Wall clock time and date at job start Tue Mar 31 2020 01:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47226 * 2 1 4 4 N 1.30452 * 125.98543 * 269.97096 * 3 2 1 5 5 N 1.39934 * 108.89114 * 180.02562 * 4 3 2 6 6 H 0.97009 * 125.74491 * 179.97438 * 5 4 3 7 7 C 1.34254 * 108.49681 * 359.75325 * 5 4 3 8 8 C 1.38046 * 107.41467 * 0.39112 * 7 5 4 9 9 C 1.47427 * 126.41525 * 179.87014 * 8 7 5 10 10 O 1.21605 * 120.00383 * 179.97438 * 9 8 7 11 11 N 1.34784 * 119.99755 * 359.69211 * 9 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.47230 * 34.99566 * 12 11 9 14 14 C 1.53001 * 109.47277 * 275.00026 * 12 11 9 15 15 C 1.52990 * 109.47333 * 154.99849 * 12 11 9 16 16 C 1.53000 * 109.47144 * 295.00253 * 15 12 11 17 17 N 1.46506 * 109.46938 * 179.97438 * 16 15 12 18 18 C 1.36941 * 119.99451 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00600 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99520 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00214 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99962 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47220 * 89.99638 * 22 20 18 24 24 H 1.48495 * 109.47544 * 209.99975 * 22 20 18 25 25 H 1.48507 * 109.47189 * 330.00189 * 22 20 18 26 26 H 1.08995 * 109.47233 * 300.00588 * 1 2 3 27 27 H 1.09008 * 109.46950 * 60.00507 * 1 2 3 28 28 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46958 * 239.99317 * 2 1 3 30 30 H 1.09000 * 109.46460 * 119.99848 * 2 1 3 31 31 H 1.07997 * 126.29495 * 180.26678 * 7 5 4 32 32 H 0.96999 * 120.00044 * 359.97438 * 11 9 8 33 33 H 1.09005 * 109.47307 * 59.99945 * 14 12 11 34 34 H 1.09000 * 109.47576 * 179.97438 * 14 12 11 35 35 H 1.08995 * 109.46954 * 300.00156 * 14 12 11 36 36 H 1.09003 * 109.47330 * 55.00229 * 15 12 11 37 37 H 1.08999 * 109.47417 * 174.99813 * 15 12 11 38 38 H 1.08998 * 109.47016 * 299.99692 * 16 15 12 39 39 H 1.08993 * 109.47367 * 59.99969 * 16 15 12 40 40 H 0.96989 * 120.00320 * 359.97438 * 17 16 15 41 41 H 0.97000 * 120.00624 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2884 2.1433 -1.0556 5 7 2.7346 3.4042 -0.6442 6 1 2.9931 4.1328 -1.2302 7 6 2.7401 3.4371 0.6979 8 6 2.3092 2.2035 1.1432 9 6 2.1598 1.7836 2.5485 10 8 1.7679 0.6625 2.8097 11 7 2.4630 2.6405 3.5437 12 6 2.3140 2.2235 4.9401 13 1 2.5644 1.1666 5.0324 14 6 0.8677 2.4457 5.3873 15 6 3.2529 3.0490 5.8219 16 6 4.7047 2.7321 5.4575 17 7 5.6038 3.5231 6.3015 18 6 6.9603 3.4055 6.1551 19 1 7.3673 2.7300 5.4173 20 6 7.8122 4.1554 6.9544 21 7 7.3162 4.9790 7.8533 22 14 9.6625 3.9944 6.7553 23 1 10.1400 4.9796 5.7519 24 1 10.3252 4.2544 8.0586 25 1 9.9935 2.6212 6.2970 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.0304 4.2740 1.3156 32 1 2.7798 3.5333 3.3353 33 1 0.1987 1.8575 4.7591 34 1 0.7567 2.1350 6.4261 35 1 0.6172 3.5024 5.2950 36 1 3.0616 4.1102 5.6625 37 1 3.0789 2.8018 6.8691 38 1 4.8960 1.6710 5.6170 39 1 4.8788 2.9794 4.4104 40 1 5.2383 4.1301 6.9639 41 1 7.9115 5.5027 8.4121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272881336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:26 Heat of formation + Delta-G solvation = 26.847762 kcal Electronic energy + Delta-G solvation = -21651.888260 eV Core-core repulsion = 18374.989486 eV Total energy + Delta-G solvation = -3276.898774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = -0.96 seconds Orbital eigenvalues (eV) -41.59062 -39.26733 -36.42957 -34.52261 -34.12414 -32.16635 -31.03360 -30.45897 -29.62206 -27.85027 -24.28029 -24.07875 -23.39178 -21.67672 -20.93940 -20.19555 -19.61786 -18.52093 -17.09154 -16.53050 -15.82279 -15.39984 -14.91151 -14.73747 -14.29226 -14.14254 -13.99633 -13.74531 -13.39198 -13.32762 -13.07293 -12.81792 -12.44609 -12.33070 -11.83851 -11.61097 -11.30751 -11.18964 -11.01498 -10.90673 -10.78474 -10.61985 -10.54375 -10.04924 -9.76050 -9.70925 -9.66320 -9.08421 -8.89670 -8.77710 -6.93339 -5.78086 -3.06651 1.34401 2.03699 2.48954 3.35581 3.42170 3.47851 3.49671 3.50692 4.29431 4.45951 4.56769 4.90780 4.96527 5.14351 5.22255 5.30615 5.31985 5.39254 5.43096 5.53360 5.55119 5.74583 5.80259 5.87114 5.96479 6.05316 6.09104 6.13293 6.25684 6.31046 6.33125 6.37808 6.63167 6.82818 6.86602 6.89713 7.33398 7.68775 7.70063 8.41051 8.41239 9.52227 10.10293 10.44930 11.44864 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003627 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.132891 B = 7717.123314 C = 8527.049278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.138 3.862 4 N -0.302 5.302 5 N -0.462 5.462 6 H 0.444 0.556 7 C 0.106 3.894 8 C -0.284 4.284 9 C 0.594 3.406 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.147 3.853 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.135 4.135 16 C 0.154 3.846 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.397 0.603 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 -2.892 -14.747 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.030 4.030 4 N -0.124 5.124 5 N -0.166 5.166 6 H 0.288 0.712 7 C -0.047 4.047 8 C -0.299 4.299 9 C 0.381 3.619 10 O -0.421 6.421 11 N -0.369 5.369 12 C 0.043 3.957 13 H 0.108 0.892 14 C -0.219 4.219 15 C -0.173 4.173 16 C 0.026 3.974 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.204 0.796 32 H 0.231 0.769 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.964 -3.734 -15.863 22.125 hybrid contribution 1.408 1.317 0.655 2.036 sum -13.556 -2.417 -15.208 20.516 Atomic orbital electron populations 1.21608 0.94046 1.02019 1.01872 1.20131 0.96444 0.88082 1.04217 1.22474 0.94901 0.96936 0.88696 1.77154 1.21982 0.90740 1.22516 1.46100 1.51692 1.13350 1.05501 0.71186 1.23223 0.96761 0.98982 0.85689 1.20357 1.19394 0.95359 0.94833 1.17198 0.76719 0.84556 0.83409 1.90724 1.47270 1.19922 1.84217 1.45952 1.67989 1.16878 1.06087 1.20950 0.94745 1.00470 0.79575 0.89235 1.22161 0.96428 1.01709 1.01570 1.22062 0.95630 0.99810 0.99797 1.20635 0.87669 0.94854 0.94196 1.42376 1.02516 1.49833 1.43135 1.19239 0.82649 1.19515 1.15609 0.91252 1.24737 0.97994 0.99498 0.98802 1.69653 1.33770 1.29848 1.25047 0.86196 0.85590 0.77590 0.76870 1.21766 1.21733 1.20729 0.92175 0.93107 0.91932 0.90705 0.87903 0.79615 0.76933 0.92340 0.91620 0.92675 0.91484 0.90266 0.96362 0.96410 0.78340 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.90 37.16 0.37 -1.01 16 2 C -0.05 -0.56 5.97 -27.88 -0.17 -0.73 16 3 C 0.14 1.73 6.52 -82.02 -0.53 1.19 16 4 N -0.30 -3.60 12.63 33.89 0.43 -3.17 16 5 N -0.46 -4.02 7.29 30.85 0.22 -3.79 16 6 H 0.44 2.25 8.96 -182.72 -1.64 0.61 16 7 C 0.11 0.95 11.52 -16.56 -0.19 0.76 16 8 C -0.28 -3.45 6.13 -105.07 -0.64 -4.10 16 9 C 0.59 8.17 7.78 -12.52 -0.10 8.07 16 10 O -0.54 -8.89 14.58 5.27 0.08 -8.82 16 11 N -0.72 -8.78 4.52 -54.88 -0.25 -9.03 16 12 C 0.15 1.94 2.58 -67.94 -0.18 1.77 16 13 H 0.09 1.35 7.57 -51.93 -0.39 0.95 16 14 C -0.16 -1.83 9.48 37.16 0.35 -1.48 16 15 C -0.13 -2.02 4.87 -26.74 -0.13 -2.15 16 16 C 0.15 3.03 6.15 -4.04 -0.02 3.00 16 17 N -0.73 -18.41 5.60 -59.91 -0.34 -18.75 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.30 6.55 -51.93 -0.34 0.96 16 31 H 0.19 0.99 7.46 -52.49 -0.39 0.60 16 32 H 0.40 4.06 7.52 -40.82 -0.31 3.75 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 40 H 0.38 10.01 7.67 -40.82 -0.31 9.69 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -34.51 345.97 -7.99 -42.50 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.56 Total: 7.88 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.49 Total: -2.03 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.79 Total: -62.11 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.51 -7.99 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272881336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.348 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.95 seconds