Wall clock time and date at job start Tue Mar 31 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35364 * 127.24944 * 2 1 4 4 N 1.35042 * 107.23151 * 180.09449 * 3 2 1 5 5 C 1.46498 * 124.88412 * 179.89259 * 4 3 2 6 6 N 1.28463 * 110.22896 * 359.63036 * 4 3 2 7 7 C 1.31812 * 110.07620 * 0.22435 * 6 4 3 8 8 C 1.47712 * 126.52304 * 179.97438 * 7 6 4 9 9 O 1.21568 * 120.00402 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99409 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99526 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47061 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.46995 * 64.99792 * 12 11 10 14 14 C 1.52996 * 109.47170 * 184.99838 * 12 11 10 15 15 N 1.46496 * 109.47281 * 305.00109 * 12 11 10 16 16 C 1.46504 * 120.00020 * 300.00223 * 15 12 11 17 17 C 1.36936 * 120.00277 * 119.99364 * 15 12 11 18 18 H 1.08000 * 119.99814 * 23.12068 * 17 15 12 19 19 C 1.38814 * 120.00754 * 203.11544 * 17 15 12 20 20 N 1.31621 * 119.99269 * 11.70285 * 19 17 15 21 21 Si 1.86795 * 120.00317 * 191.70194 * 19 17 15 22 22 H 1.48495 * 109.47147 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47049 * 120.00183 * 21 19 17 24 24 H 1.48499 * 109.47059 * 239.99844 * 21 19 17 25 25 H 1.08999 * 109.47134 * 270.30886 * 1 2 3 26 26 H 1.08988 * 109.47615 * 30.31221 * 1 2 3 27 27 H 1.09002 * 109.47173 * 150.31315 * 1 2 3 28 28 H 1.08002 * 126.38534 * 359.96845 * 3 2 1 29 29 H 1.09001 * 109.47367 * 269.72230 * 5 4 3 30 30 H 1.08997 * 109.46929 * 29.71903 * 5 4 3 31 31 H 1.08999 * 109.47069 * 149.71969 * 5 4 3 32 32 H 0.96994 * 120.00429 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.47074 * 299.99688 * 11 10 8 34 34 H 1.09002 * 109.47334 * 59.99722 * 11 10 8 35 35 H 1.09003 * 109.47323 * 300.00247 * 14 12 11 36 36 H 1.09001 * 109.46911 * 60.00381 * 14 12 11 37 37 H 1.09005 * 109.47035 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47394 * 93.93147 * 16 15 12 39 39 H 1.09001 * 109.46817 * 213.92974 * 16 15 12 40 40 H 1.08998 * 109.46906 * 333.92675 * 16 15 12 41 41 H 0.97005 * 119.99537 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0021 5 6 4.7937 1.4576 -0.0051 6 7 3.5999 -0.6694 0.0044 7 6 2.3635 -1.1264 0.0062 8 6 1.9505 -2.5446 0.0126 9 8 0.7698 -2.8339 0.0142 10 7 2.8829 -3.5178 0.0169 11 6 2.4733 -4.9245 0.0238 12 6 3.7158 -5.8174 0.0269 13 1 4.2652 -5.6723 0.9571 14 6 3.2912 -7.2825 -0.0916 15 7 4.5736 -5.4644 -1.1070 16 6 4.0616 -5.5749 -2.4752 17 6 5.8540 -5.0309 -0.8880 18 1 6.3619 -5.2888 0.0295 19 6 6.4993 -4.2603 -1.8454 20 7 5.8176 -3.7531 -2.8506 21 14 8.3349 -3.9431 -1.7072 22 1 8.8641 -4.6187 -0.4954 23 1 9.0214 -4.4759 -2.9114 24 1 8.5783 -2.4817 -1.6047 25 1 -0.3633 0.0055 1.0276 26 1 -0.3634 0.8870 -0.5186 27 1 -0.3633 -0.8928 -0.5090 28 1 2.0220 2.1138 -0.0005 29 1 5.0919 1.6616 -1.0335 30 1 4.5788 2.3970 0.5040 31 1 5.6022 0.9408 0.5119 32 1 3.8250 -3.2870 0.0153 33 1 1.8789 -5.1254 0.9151 34 1 1.8779 -5.1340 -0.8648 35 1 2.6529 -7.5451 0.7521 36 1 2.7418 -7.4275 -1.0218 37 1 4.1763 -7.9186 -0.0889 38 1 3.6610 -4.6120 -2.7922 39 1 4.8710 -5.8693 -3.1433 40 1 3.2721 -6.3257 -2.5081 41 1 6.2684 -3.2142 -3.5195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275828207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:57 Heat of formation + Delta-G solvation = 42.622090 kcal Electronic energy + Delta-G solvation = -22727.645034 eV Core-core repulsion = 19451.430286 eV Total energy + Delta-G solvation = -3276.214747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.56772 -40.37955 -38.34650 -35.38387 -34.77831 -33.84250 -32.70494 -31.09368 -29.13249 -28.06796 -27.99036 -26.46749 -24.91358 -23.34178 -21.58701 -21.10442 -20.63006 -18.84429 -18.50125 -17.28474 -17.24126 -17.09077 -16.74116 -16.10720 -15.52647 -15.28731 -14.73238 -14.44948 -14.35420 -14.18129 -14.10643 -13.77693 -13.58308 -13.33469 -13.26760 -13.15659 -12.96986 -12.83860 -12.61189 -12.47494 -12.27342 -12.06314 -11.73831 -11.69298 -11.46683 -10.99087 -10.60038 -10.24389 -9.89782 -9.60366 -8.73953 -7.75585 -5.24265 0.62643 1.21260 1.45988 1.48524 1.57579 1.68617 2.37587 2.50592 2.54215 3.38584 3.46826 3.66883 3.92425 4.04780 4.11867 4.35973 4.39598 4.41341 4.50474 4.62179 4.64491 4.66697 4.71686 4.82783 4.85447 4.93579 5.08387 5.10228 5.24532 5.28341 5.30496 5.47727 5.56999 5.63003 5.70993 5.75691 5.99859 6.37382 6.61390 7.00546 7.20129 7.29470 7.91648 8.37420 9.26302 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.006855 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.025497 B = 4083.391231 C = 5690.129544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.282 5.282 5 C 0.078 3.922 6 N -0.284 5.284 7 C -0.051 4.051 8 C 0.590 3.410 9 O -0.575 6.575 10 N -0.693 5.693 11 C 0.112 3.888 12 C 0.155 3.845 13 H 0.070 0.930 14 C -0.146 4.146 15 N -0.602 5.602 16 C 0.184 3.816 17 C -0.259 4.259 18 H 0.071 0.929 19 C -0.043 4.043 20 N -0.927 5.927 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.297 1.297 24 H -0.295 1.295 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.055 0.945 38 H -0.006 1.006 39 H 0.015 0.985 40 H 0.025 0.975 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 10.385 7.375 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.186 4.186 3 C -0.150 4.150 4 N -0.071 5.071 5 C -0.061 4.061 6 N -0.121 5.121 7 C -0.210 4.210 8 C 0.376 3.624 9 O -0.455 6.455 10 N -0.342 5.342 11 C -0.014 4.014 12 C 0.048 3.952 13 H 0.088 0.912 14 C -0.206 4.206 15 N -0.325 5.325 16 C 0.039 3.961 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.225 1.225 24 H -0.222 1.222 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.248 0.752 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.108 0.892 32 H 0.247 0.753 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.012 0.988 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.815 9.952 7.251 13.222 hybrid contribution 0.857 0.446 -0.568 1.120 sum -3.959 10.398 6.683 12.979 Atomic orbital electron populations 1.20093 0.87152 1.02844 1.02481 1.20769 0.98478 0.90401 1.08936 1.23265 0.82581 1.01735 1.07382 1.45806 1.08882 1.03057 1.49310 1.22568 0.83529 0.94400 1.05592 1.73650 1.23376 0.95679 1.19408 1.21948 0.90670 0.95091 1.13249 1.17274 0.85183 0.83789 0.76145 1.90645 1.17607 1.83577 1.53687 1.45840 1.10431 1.06247 1.71655 1.21966 0.98315 0.80408 1.00667 1.20867 0.89568 0.93497 0.91289 0.91163 1.22039 1.01325 0.95196 1.01992 1.44065 1.10937 1.76692 1.00782 1.20382 0.94816 0.95485 0.85385 1.19497 0.89949 1.25324 1.04121 0.91141 1.25660 1.01563 0.98024 0.98626 1.70281 1.34794 1.37065 1.15233 0.85300 0.81553 0.76896 0.77228 1.19201 1.22464 1.22184 0.91042 0.89103 0.92992 0.75212 0.89075 0.84150 0.89237 0.75294 0.90803 0.93734 0.90299 0.93183 0.92627 0.98784 0.96595 0.95689 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 9.93 71.23 0.71 -1.11 16 2 C -0.18 -5.56 6.25 -19.72 -0.12 -5.68 16 3 C -0.01 -0.16 11.40 83.54 0.95 0.79 16 4 N -0.28 -7.90 3.70 -369.45 -1.37 -9.27 16 5 C 0.08 1.32 11.31 127.77 1.44 2.76 16 6 N -0.28 -11.07 11.67 -48.17 -0.56 -11.63 16 7 C -0.05 -2.07 7.13 42.46 0.30 -1.77 16 8 C 0.59 26.34 7.82 86.75 0.68 27.02 16 9 O -0.58 -26.71 15.11 -3.93 -0.06 -26.77 16 10 N -0.69 -30.84 5.39 -466.08 -2.51 -33.35 16 11 C 0.11 4.49 4.97 86.38 0.43 4.92 16 12 C 0.16 6.14 2.87 44.99 0.13 6.27 16 13 H 0.07 2.75 7.87 -2.38 -0.02 2.73 16 14 C -0.15 -4.73 9.18 71.98 0.66 -4.07 16 15 N -0.60 -29.24 2.29 -702.77 -1.61 -30.85 16 16 C 0.18 9.34 8.11 127.77 1.04 10.37 16 17 C -0.26 -13.72 9.32 84.03 0.78 -12.93 16 18 H 0.07 3.64 7.82 -2.91 -0.02 3.61 16 19 C -0.04 -2.35 5.12 84.86 0.43 -1.92 16 20 N -0.93 -54.42 10.65 21.65 0.23 -54.19 16 21 Si 0.96 44.64 29.57 68.60 2.03 46.67 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.70 6.72 -2.39 -0.02 1.69 16 28 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.14 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.41 19.92 7.62 -92.71 -0.71 19.21 16 33 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.04 1.90 7.84 -2.39 -0.02 1.88 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.64 6.66 -2.39 -0.02 1.62 16 37 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 38 H -0.01 -0.35 7.41 -2.39 -0.02 -0.37 16 39 H 0.02 0.85 7.23 -2.39 -0.02 0.83 16 40 H 0.02 1.10 6.43 -2.39 -0.02 1.09 16 41 H 0.24 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -73.82 340.18 3.91 -69.91 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.32 Total: 24.82 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.44 Total: 24.66 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -5.81 Total: -139.29 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.82 3.91 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275828207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.533 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds