Wall clock time and date at job start Tue Mar 31 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35366 * 127.25121 * 2 1 4 4 N 1.35031 * 107.22956 * 180.26461 * 3 2 1 5 5 C 1.46499 * 124.88356 * 179.72642 * 4 3 2 6 6 N 1.28463 * 110.23321 * 359.72472 * 4 3 2 7 7 C 1.31813 * 110.07242 * 0.02562 * 6 4 3 8 8 C 1.47708 * 126.51765 * 179.97438 * 7 6 4 9 9 O 1.21569 * 119.99771 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00397 * 0.02615 * 8 7 6 11 11 C 1.46496 * 120.00519 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47547 * 179.72462 * 11 10 8 13 13 C 1.52997 * 109.47122 * 180.02562 * 12 11 10 14 14 N 1.46505 * 109.47123 * 180.02562 * 13 12 11 15 15 C 1.46497 * 120.00165 * 89.99367 * 14 13 12 16 16 C 1.36943 * 119.99927 * 270.00135 * 14 13 12 17 17 H 1.08000 * 120.00033 * 142.03386 * 16 14 13 18 18 C 1.38815 * 119.99698 * 322.03429 * 16 14 13 19 19 N 1.31612 * 119.99455 * 157.02173 * 18 16 14 20 20 Si 1.86795 * 120.00217 * 337.01982 * 18 16 14 21 21 H 1.48502 * 109.46868 * 95.68222 * 20 18 16 22 22 H 1.48496 * 109.47112 * 215.68222 * 20 18 16 23 23 H 1.48499 * 109.47166 * 335.68402 * 20 18 16 24 24 H 1.09006 * 109.47244 * 270.18218 * 1 2 3 25 25 H 1.09001 * 109.47808 * 30.18290 * 1 2 3 26 26 H 1.08999 * 109.47605 * 150.18924 * 1 2 3 27 27 H 1.08008 * 126.38012 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47237 * 269.97818 * 5 4 3 29 29 H 1.09003 * 109.47243 * 29.97190 * 5 4 3 30 30 H 1.08998 * 109.47188 * 149.97472 * 5 4 3 31 31 H 0.97002 * 119.99898 * 359.72329 * 10 8 7 32 32 H 1.09001 * 109.47109 * 299.72940 * 11 10 8 33 33 H 1.09001 * 109.46967 * 59.72780 * 11 10 8 34 34 H 1.09001 * 109.47306 * 300.00357 * 12 11 10 35 35 H 1.09001 * 109.46728 * 60.00171 * 12 11 10 36 36 H 1.08996 * 109.47106 * 299.99744 * 13 12 11 37 37 H 1.09001 * 109.47427 * 60.00296 * 13 12 11 38 38 H 1.09008 * 109.46913 * 85.65353 * 15 14 13 39 39 H 1.08998 * 109.47539 * 205.64939 * 15 14 13 40 40 H 1.09002 * 109.47363 * 325.66017 * 15 14 13 41 41 H 0.97006 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5950 0.6152 -0.0060 5 6 4.7937 1.4575 -0.0137 6 7 3.5998 -0.6694 -0.0038 7 6 2.3634 -1.1264 0.0030 8 6 1.9505 -2.5446 0.0070 9 8 0.7698 -2.8338 0.0128 10 7 2.8827 -3.5179 0.0041 11 6 2.4732 -4.9245 0.0085 12 6 3.7155 -5.8175 -0.0030 13 6 3.2877 -7.2864 0.0010 14 7 4.4773 -8.1415 -0.0094 15 6 5.0834 -8.5687 1.2541 16 6 5.0228 -8.5413 -1.2001 17 1 6.0955 -8.6044 -1.3086 18 6 4.1970 -8.8654 -2.2678 19 7 4.6596 -8.8081 -3.4985 20 14 2.4291 -9.3829 -1.9576 21 1 1.5361 -8.2053 -2.1022 22 1 2.0383 -10.4243 -2.9414 23 1 2.3076 -9.9304 -0.5826 24 1 -0.3634 0.0033 1.0277 25 1 -0.3635 0.8883 -0.5167 26 1 -0.3634 -0.8916 -0.5109 27 1 2.0220 2.1138 -0.0004 28 1 5.0857 1.6643 -1.0433 29 1 4.5818 2.3957 0.4992 30 1 5.6052 0.9393 0.4970 31 1 3.8248 -3.2871 -0.0047 32 1 1.8867 -5.1293 0.9042 33 1 1.8699 -5.1300 -0.8757 34 1 4.3020 -5.6126 -0.8986 35 1 4.3188 -5.6119 0.8813 36 1 2.7011 -7.4915 0.8965 37 1 2.6846 -7.4917 -0.8834 38 1 4.5812 -9.4674 1.6124 39 1 6.1406 -8.7818 1.0962 40 1 4.9792 -7.7750 1.9938 41 1 4.0825 -9.0343 -4.2447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316823354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:59 Heat of formation + Delta-G solvation = 62.922671 kcal Electronic energy + Delta-G solvation = -21488.963485 eV Core-core repulsion = 18213.629037 eV Total energy + Delta-G solvation = -3275.334448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.82083 -39.19598 -36.44333 -34.72426 -34.07109 -32.26882 -31.67239 -30.63996 -28.43263 -27.03734 -26.20756 -25.11298 -22.74683 -21.56913 -20.79199 -20.74676 -19.82774 -17.70353 -16.72701 -16.54574 -16.39494 -15.57817 -15.47506 -14.93953 -14.27464 -14.02204 -13.77673 -13.67375 -13.32592 -13.19987 -13.15395 -12.83111 -12.67843 -12.61297 -12.18973 -12.09370 -11.65899 -11.29776 -11.13970 -10.91813 -10.86537 -10.47946 -10.36628 -9.89555 -9.72484 -9.49394 -9.42255 -8.95531 -8.74763 -8.47911 -6.79033 -5.98008 -3.39037 1.50797 1.95329 2.24390 3.34523 3.37307 3.49531 3.50780 3.56842 4.12385 4.53129 4.55875 4.68023 4.72754 4.96719 5.00911 5.08736 5.16253 5.38787 5.39835 5.56370 5.69339 5.69833 5.87290 5.92121 6.05828 6.11227 6.21206 6.31529 6.37001 6.40139 6.54836 6.58798 6.71828 6.74185 6.82502 6.99128 7.56641 7.85084 8.08068 8.36788 8.39921 9.01225 9.73579 10.15139 11.17603 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.003500 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.319678 B = 7998.203377 C = 8380.254537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.146 4.146 3 C -0.027 4.027 4 N -0.286 5.286 5 C 0.088 3.912 6 N -0.260 5.260 7 C -0.014 4.014 8 C 0.600 3.400 9 O -0.535 6.535 10 N -0.712 5.712 11 C 0.118 3.882 12 C -0.146 4.146 13 C 0.143 3.857 14 N -0.613 5.613 15 C 0.125 3.875 16 C -0.273 4.273 17 H 0.078 0.922 18 C 0.037 3.963 19 N -0.899 5.899 20 Si 0.876 3.124 21 H -0.283 1.283 22 H -0.301 1.301 23 H -0.270 1.270 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.180 0.820 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.406 0.594 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.006 0.994 39 H 0.044 0.956 40 H 0.027 0.973 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 22.910 8.853 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.170 4.170 4 N -0.074 5.074 5 C -0.053 4.053 6 N -0.096 5.096 7 C -0.174 4.174 8 C 0.384 3.616 9 O -0.411 6.411 10 N -0.362 5.362 11 C -0.005 4.005 12 C -0.186 4.186 13 C 0.016 3.984 14 N -0.336 5.336 15 C -0.021 4.021 16 C -0.401 4.401 17 H 0.095 0.905 18 C -0.164 4.164 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.211 1.211 22 H -0.229 1.229 23 H -0.194 1.194 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.198 0.802 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.241 0.759 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.451 22.339 8.692 24.095 hybrid contribution -1.131 0.258 -0.038 1.161 sum -3.582 22.597 8.654 24.461 Atomic orbital electron populations 1.20173 0.88070 1.03071 1.02314 1.20399 0.97515 0.90445 1.07208 1.22597 0.83706 1.00477 1.10176 1.45264 1.07081 1.03775 1.51231 1.22171 0.84866 0.93710 1.04522 1.73525 1.23302 0.93723 1.19046 1.21938 0.89415 0.95195 1.10860 1.16895 0.85545 0.82556 0.76644 1.90758 1.16875 1.82709 1.50716 1.45978 1.09975 1.06473 1.73811 1.21514 0.98374 0.78548 1.02103 1.22386 0.96249 0.97132 1.02864 1.21034 0.89818 0.88101 0.99416 1.44043 1.32224 1.54665 1.02713 1.21078 0.97285 0.96045 0.87656 1.18791 0.92602 1.41423 0.87288 0.90473 1.25472 0.97963 0.97796 0.95160 1.69882 1.37066 1.49086 0.97954 0.86940 0.86282 0.78245 0.77957 1.21066 1.22855 1.19431 0.91520 0.92115 0.89797 0.80247 0.89659 0.88692 0.88442 0.75912 0.91655 0.91354 0.90504 0.92190 0.94095 0.92695 0.97562 0.93689 0.95478 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.92 36.00 0.36 -0.49 16 2 C -0.15 -1.79 6.25 -104.41 -0.65 -2.44 16 3 C -0.03 -0.25 11.40 -17.17 -0.20 -0.45 16 4 N -0.29 -2.78 3.70 -68.13 -0.25 -3.03 16 5 C 0.09 0.40 11.31 59.85 0.68 1.08 16 6 N -0.26 -3.43 11.67 33.42 0.39 -3.04 16 7 C -0.01 -0.20 7.13 -82.76 -0.59 -0.79 16 8 C 0.60 10.07 7.82 -12.39 -0.10 9.97 16 9 O -0.54 -10.19 15.12 5.31 0.08 -10.11 16 10 N -0.71 -11.35 5.55 -61.30 -0.34 -11.69 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 12 C -0.15 -2.72 5.65 -26.73 -0.15 -2.87 16 13 C 0.14 3.11 4.53 -4.04 -0.02 3.09 16 14 N -0.61 -14.86 2.47 -181.11 -0.45 -15.31 16 15 C 0.12 2.53 10.70 59.85 0.64 3.17 16 16 C -0.27 -7.73 9.88 -15.06 -0.15 -7.88 16 17 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 18 C 0.04 1.08 5.29 -17.43 -0.09 0.98 16 19 N -0.90 -27.67 13.97 55.49 0.78 -26.90 16 20 Si 0.88 22.66 25.10 -169.99 -4.27 18.39 16 21 H -0.28 -7.11 6.68 56.52 0.38 -6.73 16 22 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 23 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.10 6.72 -51.93 -0.35 0.75 16 27 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.16 8.13 -51.93 -0.42 -0.26 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.41 5.91 8.20 -40.82 -0.33 5.57 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.06 1.32 3.38 -51.93 -0.18 1.15 16 38 H 0.01 0.12 8.14 -51.92 -0.42 -0.30 16 39 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 40 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -35.20 342.35 -5.54 -40.75 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.35 Total: 0.40 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.29 Total: 5.38 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.13 Total: -59.97 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.27 Total: 18.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.20 -5.54 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316823354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.671 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds