Wall clock time and date at job start Tue Mar 31 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 N 1.33319 * 126.11026 * 89.97512 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47177 * 179.72928 * 6 5 4 8 8 C 1.36670 * 126.10456 * 269.97632 * 3 2 1 9 9 C 1.46757 * 126.84538 * 0.02562 * 8 3 2 10 10 O 1.21682 * 120.00353 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00164 * 179.97438 * 9 8 3 12 12 C 1.46499 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47426 * 180.02562 * 13 12 11 15 15 H 1.09007 * 109.46965 * 305.00163 * 14 13 12 16 16 C 1.52992 * 109.47507 * 184.99690 * 14 13 12 17 17 N 1.46507 * 109.47212 * 64.99374 * 14 13 12 18 18 C 1.36932 * 120.00281 * 205.00404 * 17 14 13 19 19 H 1.08003 * 119.99826 * 0.02562 * 18 17 14 20 20 C 1.38812 * 119.99956 * 180.02562 * 18 17 14 21 21 N 1.31612 * 120.00260 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47338 * 89.99726 * 22 20 18 24 24 H 1.48498 * 109.47254 * 209.99930 * 22 20 18 25 25 H 1.48508 * 109.47089 * 329.99727 * 22 20 18 26 26 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47004 * 300.00154 * 1 2 3 28 28 H 1.08991 * 109.47094 * 60.00173 * 1 2 3 29 29 H 1.08999 * 109.47004 * 239.99845 * 2 1 3 30 30 H 1.08996 * 109.47534 * 119.99990 * 2 1 3 31 31 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 32 32 H 0.97001 * 119.99255 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47155 * 300.00107 * 12 11 9 34 34 H 1.08993 * 109.46937 * 60.00476 * 12 11 9 35 35 H 1.09007 * 109.46757 * 299.99737 * 13 12 11 36 36 H 1.08998 * 109.47446 * 59.99679 * 13 12 11 37 37 H 1.09002 * 109.47348 * 299.99759 * 16 14 13 38 38 H 1.09005 * 109.47394 * 60.00239 * 16 14 13 39 39 H 1.09001 * 109.47095 * 179.97438 * 16 14 13 40 40 H 0.97006 * 119.99593 * 25.00596 * 17 14 13 41 41 H 0.96999 * 120.00436 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7071 6 7 2.7295 3.4072 -0.6363 7 1 2.9942 4.1693 -1.1750 8 6 2.3011 2.1800 -1.1042 9 6 2.1578 1.7743 -2.5073 10 8 1.7617 0.6565 -2.7800 11 7 2.4638 2.6401 -3.4938 12 6 2.3201 2.2353 -4.8944 13 6 2.7306 3.3943 -5.8049 14 6 2.5800 2.9718 -7.2677 15 1 3.1494 2.0589 -7.4427 16 6 3.1071 4.0839 -8.1766 17 7 1.1657 2.7292 -7.5628 18 6 0.8139 1.8838 -8.5810 19 1 1.5791 1.3956 -9.1662 20 6 -0.5262 1.6543 -8.8609 21 7 -1.4587 2.2489 -8.1474 22 14 -1.0061 0.5005 -10.2494 23 1 -1.1359 -0.8816 -9.7220 24 1 -2.3037 0.9339 -10.8270 25 1 0.0400 0.5321 -11.3031 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.9953 4.1458 1.3744 32 1 2.7792 3.5312 -3.2764 33 1 2.9597 1.3748 -5.0914 34 1 1.2817 1.9687 -5.0909 35 1 2.0913 4.2549 -5.6080 36 1 3.7691 3.6606 -5.6083 37 1 2.5377 4.9967 -8.0017 38 1 4.1595 4.2644 -7.9572 39 1 3.0002 3.7826 -9.2187 40 1 0.4784 3.1674 -7.0369 41 1 -2.3952 2.0889 -8.3432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281763643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:44 Heat of formation + Delta-G solvation = 13.814183 kcal Electronic energy + Delta-G solvation = -21602.487930 eV Core-core repulsion = 18325.023978 eV Total energy + Delta-G solvation = -3277.463952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40514 -39.22041 -36.64677 -34.84290 -33.94914 -32.42606 -32.03605 -29.77653 -28.88739 -27.98795 -24.52146 -23.74342 -23.04548 -22.45651 -21.05477 -20.17395 -19.51701 -18.75418 -17.23801 -16.22031 -15.84398 -15.80876 -15.16739 -14.83195 -14.54767 -14.03194 -13.90693 -13.83037 -13.51718 -13.42834 -12.96096 -12.53934 -12.35841 -12.09493 -11.59468 -11.44650 -11.16245 -11.00370 -10.92871 -10.75864 -10.67122 -10.52451 -10.31353 -10.21446 -10.03311 -9.75367 -9.64954 -9.04755 -8.90739 -8.60706 -6.97079 -5.76089 -3.05132 1.17335 2.66037 2.69253 3.17769 3.31430 3.45322 3.50398 3.51704 4.23548 4.60138 4.66198 4.85123 5.01288 5.21834 5.32611 5.46467 5.51127 5.52885 5.54229 5.63476 5.66865 5.82538 5.99682 6.05016 6.12383 6.21613 6.27882 6.30922 6.34094 6.38937 6.47669 6.57841 6.64426 6.81985 6.96609 7.01819 7.44385 7.71103 7.74588 8.20237 8.42004 9.53591 10.09363 10.43891 11.46511 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.003697 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.249167 B = 7572.371855 C = 8591.527089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.098 3.902 4 N -0.498 5.498 5 C 0.214 3.786 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.086 4.086 9 C 0.588 3.412 10 O -0.514 6.514 11 N -0.728 5.728 12 C 0.123 3.877 13 C -0.132 4.132 14 C 0.175 3.825 15 H 0.050 0.950 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.214 0.786 32 H 0.388 0.612 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 5.235 16.427 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.036 4.036 4 N -0.218 5.218 5 C -0.070 4.070 6 N -0.161 5.161 7 H 0.260 0.740 8 C -0.202 4.202 9 C 0.373 3.627 10 O -0.389 6.389 11 N -0.378 5.378 12 C 0.000 4.000 13 C -0.171 4.171 14 C 0.064 3.936 15 H 0.068 0.932 16 C -0.224 4.224 17 N -0.366 5.366 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.231 0.769 32 H 0.221 0.779 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.500 3.988 16.839 20.241 hybrid contribution -0.109 1.014 -1.553 1.858 sum 10.391 5.002 15.285 19.148 Atomic orbital electron populations 1.21618 0.94260 1.01913 1.01845 1.20069 0.96362 0.88663 1.03654 1.21070 0.98791 0.97131 0.86574 1.70121 1.18383 1.02736 1.30556 1.25113 1.01861 0.97992 0.82061 1.43336 1.50810 1.13183 1.08806 0.73992 1.21100 1.15669 0.88019 0.95404 1.16828 0.78174 0.85208 0.82453 1.90865 1.45624 1.19746 1.82662 1.46028 1.68238 1.16106 1.07462 1.21515 1.03944 0.97537 0.76959 1.22069 1.00515 0.97658 0.96884 1.20143 0.88049 0.95743 0.89652 0.93217 1.22427 0.98181 1.00152 1.01602 1.42448 1.00058 1.54558 1.39488 1.19215 0.91235 1.18602 1.08036 0.91194 1.24718 0.95763 1.00606 0.99662 1.69647 0.99553 1.46817 1.42046 0.86222 0.77621 0.80734 0.81802 1.21643 1.21846 1.20815 0.92107 0.93031 0.92352 0.88687 0.90771 0.76935 0.77906 0.91466 0.89359 0.91670 0.91996 0.93555 0.94611 0.92649 0.78316 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 37.16 0.37 -1.38 16 2 C -0.05 -0.64 5.93 -27.88 -0.17 -0.80 16 3 C 0.10 1.32 6.40 -82.51 -0.53 0.79 16 4 N -0.50 -6.10 11.20 -10.64 -0.12 -6.22 16 5 C 0.21 1.76 13.01 -90.57 -1.18 0.58 16 6 N -0.56 -4.51 6.07 -10.79 -0.07 -4.58 16 7 H 0.42 1.87 8.32 -40.82 -0.34 1.54 16 8 C -0.09 -1.09 7.08 -82.14 -0.58 -1.67 16 9 C 0.59 8.79 7.79 -12.82 -0.10 8.69 16 10 O -0.51 -9.63 14.82 5.20 0.08 -9.55 16 11 N -0.73 -9.33 5.55 -61.60 -0.34 -9.67 16 12 C 0.12 1.95 5.56 -4.04 -0.02 1.93 16 13 C -0.13 -1.91 4.87 -26.73 -0.13 -2.04 16 14 C 0.17 3.24 2.89 -67.93 -0.20 3.04 16 15 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16 16 C -0.16 -2.77 9.49 37.15 0.35 -2.41 16 17 N -0.72 -17.39 4.57 -53.42 -0.24 -17.64 16 18 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.36 6.48 -51.93 -0.34 1.02 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.39 3.53 7.72 -40.82 -0.31 3.21 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -34.39 346.25 -8.53 -42.92 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.33 Total: 9.79 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.43 Total: -0.38 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.05 Total: -65.44 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.39 -8.53 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281763643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.730 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds