Wall clock time and date at job start Tue Mar 31 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47026 * 2 1 4 4 C 1.39668 * 126.06762 * 125.28974 * 3 2 1 5 5 C 1.38406 * 105.35893 * 180.09161 * 4 3 2 6 6 C 1.47164 * 126.88436 * 179.91201 * 5 4 3 7 7 O 1.21632 * 119.99845 * 184.80828 * 6 5 4 8 8 N 1.34772 * 120.00090 * 4.81676 * 6 5 4 9 9 C 1.46504 * 120.00237 * 174.39303 * 8 6 5 10 10 H 1.09001 * 109.46829 * 34.99837 * 9 8 6 11 11 C 1.52998 * 109.47380 * 275.00112 * 9 8 6 12 12 C 1.53000 * 109.47172 * 154.99856 * 9 8 6 13 13 N 1.46503 * 109.47205 * 305.00539 * 12 9 8 14 14 C 1.36936 * 119.99731 * 180.02562 * 13 12 9 15 15 H 1.07994 * 120.00118 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00055 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47061 * 59.99865 * 18 16 14 20 20 H 1.48503 * 109.46956 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47274 * 299.99789 * 18 16 14 22 22 N 1.36599 * 106.23478 * 359.65211 * 5 4 3 23 23 C 1.46499 * 125.19461 * 180.20543 * 22 5 4 24 24 N 1.28450 * 109.61572 * 0.22640 * 22 5 4 25 25 H 1.09004 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46563 * 299.99775 * 1 2 3 27 27 H 1.08994 * 109.47443 * 59.99779 * 1 2 3 28 28 H 1.09010 * 109.46940 * 240.00376 * 2 1 3 29 29 H 1.08993 * 109.47957 * 120.00323 * 2 1 3 30 30 H 1.07999 * 127.32484 * 359.97375 * 4 3 2 31 31 H 0.97001 * 120.00089 * 354.40117 * 8 6 5 32 32 H 1.08997 * 109.46959 * 179.97438 * 11 9 8 33 33 H 1.08993 * 109.47074 * 299.99961 * 11 9 8 34 34 H 1.09008 * 109.47175 * 59.99698 * 11 9 8 35 35 H 1.08997 * 109.46706 * 65.00340 * 12 9 8 36 36 H 1.08995 * 109.47208 * 185.00086 * 12 9 8 37 37 H 0.96997 * 119.99746 * 359.97438 * 13 12 9 38 38 H 0.97001 * 119.99848 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.46922 * 90.50969 * 23 22 5 40 40 H 1.09001 * 109.46885 * 210.51016 * 23 22 5 41 41 H 1.08999 * 109.46816 * 330.50913 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9213 1.9787 0.9215 5 6 3.0846 3.2941 0.5232 6 6 3.9262 4.3144 1.1686 7 8 3.9104 5.4611 0.7632 8 7 4.7147 3.9782 2.2086 9 6 5.6429 4.9616 2.7721 10 1 5.1944 5.9539 2.7236 11 6 6.9459 4.9512 1.9703 12 6 5.9387 4.6064 4.2306 13 7 4.6798 4.4992 4.9722 14 6 4.6950 4.1883 6.3057 15 1 5.6350 4.0216 6.8106 16 6 3.5021 4.0873 7.0085 17 7 2.3566 4.2909 6.3932 18 14 3.5228 3.6624 8.8274 19 1 4.2895 4.6961 9.5684 20 1 2.1302 3.6167 9.3409 21 1 4.1653 2.3374 9.0189 22 7 2.3126 3.4541 -0.5923 23 6 2.1828 4.6960 -1.3584 24 7 1.7174 2.3494 -0.8668 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.3818 1.4885 1.7665 31 1 4.6678 3.0849 2.5839 32 1 7.6362 5.6832 2.3894 33 1 7.3944 3.9590 2.0188 34 1 6.7351 5.2043 0.9312 35 1 6.4672 3.6540 4.2725 36 1 6.5576 5.3853 4.6760 37 1 3.8356 4.6493 4.5187 38 1 1.5231 4.2207 6.8843 39 1 2.9385 4.7192 -2.1435 40 1 1.1907 4.7440 -1.8073 41 1 2.3228 5.5489 -0.6942 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274967927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:39 Heat of formation + Delta-G solvation = 18.880571 kcal Electronic energy + Delta-G solvation = -22032.686175 eV Core-core repulsion = 18755.441918 eV Total energy + Delta-G solvation = -3277.244257 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.57702 -40.66459 -37.74719 -35.81144 -35.41095 -33.54560 -32.57858 -32.08790 -30.88011 -27.86740 -27.41748 -24.99920 -24.31250 -24.25278 -22.49163 -21.52814 -20.44998 -19.20823 -18.64383 -17.54717 -17.37424 -16.88360 -16.51098 -15.96514 -15.47016 -15.35789 -15.15326 -14.99851 -14.87626 -14.64746 -14.02842 -13.80842 -13.64674 -13.55155 -13.43529 -13.07364 -13.00130 -12.73579 -12.64470 -12.35259 -12.19687 -12.17585 -11.89245 -11.70339 -11.51835 -11.18257 -10.92991 -10.33555 -9.99581 -9.85076 -9.00469 -7.92885 -5.22865 0.18497 1.37435 1.49784 1.52306 1.52578 1.58422 2.11754 2.21650 2.57719 3.41014 3.45077 3.50459 3.81412 3.95316 4.05340 4.25767 4.27289 4.30596 4.31769 4.47081 4.50257 4.54194 4.60117 4.74947 4.80824 4.85869 4.87306 4.94957 5.10478 5.10778 5.24245 5.30697 5.37534 5.47795 5.52171 5.53711 5.77039 6.27112 6.40002 6.99209 7.07897 7.34718 8.08378 8.31418 9.29891 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.004896 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.773684 B = 5717.398358 C = 7065.046165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 C 0.018 3.982 4 C -0.183 4.183 5 C -0.053 4.053 6 C 0.591 3.409 7 O -0.574 6.574 8 N -0.689 5.689 9 C 0.140 3.860 10 H 0.066 0.934 11 C -0.146 4.146 12 C 0.145 3.855 13 N -0.745 5.745 14 C -0.245 4.245 15 H 0.081 0.919 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.280 1.280 20 H -0.300 1.300 21 H -0.274 1.274 22 N -0.266 5.266 23 C 0.081 3.919 24 N -0.289 5.289 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.176 0.824 31 H 0.411 0.589 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -6.482 -15.357 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.212 4.212 5 C -0.182 4.182 6 C 0.378 3.622 7 O -0.455 6.455 8 N -0.339 5.339 9 C 0.036 3.964 10 H 0.084 0.916 11 C -0.205 4.205 12 C 0.018 3.982 13 N -0.388 5.388 14 C -0.376 4.376 15 H 0.099 0.901 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.206 1.206 20 H -0.227 1.227 21 H -0.200 1.200 22 N -0.053 5.053 23 C -0.058 4.058 24 N -0.123 5.123 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.193 0.807 31 H 0.248 0.752 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.205 0.795 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.919 -5.343 -16.519 17.605 hybrid contribution -0.235 -0.219 1.800 1.829 sum 2.684 -5.562 -14.719 15.962 Atomic orbital electron populations 1.21686 0.94498 1.02659 1.01270 1.20023 0.96237 0.86658 1.04464 1.22518 0.99609 0.97892 0.93773 1.22474 1.03448 0.92179 1.03112 1.21431 1.04322 0.96879 0.95533 1.17039 0.78845 0.86069 0.80291 1.90714 1.68146 1.20779 1.65838 1.45645 1.39255 1.17228 1.31792 1.21230 0.90370 0.92071 0.92727 0.91585 1.22021 0.95288 1.03764 0.99392 1.21158 0.88828 0.99413 0.88787 1.42555 1.03867 1.84954 1.07464 1.19611 0.92916 1.38196 0.86899 0.90111 1.25556 0.95106 1.03548 1.02342 1.69835 0.97128 1.58053 1.36988 0.85223 0.75910 0.78415 0.80247 1.20584 1.22660 1.19984 1.45779 1.30135 1.10083 1.19347 1.22492 1.05627 0.80839 0.96820 1.73041 1.19943 0.93046 1.26258 0.90076 0.94136 0.93154 0.89048 0.88422 0.80712 0.75231 0.89677 0.90739 0.92864 0.93872 0.93981 0.79495 0.94199 0.88403 0.87169 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.87 71.98 0.71 -2.04 16 2 C -0.04 -0.68 6.51 29.85 0.19 -0.49 16 3 C 0.02 0.49 6.49 43.05 0.28 0.77 16 4 C -0.18 -5.23 10.43 22.66 0.24 -5.00 16 5 C -0.05 -1.70 6.96 40.79 0.28 -1.42 16 6 C 0.59 20.37 7.76 86.59 0.67 21.04 16 7 O -0.57 -21.96 14.29 -4.13 -0.06 -22.02 16 8 N -0.69 -22.10 4.51 -446.05 -2.01 -24.11 16 9 C 0.14 4.49 2.78 44.99 0.13 4.61 16 10 H 0.07 2.45 7.50 -2.39 -0.02 2.44 16 11 C -0.15 -3.52 9.48 71.98 0.68 -2.83 16 12 C 0.14 5.27 5.82 86.38 0.50 5.78 16 13 N -0.75 -36.27 5.43 -343.46 -1.87 -38.14 16 14 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 17 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 18 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 N -0.27 -7.96 3.75 -356.03 -1.33 -9.29 16 23 C 0.08 1.91 10.89 127.77 1.39 3.30 16 24 N -0.29 -8.51 11.87 -47.49 -0.56 -9.08 16 25 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 30 H 0.18 4.29 7.58 -2.91 -0.02 4.27 16 31 H 0.41 12.50 7.63 -92.71 -0.71 11.79 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.37 19.97 7.33 -92.71 -0.68 19.29 16 38 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.63 6.19 -2.39 -0.01 2.62 16 Total: -1.00 -69.58 346.34 2.51 -67.07 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.35 Total: 39.34 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.39 Total: 7.77 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -5.49 Total: -139.43 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.58 2.51 -67.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274967927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.948 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds