Wall clock time and date at job start Tue Mar 31 2020 01:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30852 * 125.41716 * 2 1 4 4 C 1.33320 * 109.68434 * 179.97438 * 3 2 1 5 5 C 1.36658 * 107.78729 * 0.02562 * 4 3 2 6 6 C 1.46765 * 126.84465 * 180.02562 * 5 4 3 7 7 O 1.21682 * 119.99683 * 184.91863 * 6 5 4 8 8 N 1.34771 * 120.00135 * 4.91077 * 6 5 4 9 9 C 1.46502 * 120.00045 * 174.61135 * 8 6 5 10 10 C 1.53001 * 109.47022 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47024 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.46589 * 55.00063 * 11 10 9 13 13 C 1.52996 * 109.47128 * 174.99610 * 11 10 9 14 14 N 1.46498 * 109.47170 * 294.99866 * 11 10 9 15 15 C 1.36936 * 119.99860 * 154.99915 * 14 11 10 16 16 H 1.08003 * 120.00192 * 359.97438 * 15 14 11 17 17 C 1.38807 * 120.00237 * 179.72538 * 15 14 11 18 18 N 1.31627 * 119.99687 * 0.27616 * 17 15 14 19 19 Si 1.86796 * 120.00284 * 180.27638 * 17 15 14 20 20 H 1.48500 * 109.47236 * 59.99751 * 19 17 15 21 21 H 1.48508 * 109.47041 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46925 * 299.99635 * 19 17 15 23 23 N 1.34501 * 125.41752 * 180.31212 * 2 1 3 24 24 C 1.46496 * 126.47490 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.47264 * 90.02864 * 1 2 3 26 26 H 1.09003 * 109.47161 * 210.02386 * 1 2 3 27 27 H 1.08993 * 109.47312 * 330.02775 * 1 2 3 28 28 H 1.07997 * 126.10443 * 179.97438 * 4 3 2 29 29 H 0.97000 * 120.00063 * 354.61738 * 8 6 5 30 30 H 1.08993 * 109.47431 * 60.00142 * 9 8 6 31 31 H 1.09001 * 109.46698 * 300.00260 * 9 8 6 32 32 H 1.09001 * 109.47015 * 60.00082 * 10 9 8 33 33 H 1.08996 * 109.47154 * 299.99911 * 10 9 8 34 34 H 1.08996 * 109.47511 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47456 * 300.00016 * 13 11 10 36 36 H 1.09001 * 109.47401 * 60.00167 * 13 11 10 37 37 H 0.96992 * 120.00196 * 335.00241 * 14 11 10 38 38 H 0.96995 * 119.99708 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47056 * 272.73147 * 24 23 2 40 40 H 1.09003 * 109.47004 * 32.73129 * 24 23 2 41 41 H 1.08995 * 109.47422 * 152.72804 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5976 -0.6608 0.0004 6 6 4.8029 -1.4982 0.0013 7 8 4.7035 -2.7076 -0.0894 8 7 6.0197 -0.9278 0.1025 9 6 7.2145 -1.7670 0.2224 10 6 8.4551 -0.8770 0.3216 11 6 9.7028 -1.7535 0.4475 12 1 9.7380 -2.4570 -0.3844 13 6 10.9515 -0.8698 0.4212 14 7 9.6545 -2.4932 1.7110 15 6 10.3336 -3.6755 1.8386 16 1 10.9045 -4.0628 1.0076 17 6 10.2925 -4.3736 3.0377 18 7 9.5964 -3.9019 4.0503 19 14 11.2251 -5.9825 3.2142 20 1 12.6731 -5.7427 2.9881 21 1 11.0213 -6.5253 4.5814 22 1 10.7228 -6.9581 2.2137 23 7 2.2865 -1.0961 -0.0060 24 6 1.8312 -2.4885 -0.0141 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.3977 1.3722 0.0003 29 1 6.1044 0.0385 0.0960 30 1 7.2970 -2.4092 -0.6544 31 1 7.1372 -2.3832 1.1182 32 1 8.3724 -0.2350 1.1987 33 1 8.5325 -0.2605 -0.5739 34 1 11.8405 -1.4942 0.5104 35 1 10.9875 -0.3194 -0.5189 36 1 10.9164 -0.1662 1.2530 37 1 9.1416 -2.1456 2.4572 38 1 9.5680 -4.3895 4.8883 39 1 1.6714 -2.8244 1.0105 40 1 0.8968 -2.5619 -0.5705 41 1 2.5866 -3.1150 -0.4882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266169654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:56 Heat of formation + Delta-G solvation = -0.450658 kcal Electronic energy + Delta-G solvation = -21479.839285 eV Core-core repulsion = 18201.756763 eV Total energy + Delta-G solvation = -3278.082522 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31163 -40.44749 -38.13116 -36.05157 -35.02137 -34.15609 -32.92806 -31.12093 -29.88605 -28.46987 -27.65509 -25.84783 -24.54713 -23.39828 -21.81651 -21.25179 -20.74449 -19.30905 -18.76224 -17.29699 -17.28538 -16.87242 -16.68647 -16.24449 -15.56737 -15.42864 -15.28803 -14.88983 -14.49012 -14.25036 -14.22226 -14.07259 -13.73099 -13.55220 -13.30815 -13.23267 -13.16502 -12.79013 -12.62291 -12.32304 -12.24376 -12.12369 -11.69935 -11.59486 -11.42646 -10.98512 -10.91213 -10.78395 -10.22753 -9.50025 -8.97059 -7.91910 -5.18620 0.22020 1.42463 1.46169 1.48909 1.54443 1.72584 2.22995 2.30495 2.57661 3.38766 3.42162 3.63323 3.84850 3.92403 3.93555 4.00746 4.22541 4.27410 4.34995 4.38324 4.57263 4.67401 4.68423 4.72137 4.77619 4.88599 5.03127 5.03808 5.10361 5.14369 5.22061 5.36498 5.41335 5.45593 5.54829 5.63196 6.04021 6.31074 6.43319 6.84181 7.10736 7.37066 8.15357 8.36502 9.31457 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.003370 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.577893 B = 8305.385067 C = 9092.490178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.229 3.771 3 N -0.524 5.524 4 C 0.047 3.953 5 C -0.115 4.115 6 C 0.587 3.413 7 O -0.587 6.587 8 N -0.698 5.698 9 C 0.137 3.863 10 C -0.117 4.117 11 C 0.164 3.836 12 H 0.044 0.956 13 C -0.154 4.154 14 N -0.735 5.735 15 C -0.233 4.233 16 H 0.074 0.926 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.966 3.034 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.281 1.281 23 N -0.432 5.432 24 C 0.061 3.939 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.205 0.795 29 H 0.417 0.583 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.372 0.628 38 H 0.248 0.752 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 10.965 -11.377 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 N -0.243 5.243 4 C -0.108 4.108 5 C -0.232 4.232 6 C 0.375 3.625 7 O -0.469 6.469 8 N -0.350 5.350 9 C 0.014 3.986 10 C -0.155 4.155 11 C 0.056 3.944 12 H 0.062 0.938 13 C -0.213 4.213 14 N -0.376 5.376 15 C -0.365 4.365 16 H 0.092 0.908 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.796 3.204 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.208 1.208 23 N -0.113 5.113 24 C -0.080 4.080 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.222 0.778 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.204 0.796 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.298 10.556 -11.486 23.294 hybrid contribution 1.009 -1.542 0.861 2.034 sum -16.289 9.014 -10.626 21.436 Atomic orbital electron populations 1.20511 0.81153 1.05810 1.05415 1.24340 0.97619 0.80480 1.00824 1.70152 1.02540 1.29036 1.22581 1.23100 0.95990 0.90966 1.00747 1.20683 0.85525 0.95285 1.21670 1.17110 0.83131 0.86306 0.75999 1.90777 1.87378 1.16082 1.52651 1.45507 1.04727 1.11323 1.73420 1.21162 0.83393 0.93375 1.00701 1.21934 0.91845 0.97698 1.04031 1.20453 0.93404 0.92373 0.88169 0.93840 1.22264 0.98363 0.99371 1.01347 1.42657 1.59341 1.23574 1.12056 1.19566 1.21865 0.98125 0.96956 0.90819 1.25484 1.02575 1.02557 0.96406 1.69805 1.47331 1.41419 1.03605 0.85309 0.78687 0.80235 0.76156 1.20341 1.22452 1.20776 1.45319 1.04847 1.09398 1.51720 1.22437 1.03096 0.77535 1.04937 0.87904 0.88443 0.88043 0.77792 0.74487 0.92608 0.94243 0.90799 0.87437 0.94899 0.90538 0.93615 0.79635 0.94310 0.89681 0.85766 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.98 71.24 0.71 0.02 16 2 C 0.23 4.66 7.88 138.20 1.09 5.75 16 3 N -0.52 -12.63 11.20 -187.39 -2.10 -14.72 16 4 C 0.05 1.07 11.37 84.10 0.96 2.03 16 5 C -0.12 -3.09 6.91 40.01 0.28 -2.81 16 6 C 0.59 18.54 7.78 86.47 0.67 19.21 16 7 O -0.59 -23.20 14.82 -4.29 -0.06 -23.27 16 8 N -0.70 -18.74 5.54 -467.01 -2.59 -21.33 16 9 C 0.14 4.51 5.57 86.38 0.48 4.99 16 10 C -0.12 -3.26 4.87 30.60 0.15 -3.11 16 11 C 0.16 6.03 2.89 44.99 0.13 6.16 16 12 H 0.04 1.65 8.08 -2.38 -0.02 1.63 16 13 C -0.15 -4.97 9.49 71.98 0.68 -4.29 16 14 N -0.74 -36.20 4.57 -322.94 -1.48 -37.68 16 15 C -0.23 -12.94 9.93 84.03 0.83 -12.11 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 18 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 19 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 N -0.43 -10.02 3.17 -524.95 -1.67 -11.69 16 24 C 0.06 1.12 10.34 127.77 1.32 2.44 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.57 7.75 -2.39 -0.02 0.55 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.21 3.19 7.46 -2.91 -0.02 3.17 16 29 H 0.42 7.85 7.42 -92.71 -0.69 7.17 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.68 7.75 -2.39 -0.02 1.66 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.37 19.82 7.80 -92.71 -0.72 19.10 16 38 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.12 1.22 7.77 -2.39 -0.02 1.20 16 41 H 0.08 2.02 6.27 -2.39 -0.01 2.01 16 Total: -1.00 -77.87 345.46 1.82 -76.06 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.37 Total: 29.35 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 7.77 Total: 14.19 kcal Atomic # 7 Polarization: -137.97 SS G_CDS: -7.55 Total: -145.52 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.87 1.82 -76.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266169654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.607 kcal (2) G-P(sol) polarization free energy of solvation -77.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds