Wall clock time and date at job start Tue Mar 31 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89915 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47298 * 95.01633 * 6 5 4 8 8 C 1.34781 * 120.00058 * 180.02562 * 7 6 5 9 9 O 1.21589 * 119.99866 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00181 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00154 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47111 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47615 * 300.00458 * 12 11 10 14 14 C 1.53007 * 109.46966 * 60.00590 * 12 11 10 15 15 C 1.50701 * 109.47054 * 180.02562 * 12 11 10 16 16 H 1.07993 * 120.00096 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00123 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99668 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00221 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47375 * 89.99658 * 19 17 15 21 21 H 1.48497 * 109.46890 * 210.00350 * 19 17 15 22 22 H 1.48506 * 109.46785 * 329.99974 * 19 17 15 23 23 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 24 24 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 25 25 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 26 26 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 27 27 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 28 28 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47460 * 215.01884 * 6 5 4 30 30 H 1.09004 * 109.46830 * 335.01268 * 6 5 4 31 31 H 0.97000 * 120.00148 * 359.97438 * 7 6 5 32 32 H 0.97000 * 120.00025 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.47643 * 300.00449 * 11 10 8 34 34 H 1.09001 * 109.46654 * 60.00242 * 11 10 8 35 35 H 1.09006 * 109.47415 * 59.99711 * 13 12 11 36 36 H 1.08998 * 109.47674 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47417 * 299.99738 * 13 12 11 38 38 H 1.09001 * 109.46618 * 59.99501 * 14 12 11 39 39 H 1.09000 * 109.47173 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.46954 * 299.99676 * 14 12 11 41 41 H 0.97001 * 120.00142 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 7 5.0733 -2.0095 1.3743 8 6 6.1295 -2.8103 1.6188 9 8 6.8140 -3.2120 0.6976 10 7 6.4275 -3.1651 2.8843 11 6 7.5752 -4.0360 3.1500 12 6 7.6910 -4.2820 4.6556 13 6 7.8860 -2.9470 5.3771 14 6 6.4131 -4.9537 5.1624 15 6 8.8720 -5.1774 4.9290 16 1 9.4794 -5.5348 4.1107 17 6 9.1770 -5.5402 6.2238 18 7 8.4369 -5.1053 7.2201 19 14 10.6412 -6.6495 6.5627 20 1 11.8536 -5.8183 6.7736 21 1 10.3779 -7.4587 7.7796 22 1 10.8561 -7.5533 5.4041 23 7 2.2892 -1.1327 -0.0002 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.9281 2.1193 -0.0007 28 1 4.4211 1.2964 -0.0011 29 1 4.5443 -2.5171 -0.5907 30 1 5.5933 -1.0874 -0.4364 31 1 4.5279 -1.6882 2.1093 32 1 5.8821 -2.8438 3.6193 33 1 7.4366 -4.9870 2.6357 34 1 8.4857 -3.5573 2.7894 35 1 7.0321 -2.2990 5.1794 36 1 7.9680 -3.1222 6.4498 37 1 8.7964 -2.4685 5.0162 38 1 6.2742 -5.9048 4.6483 39 1 6.4957 -5.1294 6.2350 40 1 5.5592 -4.3058 4.9647 41 1 8.6516 -5.3602 8.1311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312427730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:11 Heat of formation + Delta-G solvation = 23.224343 kcal Electronic energy + Delta-G solvation = -21434.508126 eV Core-core repulsion = 18157.452229 eV Total energy + Delta-G solvation = -3277.055897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -42.18528 -40.95174 -38.26471 -36.16416 -34.97680 -33.90744 -32.60416 -31.09613 -29.27851 -27.54211 -27.40921 -26.73241 -25.54438 -22.08445 -22.02583 -21.05855 -20.55014 -19.49473 -17.91721 -17.73594 -17.16192 -16.64430 -16.60890 -16.26177 -15.55615 -15.22764 -15.15306 -14.78521 -14.64190 -14.47777 -14.00015 -13.87129 -13.46789 -13.31814 -13.13935 -13.08720 -13.05494 -12.66012 -12.57274 -12.22827 -12.11846 -11.65946 -11.46000 -11.41950 -11.14702 -10.68504 -10.39911 -10.35360 -10.29268 -9.65849 -9.54559 -8.00277 -6.15781 0.81458 1.44388 1.46218 1.48620 1.55850 1.64595 2.16077 2.21596 2.48826 3.23349 3.47051 3.48445 3.85102 4.16561 4.35682 4.44131 4.46245 4.56825 4.59973 4.72250 4.73925 4.80264 4.87987 5.02642 5.08332 5.10013 5.13297 5.22741 5.40114 5.43397 5.58110 5.65145 5.69160 5.69562 6.05346 6.15333 6.17030 6.24098 6.45924 6.68741 6.88581 7.14274 7.51757 7.63104 8.98850 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038389 B = 0.002887 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.201719 B = 9696.571863 C = 9990.028381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.376 5.376 3 C 0.065 3.935 4 C -0.274 4.274 5 C 0.044 3.956 6 C 0.227 3.773 7 N -0.728 5.728 8 C 0.701 3.299 9 O -0.638 6.638 10 N -0.725 5.725 11 C 0.167 3.833 12 C 0.052 3.948 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.528 4.528 16 H 0.045 0.955 17 C 0.028 3.972 18 N -0.900 5.900 19 Si 0.946 3.054 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.276 1.276 23 N -0.321 5.321 24 H 0.086 0.914 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.219 0.781 28 H 0.163 0.837 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.406 0.594 32 H 0.404 0.596 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.164 15.598 -10.953 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.158 5.158 3 C -0.081 4.081 4 C -0.304 4.304 5 C -0.121 4.121 6 C 0.102 3.898 7 N -0.385 5.385 8 C 0.400 3.600 9 O -0.520 6.520 10 N -0.381 5.381 11 C 0.043 3.957 12 C 0.052 3.948 13 C -0.178 4.178 14 C -0.178 4.178 15 C -0.566 4.566 16 H 0.064 0.936 17 C -0.172 4.172 18 N -0.539 5.539 19 Si 0.773 3.227 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.201 1.201 23 N -0.146 5.146 24 H 0.104 0.896 25 H 0.140 0.860 26 H 0.104 0.896 27 H 0.236 0.764 28 H 0.180 0.820 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.242 0.758 32 H 0.241 0.759 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.521 14.213 -11.596 25.366 hybrid contribution 0.977 0.063 0.919 1.343 sum -16.545 14.275 -10.676 24.320 Atomic orbital electron populations 1.22240 0.71852 1.06069 1.04702 1.48944 1.08047 1.03359 1.55498 1.23231 0.90261 0.94882 0.99720 1.21727 0.98791 0.93352 1.16483 1.22140 0.92473 0.94976 1.02474 1.19213 0.91904 0.96226 0.82506 1.44866 1.30962 1.53171 1.09548 1.16080 0.81153 0.79313 0.83431 1.90860 1.54639 1.61799 1.44739 1.45196 1.33351 1.53450 1.06071 1.21144 0.85808 0.91115 0.97627 1.18353 0.94286 0.93818 0.88388 1.21661 0.97520 0.95837 1.02740 1.21669 0.95799 0.97673 1.02663 1.21280 1.12593 1.30176 0.92579 0.93631 1.25461 0.98570 0.97109 0.96074 1.69912 1.39279 1.45496 0.99214 0.85742 0.80360 0.79199 0.77408 1.20414 1.20853 1.20100 1.77315 1.02030 1.10086 1.25130 0.89582 0.85982 0.89649 0.76442 0.81965 0.91921 0.89259 0.75844 0.75920 0.94674 0.94348 0.94576 0.91897 0.96168 0.96385 0.91839 0.94683 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.47 127.77 1.47 2.10 16 2 N -0.38 -6.03 4.01 -369.56 -1.48 -7.51 16 3 C 0.07 0.82 11.49 83.54 0.96 1.78 16 4 C -0.27 -4.75 10.74 21.99 0.24 -4.51 16 5 C 0.04 1.02 6.59 43.10 0.28 1.30 16 6 C 0.23 5.94 6.23 85.63 0.53 6.48 16 7 N -0.73 -20.61 5.55 -482.30 -2.68 -23.29 16 8 C 0.70 25.96 8.57 179.06 1.53 27.49 16 9 O -0.64 -28.90 16.34 -4.00 -0.07 -28.96 16 10 N -0.73 -26.72 4.96 -478.54 -2.37 -29.09 16 11 C 0.17 7.44 4.50 86.38 0.39 7.83 16 12 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 13 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 14 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 15 C -0.53 -28.42 8.01 25.60 0.21 -28.21 16 16 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 17 C 0.03 1.47 5.15 84.66 0.44 1.90 16 18 N -0.90 -48.59 9.35 21.45 0.20 -48.39 16 19 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 N -0.32 -7.78 12.58 -47.39 -0.60 -8.37 16 24 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.12 0.00 8.14 -2.39 -0.02 -0.01 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.41 9.76 8.48 -92.71 -0.79 8.98 16 32 H 0.40 13.02 6.18 -92.71 -0.57 12.44 16 33 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 36 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 40 H 0.03 1.35 6.86 -2.39 -0.02 1.34 16 41 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -70.40 339.03 1.89 -68.50 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.31 Total: 23.09 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 7.18 Total: 8.84 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -6.93 Total: -116.66 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.07 Total: -28.96 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.40 1.89 -68.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312427730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.728 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds