Wall clock time and date at job start Tue Mar 31 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.50700 * 109.47232 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.99353 * 89.97121 * 4 3 2 6 6 N 1.39926 * 108.89858 * 179.97438 * 5 4 3 7 7 H 0.97004 * 125.75253 * 179.97438 * 6 5 4 8 8 C 1.34261 * 108.49562 * 0.02562 * 6 5 4 9 9 C 1.38047 * 107.41381 * 0.25863 * 8 6 5 10 10 C 1.47429 * 126.41417 * 179.72058 * 9 8 6 11 11 O 1.21605 * 119.99722 * 142.23667 * 10 9 8 12 12 N 1.34771 * 120.00057 * 322.23998 * 10 9 8 13 13 C 1.46503 * 120.00015 * 4.67043 * 12 10 9 14 14 C 1.46499 * 120.00306 * 184.66505 * 12 10 9 15 15 C 1.53007 * 109.46911 * 89.99924 * 14 12 10 16 16 N 1.46496 * 109.46989 * 180.02562 * 15 14 12 17 17 C 1.36945 * 119.99997 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99370 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00153 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99928 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99882 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47002 * 90.00107 * 21 19 17 23 23 H 1.48502 * 109.46833 * 209.99834 * 21 19 17 24 24 H 1.48498 * 109.47184 * 330.00086 * 21 19 17 25 25 H 1.09003 * 109.46830 * 60.00633 * 1 2 3 26 26 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47398 * 300.00381 * 1 2 3 28 28 H 1.08999 * 109.47398 * 239.99619 * 2 1 3 29 29 H 1.08998 * 109.47169 * 119.99730 * 2 1 3 30 30 H 1.08999 * 109.47247 * 59.99526 * 3 2 1 31 31 H 1.09003 * 109.46704 * 299.99445 * 3 2 1 32 32 H 1.07992 * 126.29446 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47497 * 84.75811 * 13 12 10 34 34 H 1.09005 * 109.46855 * 204.76326 * 13 12 10 35 35 H 1.08998 * 109.46976 * 324.75371 * 13 12 10 36 36 H 1.08991 * 109.47722 * 210.00087 * 14 12 10 37 37 H 1.09000 * 109.46980 * 330.00339 * 14 12 10 38 38 H 1.09001 * 109.46935 * 300.00467 * 15 14 12 39 39 H 1.09000 * 109.46960 * 60.00403 * 15 14 12 40 40 H 0.97005 * 120.00294 * 0.02562 * 16 15 14 41 41 H 0.97001 * 120.00127 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3132 1.4421 -1.0564 6 7 5.6508 1.4428 -0.6456 7 1 6.4237 1.4424 -1.2318 8 6 5.6842 1.4431 0.6966 9 6 4.3777 1.4366 1.1423 10 6 3.9326 1.4287 2.5478 11 8 2.9531 2.0688 2.8789 12 7 4.6112 0.7121 3.4656 13 6 5.8486 0.0241 3.0891 14 6 4.1116 0.6213 4.8397 15 6 3.1773 -0.5840 4.9641 16 7 2.6772 -0.6745 6.3381 17 6 1.8189 -1.6821 6.6894 18 1 1.5104 -2.4097 5.9533 19 6 1.3447 -1.7676 7.9911 20 7 0.5193 -2.7357 8.3286 21 14 1.8779 -0.5085 9.2640 22 1 0.9295 0.6342 9.2574 23 1 1.8858 -1.1375 10.6092 24 1 3.2421 -0.0215 8.9372 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 6.5702 1.4441 1.3140 33 1 6.6861 0.7182 3.1591 34 1 6.0161 -0.8166 3.7623 35 1 5.7642 -0.3413 2.0656 36 1 4.9512 0.5023 5.5245 37 1 3.5658 1.5313 5.0888 38 1 2.3377 -0.4649 4.2792 39 1 3.7231 -1.4940 4.7150 40 1 2.9541 -0.0207 6.9991 41 1 0.1882 -2.7956 9.2383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267393531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:25 Heat of formation + Delta-G solvation = 20.556854 kcal Electronic energy + Delta-G solvation = -22050.208366 eV Core-core repulsion = 18773.036798 eV Total energy + Delta-G solvation = -3277.171568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51318 -40.36998 -37.45150 -36.36981 -35.96156 -33.70940 -32.59209 -31.82664 -29.78874 -28.13245 -27.60150 -25.68378 -23.73667 -23.06708 -22.70680 -21.26864 -20.35377 -19.67711 -18.71660 -17.67539 -17.08550 -16.64347 -16.30791 -16.11692 -15.78334 -15.40157 -15.33012 -15.20757 -14.80835 -14.57515 -14.31980 -14.06116 -13.70349 -13.45340 -13.12012 -12.98263 -12.88264 -12.76386 -12.48379 -12.34985 -12.22232 -12.08763 -11.94220 -11.82094 -11.64027 -11.00969 -10.89694 -10.50231 -9.81991 -9.60710 -9.35555 -8.04150 -5.39955 0.62627 1.09372 1.38291 1.44257 1.50526 1.74494 1.99629 2.32821 2.48665 3.27098 3.40188 3.69848 3.73649 3.93686 4.06545 4.13408 4.19994 4.20996 4.34701 4.35583 4.41362 4.55890 4.59086 4.73803 4.79529 4.81297 4.93033 4.94959 5.02417 5.08620 5.10124 5.26040 5.36073 5.40553 5.54979 5.72741 6.18676 6.29375 6.42047 6.57939 7.04560 7.24534 7.77832 7.99663 9.17295 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.004230 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.628613 B = 6617.409374 C = 7513.201654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.049 4.049 4 C 0.120 3.880 5 N -0.318 5.318 6 N -0.445 5.445 7 H 0.462 0.538 8 C 0.134 3.866 9 C -0.314 4.314 10 C 0.587 3.413 11 O -0.582 6.582 12 N -0.606 5.606 13 C 0.064 3.936 14 C 0.119 3.881 15 C 0.150 3.850 16 N -0.754 5.754 17 C -0.242 4.242 18 H 0.051 0.949 19 C -0.061 4.061 20 N -0.983 5.983 21 Si 0.959 3.041 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.243 1.243 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.001 0.999 39 H 0.032 0.968 40 H 0.369 0.631 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.544 9.876 -19.579 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.088 4.088 4 C -0.047 4.047 5 N -0.141 5.141 6 N -0.152 5.152 7 H 0.311 0.689 8 C -0.019 4.019 9 C -0.329 4.329 10 C 0.376 3.624 11 O -0.463 6.463 12 N -0.338 5.338 13 C -0.078 4.078 14 C -0.005 4.005 15 C 0.022 3.978 16 N -0.401 5.401 17 C -0.372 4.372 18 H 0.069 0.931 19 C -0.253 4.253 20 N -0.633 5.633 21 Si 0.785 3.215 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.167 1.167 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.251 0.749 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.019 0.981 39 H 0.050 0.950 40 H 0.203 0.797 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.991 10.016 -20.756 28.633 hybrid contribution -0.059 0.206 1.665 1.679 sum 16.933 10.221 -19.091 27.489 Atomic orbital electron populations 1.21746 0.94530 1.02265 1.02176 1.21336 0.96802 0.94992 1.01377 1.20174 0.86225 0.98558 1.03833 1.22430 0.97108 0.95874 0.89322 1.77080 0.87761 1.26965 1.22255 1.46122 1.07305 1.55838 1.05904 0.68893 1.23832 0.98677 0.93906 0.85530 1.20165 0.94257 1.25513 0.93005 1.17762 0.81907 0.77986 0.84709 1.90750 1.29111 1.45022 1.81368 1.47658 1.26407 1.50354 1.09428 1.22361 0.84543 0.98183 1.02664 1.21430 0.98412 0.97690 0.82977 1.20961 0.94880 0.96937 0.84989 1.42502 1.56263 1.33078 1.08226 1.18976 1.18737 1.04323 0.95208 0.93117 1.25563 0.99548 1.00665 0.99519 1.69893 1.38011 1.35948 1.19462 0.85360 0.79578 0.78481 0.78101 1.20748 1.21717 1.16708 0.90864 0.92123 0.93723 0.91040 0.94181 0.90616 0.89024 0.74928 0.88736 0.90027 0.89940 0.87469 0.91321 0.98126 0.95010 0.79748 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.91 71.98 0.71 -2.78 16 2 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 3 C -0.05 -1.26 5.59 29.85 0.17 -1.10 16 4 C 0.12 3.03 6.51 43.52 0.28 3.31 16 5 N -0.32 -6.86 12.63 -46.67 -0.59 -7.45 16 6 N -0.45 -5.37 7.29 -56.32 -0.41 -5.78 16 7 H 0.46 1.62 8.96 -213.43 -1.91 -0.29 16 8 C 0.13 1.64 9.74 84.28 0.82 2.46 16 9 C -0.31 -7.34 5.37 -20.15 -0.11 -7.45 16 10 C 0.59 17.62 7.47 86.67 0.65 18.27 16 11 O -0.58 -23.08 15.19 -4.05 -0.06 -23.14 16 12 N -0.61 -15.28 2.87 -850.66 -2.44 -17.72 16 13 C 0.06 0.86 9.03 127.77 1.15 2.02 16 14 C 0.12 3.66 5.53 86.38 0.48 4.14 16 15 C 0.15 6.13 6.58 86.38 0.57 6.70 16 16 N -0.75 -36.96 5.41 -343.44 -1.86 -38.82 16 17 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 18 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 19 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 20 N -0.98 -64.39 13.97 21.65 0.30 -64.09 16 21 Si 0.96 45.96 27.74 68.60 1.90 47.86 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.24 -10.20 6.52 99.48 0.65 -9.55 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 2.36 6.73 -2.39 -0.02 2.34 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.23 0.49 6.29 -2.91 -0.02 0.47 16 33 H 0.09 0.55 7.33 -2.39 -0.02 0.53 16 34 H 0.08 1.11 8.03 -2.38 -0.02 1.09 16 35 H 0.08 0.95 5.90 -2.39 -0.01 0.93 16 36 H 0.11 2.66 8.07 -2.39 -0.02 2.64 16 37 H 0.07 2.39 7.36 -2.39 -0.02 2.38 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.37 16.79 5.53 -92.70 -0.51 16.28 16 41 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -85.01 339.18 1.66 -83.35 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -1.44 Total: 19.53 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 6.25 Total: 6.25 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -5.00 Total: -133.86 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.14 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -85.01 1.66 -83.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267393531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.909 kcal (2) G-P(sol) polarization free energy of solvation -85.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds