * 3 2 1 28 28 H 1.09000 * 109.46957 * 355.12679 * 3 2 1 29 29 H 1.08991 * 109.47389 * 115.13135 * 3 2 1 30 30 H 1.09000 * 109.47093 * 143.62078 * 4 2 1 31 31 H 1.09002 * 109.47066 * 23.62403 * 4 2 1 32 32 H 1.08995 * 109.46908 * 188.10951 * 6 5 4 33 33 H 1.08999 * 109.47406 * 308.11511 * 6 5 4 34 34 H 1.09003 * 109.46896 * 68.11338 * 6 5 4 35 35 H 1.09000 * 109.47508 * 30.04207 * 11 10 9 36 36 H 1.09005 * 109.47005 * 150.04449 * 11 10 9 37 37 H 0.96699 * 113.99698 * 299.99347 * 14 12 11 38 38 H 0.96998 * 120.00065 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47071 * 90.02425 * 24 23 7 40 40 H 1.08995 * 109.46929 * 210.02947 * 24 23 7 41 41 H 1.09001 * 109.46847 * 330.02505 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4415 -1.6517 1.3772 6 6 1.2683 -2.0706 2.1557 7 6 3.4224 -2.6305 1.3913 8 7 3.9706 -3.2006 0.3443 9 7 4.8440 -4.0635 0.7243 10 6 4.9040 -4.0953 2.0255 11 6 5.8025 -4.9742 2.8569 12 6 5.0879 -6.2929 3.1595 13 1 4.7698 -6.7563 2.2257 14 8 3.9449 -6.0382 3.9785 15 6 6.0294 -7.2194 3.8850 16 1 7.0364 -6.8996 4.1082 17 6 5.6049 -8.4755 4.2636 18 7 4.3784 -8.8647 3.9921 19 14 6.7721 -9.6242 5.1622 20 1 7.2057 -8.9933 6.4347 21 1 6.0785 -10.9040 5.4560 22 1 7.9597 -9.8884 4.3108 23 7 4.0005 -3.1836 2.4967 24 6 3.7134 -2.8658 3.8978 25 1 -0.5400 0.9352 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 2.7540 1.3259 -0.8432 28 1 1.3584 2.1317 -0.0873 29 1 2.6231 1.4016 0.9303 30 1 2.9617 -1.2064 -0.6090 31 1 1.4297 -2.0907 -0.4109 32 1 1.5485 -2.1825 3.2031 33 1 0.4857 -1.3171 2.0674 34 1 0.9004 -3.0231 1.7743 35 1 6.7220 -5.1769 2.3077 36 1 6.0419 -4.4679 3.7920 37 1 4.1536 -5.6254 4.8277 38 1 4.0797 -9.7481 4.2588 39 1 2.9163 -3.5142 4.2614 40 1 4.6105 -3.0217 4.4968 41 1 3.3998 -1.8249 3.9772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262900282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:40 Heat of formation + Delta-G solvation = 55.111199 kcal Electronic energy + Delta-G solvation = -22354.201584 eV Core-core repulsion = 19078.528405 eV Total energy + Delta-G solvation = -3275.673179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54169 -38.30872 -36.18732 -35.03854 -34.17626 -32.20069 -31.23009 -28.57845 -27.56118 -27.42817 -27.22300 -25.39746 -24.34472 -21.78060 -20.67770 -20.01146 -18.51613 -17.32741 -16.75815 -16.31156 -15.85315 -15.19831 -14.97746 -14.66398 -14.50372 -14.25072 -13.82340 -13.60136 -13.31435 -13.16645 -12.96927 -12.86951 -12.63866 -12.03204 -11.85341 -11.61622 -11.34476 -11.27888 -11.13404 -11.04776 -10.86360 -10.81027 -10.20718 -10.14258 -9.76961 -9.68719 -9.33755 -9.12803 -8.64104 -8.42227 -7.79342 -6.07077 -4.26848 1.83862 2.21896 2.71035 3.25691 3.29880 3.31715 3.34583 3.88031 4.33577 4.60470 4.70272 4.77334 4.93580 5.06982 5.17683 5.19633 5.27417 5.30825 5.35849 5.50424 5.53640 5.54948 5.61570 5.67612 5.70311 5.79841 5.81706 6.10887 6.15192 6.29811 6.36359 6.39096 6.56215 6.68204 6.75619 6.93162 7.46862 7.63667 7.76414 8.05945 8.74865 9.22253 9.25914 9.49299 10.97015 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040991 B = 0.003618 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.920059 B = 7737.844652 C = 7897.403941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C -0.115 4.115 4 C 0.102 3.898 5 N -0.447 5.447 6 C 0.014 3.986 7 C 0.335 3.665 8 N -0.326 5.326 9 N -0.298 5.298 10 C 0.218 3.782 11 C -0.062 4.062 12 C 0.238 3.762 13 H 0.064 0.936 14 O -0.563 6.563 15 C -0.575 4.575 16 H 0.059 0.941 17 C 0.081 3.919 18 N -0.857 5.857 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.474 5.474 24 C 0.080 3.920 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.340 0.660 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 17.948 -1.097 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.113 4.113 3 C -0.171 4.171 4 C -0.025 4.025 5 N -0.170 5.170 6 C -0.133 4.133 7 C -0.022 4.022 8 N -0.171 5.171 9 N -0.136 5.136 10 C -0.050 4.050 11 C -0.103 4.103 12 C 0.179 3.821 13 H 0.081 0.919 14 O -0.365 6.365 15 C -0.613 4.613 16 H 0.077 0.923 17 C -0.126 4.126 18 N -0.492 5.492 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 N -0.168 5.168 24 C -0.064 4.064 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.183 0.817 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.372 17.635 -2.830 18.963 hybrid contribution 0.261 -0.777 2.074 2.230 sum -6.111 16.858 -0.756 17.947 Atomic orbital electron populations 1.23800 0.95121 1.01971 1.02018 1.21652 0.95031 0.95452 0.99139 1.20822 1.00094 0.93610 1.02614 1.21079 1.00844 0.93876 0.86685 1.58606 1.08826 1.33832 1.15740 1.22697 0.91662 1.00464 0.98486 1.22436 0.99391 0.96007 0.84361 1.74466 1.11066 1.08748 1.22822 1.73961 1.16021 1.15079 1.08567 1.25214 0.94588 0.93072 0.92117 1.21198 0.96734 0.95980 0.96339 1.19406 0.83886 0.86673 0.92094 0.91870 1.86632 1.35741 1.83658 1.30502 1.21540 0.99008 1.00080 1.40634 0.92284 1.25038 0.94842 0.97694 0.95039 1.70069 1.16031 1.19155 1.43989 0.86684 0.81098 0.80081 0.80202 1.20132 1.21216 1.19993 1.45910 1.31453 1.31933 1.07543 1.22070 1.03780 1.02023 0.78488 0.88143 0.88510 0.91596 0.92245 0.91073 0.88307 0.92457 0.90533 0.89506 0.94033 0.88528 0.91107 0.81719 0.92826 0.89688 0.89208 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 12.54 29.02 0.36 -1.24 16 2 C -0.11 -1.09 5.12 -101.06 -0.52 -1.61 16 3 C -0.11 -0.97 10.12 36.01 0.36 -0.61 16 4 C 0.10 1.27 4.73 -4.97 -0.02 1.24 16 5 N -0.45 -6.06 4.75 -183.76 -0.87 -6.93 16 6 C 0.01 0.16 9.15 60.06 0.55 0.71 16 7 C 0.33 5.82 7.18 -318.88 -2.29 3.53 16 8 N -0.33 -6.69 11.02 30.31 0.33 -6.36 16 9 N -0.30 -6.63 12.18 32.99 0.40 -6.23 16 10 C 0.22 4.38 7.09 -154.01 -1.09 3.29 16 11 C -0.06 -1.24 5.21 -27.88 -0.15 -1.38 16 12 C 0.24 5.81 2.81 -27.88 -0.08 5.74 16 13 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 14 O -0.56 -13.39 12.29 -35.23 -0.43 -13.82 16 15 C -0.57 -15.08 8.76 -34.44 -0.30 -15.38 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 18 N -0.86 -24.89 12.84 55.43 0.71 -24.17 16 19 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 N -0.47 -8.06 3.21 -121.46 -0.39 -8.45 16 24 C 0.08 0.98 9.18 59.85 0.55 1.53 16 25 H 0.10 0.70 7.84 -52.49 -0.41 0.28 16 26 H 0.10 0.79 7.97 -52.48 -0.42 0.38 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 31 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 32 H 0.08 0.81 5.58 -51.93 -0.29 0.52 16 33 H 0.09 0.81 6.28 -51.93 -0.33 0.48 16 34 H 0.04 0.54 8.12 -51.93 -0.42 0.11 16 35 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 36 H 0.07 1.22 7.27 -51.93 -0.38 0.84 16 37 H 0.34 6.87 9.04 45.56 0.41 7.28 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.09 1.00 7.25 -51.93 -0.38 0.62 16 41 H 0.08 0.84 7.51 -51.93 -0.39 0.45 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -32.84 341.02 -8.29 -41.13 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.45 Total: 6.18 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.72 Total: -2.08 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.18 Total: -52.14 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.43 Total: -13.82 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.84 -8.29 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262900282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.242 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds