Wall clock time and date at job start Tue Mar 31 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47588 * 2 1 4 4 C 1.34667 * 126.59060 * 274.68932 * 3 2 1 5 5 N 1.34133 * 108.01944 * 179.87206 * 4 3 2 6 6 C 1.30495 * 109.25680 * 0.39454 * 5 4 3 7 7 C 1.50703 * 125.64872 * 179.77698 * 6 5 4 8 8 C 1.50698 * 109.46871 * 304.97433 * 7 6 5 9 9 O 1.21285 * 120.00453 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99610 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99776 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47131 * 179.97438 * 11 10 8 13 13 N 1.46500 * 109.47501 * 180.02562 * 12 11 10 14 14 C 1.46498 * 119.99960 * 89.99955 * 13 12 11 15 15 C 1.36937 * 119.99764 * 270.00581 * 13 12 11 16 16 H 1.08003 * 119.99829 * 142.04278 * 15 13 12 17 17 C 1.38813 * 120.00135 * 322.03946 * 15 13 12 18 18 N 1.31626 * 119.99983 * 157.02506 * 17 15 13 19 19 Si 1.86799 * 119.99810 * 337.02456 * 17 15 13 20 20 H 1.48495 * 109.47215 * 95.68383 * 19 17 15 21 21 H 1.48500 * 109.46766 * 215.68214 * 19 17 15 22 22 H 1.48502 * 109.47330 * 335.67947 * 19 17 15 23 23 N 1.35047 * 108.70173 * 359.75553 * 6 5 4 24 24 H 0.97000 * 126.39901 * 179.97438 * 23 6 5 25 25 H 1.08999 * 109.46966 * 300.00646 * 1 2 3 26 26 H 1.08998 * 109.46598 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46532 * 120.00053 * 2 1 3 29 29 H 1.08999 * 109.46966 * 239.99353 * 2 1 3 30 30 H 1.08003 * 125.98989 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.47003 * 64.97765 * 7 6 5 32 32 H 1.08996 * 109.46625 * 184.97808 * 7 6 5 33 33 H 0.97001 * 120.00276 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.47392 * 299.99684 * 11 10 8 35 35 H 1.09005 * 109.47168 * 60.00516 * 11 10 8 36 36 H 1.09004 * 109.47411 * 300.00518 * 12 11 10 37 37 H 1.09000 * 109.46834 * 59.99980 * 12 11 10 38 38 H 1.09002 * 109.46853 * 85.65672 * 14 13 12 39 39 H 1.08996 * 109.46734 * 205.65435 * 14 13 12 40 40 H 1.08996 * 109.47108 * 325.65599 * 14 13 12 41 41 H 0.96998 * 119.99835 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2168 2.2070 -1.0776 5 7 2.6709 3.3951 -0.6517 6 6 2.7830 3.3720 0.6483 7 6 3.2655 4.5114 1.5086 8 6 4.6206 4.9639 1.0293 9 8 5.1431 4.4156 0.0820 10 7 5.2520 5.9780 1.6533 11 6 6.5692 6.4183 1.1869 12 6 7.0590 7.5750 2.0605 13 7 8.3759 8.0158 1.5938 14 6 8.4792 9.0640 0.5756 15 6 9.5103 7.4478 2.1094 16 1 10.3579 7.2566 1.4679 17 6 9.5709 7.1180 3.4564 18 7 10.4163 6.1984 3.8714 19 14 8.4527 7.9793 4.6800 20 1 7.2412 7.1521 4.9107 21 1 9.1754 8.1675 5.9636 22 1 8.0526 9.3029 4.1385 23 7 2.3947 2.1581 1.0949 24 1 2.3763 1.8637 2.0190 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.0292 1.9304 -2.1047 31 1 2.5610 5.3405 1.4420 32 1 3.3387 4.1790 2.5440 33 1 4.8340 6.4169 2.4106 34 1 7.2738 5.5893 1.2527 35 1 6.4955 6.7513 0.1516 36 1 6.3544 8.4040 1.9944 37 1 7.1326 7.2425 3.0959 38 1 8.4494 10.0418 1.0565 39 1 9.4189 8.9536 0.0346 40 1 7.6460 8.9765 -0.1217 41 1 10.4588 5.9682 4.8127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267200243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:30 Heat of formation + Delta-G solvation = 9.954455 kcal Electronic energy + Delta-G solvation = -21351.533000 eV Core-core repulsion = 18073.901678 eV Total energy + Delta-G solvation = -3277.631322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.09721 -40.55926 -38.07498 -35.58766 -35.08283 -33.76522 -33.47080 -32.37264 -30.14541 -28.14595 -27.79262 -24.91453 -24.18285 -22.73951 -22.30438 -21.83926 -21.00316 -18.90950 -18.40328 -17.91743 -17.47910 -16.87688 -16.51094 -16.01547 -15.72598 -15.38068 -15.28024 -14.97073 -14.87579 -14.47812 -14.40243 -14.19664 -13.94300 -13.76874 -13.30226 -13.22843 -13.05563 -12.73062 -12.45620 -12.44309 -12.32481 -12.02450 -11.91287 -11.55920 -10.99728 -10.96676 -10.79232 -10.66484 -10.05531 -9.18479 -8.84012 -8.21943 -5.63436 1.00534 1.29209 1.44660 1.56933 1.69138 1.89219 2.18778 2.41309 2.46210 3.06064 3.33927 3.48759 3.89458 4.00073 4.06385 4.12155 4.16573 4.23784 4.38716 4.45260 4.52170 4.56583 4.70652 4.71368 4.76462 4.91649 4.95618 5.00213 5.06606 5.11012 5.15842 5.35232 5.40577 5.45964 5.80953 5.91034 6.14142 6.48490 6.63689 6.94059 7.18694 7.33705 7.57876 7.98703 8.97910 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.003181 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.816969 B = 8800.137088 C = 9127.364268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C -0.009 4.009 4 C -0.061 4.061 5 N -0.510 5.510 6 C 0.203 3.797 7 C -0.044 4.044 8 C 0.508 3.492 9 O -0.576 6.576 10 N -0.715 5.715 11 C 0.119 3.881 12 C 0.130 3.870 13 N -0.623 5.623 14 C 0.121 3.879 15 C -0.273 4.273 16 H 0.033 0.967 17 C -0.025 4.025 18 N -0.949 5.949 19 Si 0.953 3.047 20 H -0.257 1.257 21 H -0.309 1.309 22 H -0.254 1.254 23 N -0.552 5.552 24 H 0.432 0.568 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.173 0.827 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.417 0.583 34 H 0.026 0.974 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.986 -7.600 -0.622 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.209 4.209 5 N -0.229 5.229 6 C -0.062 4.062 7 C -0.085 4.085 8 C 0.294 3.706 9 O -0.454 6.454 10 N -0.369 5.369 11 C -0.008 4.008 12 C 0.004 3.996 13 N -0.347 5.347 14 C -0.023 4.023 15 C -0.403 4.403 16 H 0.051 0.949 17 C -0.222 4.222 18 N -0.592 5.592 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.237 1.237 22 H -0.178 1.178 23 N -0.157 5.157 24 H 0.273 0.727 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.190 0.810 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.254 0.746 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.334 -7.345 -1.750 25.479 hybrid contribution 0.222 -0.470 1.514 1.600 sum -24.113 -7.815 -0.237 25.349 Atomic orbital electron populations 1.21734 0.93418 1.02855 1.01985 1.20122 0.96706 0.86892 1.04590 1.21698 1.06980 0.97294 0.86596 1.22428 1.07710 0.90813 0.99950 1.70149 1.17975 1.24968 1.09800 1.22578 1.04454 0.88260 0.90890 1.20057 0.93204 0.95804 0.99463 1.20952 0.87737 0.79412 0.82516 1.90758 1.68449 1.56642 1.29557 1.45817 1.19644 1.35914 1.35485 1.21721 0.82827 0.97532 0.98695 1.21416 0.86970 0.95143 0.96082 1.44066 1.01152 1.41942 1.47578 1.21231 1.00193 0.89978 0.90880 1.18667 0.94431 1.35356 0.91804 0.94925 1.26252 0.99327 0.97462 0.99123 1.70050 1.42149 1.30856 1.16169 0.85716 0.78403 0.80699 0.77238 1.18305 1.23722 1.17822 1.43040 1.50585 1.11552 1.10526 0.72680 0.93018 0.92789 0.90340 0.89725 0.88710 0.80962 0.83304 0.83357 0.74630 0.95533 0.92907 0.89553 0.93558 0.95628 0.94379 0.92431 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.90 71.98 0.71 -0.64 16 2 C -0.04 -0.53 6.49 29.85 0.19 -0.33 16 3 C -0.01 -0.18 6.49 40.95 0.27 0.09 16 4 C -0.06 -1.64 11.79 83.52 0.98 -0.66 16 5 N -0.51 -16.61 10.58 -188.12 -1.99 -18.60 16 6 C 0.20 5.15 6.96 138.13 0.96 6.11 16 7 C -0.04 -0.85 6.33 29.10 0.18 -0.66 16 8 C 0.51 15.83 7.82 87.66 0.69 16.51 16 9 O -0.58 -25.07 15.55 -3.04 -0.05 -25.12 16 10 N -0.71 -20.81 5.56 -463.05 -2.57 -23.39 16 11 C 0.12 4.63 6.00 86.38 0.52 5.15 16 12 C 0.13 5.07 4.65 86.38 0.40 5.47 16 13 N -0.62 -29.17 2.47 -726.94 -1.79 -30.96 16 14 C 0.12 4.68 10.70 127.77 1.37 6.04 16 15 C -0.27 -15.70 9.88 84.03 0.83 -14.87 16 16 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 17 C -0.03 -1.45 5.29 84.86 0.45 -1.00 16 18 N -0.95 -59.39 13.97 21.65 0.30 -59.09 16 19 Si 0.95 43.63 25.10 68.60 1.72 45.35 16 20 H -0.26 -10.47 6.68 99.48 0.66 -9.80 16 21 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 23 N -0.55 -10.37 6.15 -174.60 -1.07 -11.45 16 24 H 0.43 4.72 8.96 -92.71 -0.83 3.89 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.42 8.46 8.47 -92.71 -0.79 7.67 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.09 2.69 8.07 -2.38 -0.02 2.67 16 37 H 0.05 1.92 3.38 -2.39 -0.01 1.91 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16 40 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 41 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -86.11 343.40 1.48 -84.63 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.62 Total: 17.40 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 7.55 Total: 21.22 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -7.13 Total: -143.47 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.72 Total: 45.35 kcal Total: -86.11 1.48 -84.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267200243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.580 kcal (2) G-P(sol) polarization free energy of solvation -86.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds