Wall clock time and date at job start Tue Mar 31 2020 01:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30855 * 125.41867 * 2 1 4 4 C 1.33318 * 109.68737 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78638 * 359.97438 * 4 3 2 6 6 C 1.46760 * 126.84844 * 179.97438 * 5 4 3 7 7 O 1.21680 * 120.00063 * 186.97892 * 6 5 4 8 8 N 1.34773 * 119.99954 * 6.97869 * 6 5 4 9 9 C 1.46498 * 120.00040 * 5.61530 * 8 6 5 10 10 C 1.46500 * 120.00335 * 185.61285 * 8 6 5 11 11 H 1.09002 * 109.46916 * 0.02562 * 10 8 6 12 12 C 1.53000 * 109.47560 * 240.00354 * 10 8 6 13 13 C 1.52997 * 109.47203 * 119.99765 * 10 8 6 14 14 N 1.46498 * 109.47349 * 305.00438 * 13 10 8 15 15 C 1.36942 * 120.00041 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99789 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47125 * 60.00100 * 19 17 15 21 21 H 1.48498 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46918 * 300.00413 * 19 17 15 23 23 N 1.34498 * 125.41834 * 180.23676 * 2 1 3 24 24 C 1.46501 * 126.47284 * 0.04829 * 23 2 1 25 25 H 1.09000 * 109.46973 * 90.02127 * 1 2 3 26 26 H 1.08994 * 109.47053 * 210.01980 * 1 2 3 27 27 H 1.09001 * 109.46985 * 330.02515 * 1 2 3 28 28 H 1.07995 * 126.10968 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47223 * 275.72649 * 9 8 6 30 30 H 1.08997 * 109.47283 * 35.72265 * 9 8 6 31 31 H 1.09000 * 109.47268 * 155.72976 * 9 8 6 32 32 H 1.09001 * 109.46616 * 299.99851 * 12 10 8 33 33 H 1.09001 * 109.46987 * 59.99654 * 12 10 8 34 34 H 1.09003 * 109.47334 * 179.97438 * 12 10 8 35 35 H 1.09001 * 109.47333 * 65.00538 * 13 10 8 36 36 H 1.09003 * 109.47509 * 185.00088 * 13 10 8 37 37 H 0.96995 * 120.00436 * 0.02562 * 14 13 10 38 38 H 0.96999 * 119.99808 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.47043 * 264.48335 * 24 23 2 40 40 H 1.09000 * 109.46892 * 24.47826 * 24 23 2 41 41 H 1.08992 * 109.46982 * 144.48477 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5976 -0.6608 0.0015 6 6 4.8028 -1.4983 0.0019 7 8 4.7056 -2.7045 -0.1253 8 7 6.0173 -0.9313 0.1430 9 6 6.1284 0.5032 0.4190 10 6 7.2264 -1.7494 0.0206 11 1 6.9467 -2.7828 -0.1841 12 6 8.0205 -1.6847 1.3268 13 6 8.0878 -1.2179 -1.1268 14 7 7.2895 -1.1679 -2.3542 15 6 7.8529 -0.7215 -3.5197 16 1 8.8859 -0.4066 -3.5342 17 6 7.0966 -0.6746 -4.6828 18 7 5.8379 -1.0588 -4.6652 19 14 7.8653 -0.0662 -6.2729 20 1 9.0175 -0.9327 -6.6289 21 1 6.8554 -0.1131 -7.3606 22 1 8.3340 1.3314 -6.0931 23 7 2.2865 -1.0961 -0.0045 24 6 1.8311 -2.4885 -0.0113 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5135 28 1 4.3978 1.3722 0.0011 29 1 6.0813 1.0582 -0.5180 30 1 5.3083 0.8132 1.0665 31 1 7.0784 0.7055 0.9137 32 1 8.3003 -0.6512 1.5310 33 1 7.4068 -2.0634 2.1442 34 1 8.9199 -2.2938 1.2358 35 1 8.4411 -0.2162 -0.8822 36 1 8.9422 -1.8781 -1.2758 37 1 6.3616 -1.4504 -2.3411 38 1 5.3093 -1.0258 -5.4778 39 1 1.8114 -2.8693 1.0099 40 1 0.8295 -2.5411 -0.4380 41 1 2.5136 -3.0910 -0.6105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268079356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:47 Heat of formation + Delta-G solvation = 58.514230 kcal Electronic energy + Delta-G solvation = -22913.425915 eV Core-core repulsion = 19637.900302 eV Total energy + Delta-G solvation = -3275.525613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.12801 -39.37292 -36.39146 -34.36524 -33.67140 -32.46059 -31.28621 -30.06269 -27.58607 -27.20507 -26.38997 -25.59497 -22.99383 -22.29350 -20.97183 -19.67927 -19.03560 -17.05562 -16.85952 -16.51276 -16.03110 -15.64562 -14.84333 -14.64256 -14.15345 -13.69154 -13.47852 -13.42260 -13.35511 -13.22156 -12.85778 -12.71519 -12.40622 -12.38142 -12.28730 -12.24656 -11.93390 -11.51430 -11.21733 -10.81551 -10.75338 -10.45510 -10.14277 -10.05532 -9.67207 -9.55160 -9.46243 -8.84289 -8.34083 -8.18436 -6.87774 -5.70444 -3.00101 1.55393 2.60510 3.00230 3.43951 3.46676 3.50440 3.52007 3.64876 4.43471 4.60972 4.69098 4.85208 4.99518 5.22245 5.23785 5.32330 5.37023 5.41235 5.42942 5.56280 5.59813 5.62756 5.63368 5.73465 5.77321 5.95137 6.07560 6.10989 6.19013 6.29215 6.38167 6.48024 6.69392 6.73702 6.98605 7.19355 7.67624 7.72383 8.07642 8.46589 8.48932 9.58074 10.16518 10.51413 11.51475 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.006005 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.713612 B = 4661.934183 C = 5731.798264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.217 3.783 3 N -0.497 5.497 4 C 0.022 3.978 5 C -0.073 4.073 6 C 0.598 3.402 7 O -0.551 6.551 8 N -0.582 5.582 9 C 0.062 3.938 10 C 0.129 3.871 11 H 0.101 0.899 12 C -0.155 4.155 13 C 0.144 3.856 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 N -0.424 5.424 24 C 0.069 3.931 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.196 0.804 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.029 0.971 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 0.784 14.759 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.044 4.044 3 N -0.216 5.216 4 C -0.131 4.131 5 C -0.189 4.189 6 C 0.387 3.613 7 O -0.430 6.430 8 N -0.313 5.313 9 C -0.080 4.080 10 C 0.026 3.974 11 H 0.119 0.881 12 C -0.214 4.214 13 C 0.015 3.985 14 N -0.372 5.372 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 N -0.105 5.105 24 C -0.073 4.073 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.213 0.787 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.197 0.810 14.563 16.264 hybrid contribution 0.485 -0.515 -1.135 1.337 sum -6.713 0.295 13.428 15.015 Atomic orbital electron populations 1.20225 0.84744 1.03939 1.03775 1.23365 0.95761 0.81419 1.03905 1.70112 1.02396 1.28085 1.21013 1.23597 0.95304 0.92016 1.02174 1.20699 0.85141 0.94984 1.18098 1.16668 0.82013 0.86294 0.76314 1.90746 1.86398 1.14339 1.51526 1.47236 1.04852 1.09357 1.69861 1.22375 1.02830 0.81174 1.01670 1.21440 0.83974 0.96685 0.95291 0.88094 1.22071 1.00191 1.02265 0.96859 1.21024 0.93366 0.97624 0.86490 1.42286 1.12152 1.78729 1.04075 1.19153 0.95533 1.35646 0.86955 0.91298 1.24747 0.95968 1.02211 0.97899 1.69681 1.07034 1.53419 1.27563 0.86283 0.77896 0.78562 0.83515 1.21319 1.21768 1.21290 1.44990 1.05227 1.08133 1.52185 1.22215 1.01862 0.79171 1.04066 0.89866 0.90821 0.88981 0.78745 0.90999 0.90349 0.90732 0.92208 0.92583 0.91249 0.96039 0.95317 0.78073 0.93581 0.90563 0.89642 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 9.92 36.01 0.36 -0.29 16 2 C 0.22 3.21 7.88 -155.61 -1.23 1.98 16 3 N -0.50 -8.41 11.20 -10.58 -0.12 -8.53 16 4 C 0.02 0.38 9.80 -17.48 -0.17 0.21 16 5 C -0.07 -1.31 6.75 -82.14 -0.55 -1.86 16 6 C 0.60 11.55 7.34 -12.82 -0.09 11.45 16 7 O -0.55 -11.83 14.33 5.21 0.07 -11.76 16 8 N -0.58 -10.01 2.24 -175.45 -0.39 -10.40 16 9 C 0.06 0.87 7.79 59.85 0.47 1.33 16 10 C 0.13 2.22 2.79 -67.93 -0.19 2.03 16 11 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 12 C -0.16 -1.97 9.18 37.16 0.34 -1.63 16 13 C 0.14 2.90 5.55 -4.04 -0.02 2.87 16 14 N -0.73 -18.99 5.43 -59.91 -0.33 -19.32 16 15 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -29.16 13.06 55.49 0.72 -28.44 16 19 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 N -0.42 -6.68 3.17 -117.27 -0.37 -7.06 16 24 C 0.07 0.86 10.30 59.85 0.62 1.48 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.20 2.89 4.41 -52.49 -0.23 2.66 16 29 H 0.07 1.13 7.42 -51.93 -0.39 0.75 16 30 H 0.08 0.95 5.28 -51.93 -0.27 0.68 16 31 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.06 0.68 6.67 -51.93 -0.35 0.33 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.39 10.99 7.06 -40.82 -0.29 10.70 16 38 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.78 7.38 -51.93 -0.38 0.40 16 41 H 0.11 1.60 6.68 -51.93 -0.35 1.25 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -36.19 331.75 -6.99 -43.18 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.83 Total: 9.35 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -0.72 Total: 10.07 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -0.49 Total: -73.75 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.19 -6.99 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268079356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.694 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds