Wall clock time and date at job start Tue Mar 31 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35366 * 127.25121 * 2 1 4 4 N 1.35031 * 107.22956 * 180.26461 * 3 2 1 5 5 C 1.46499 * 124.88356 * 179.72642 * 4 3 2 6 6 N 1.28463 * 110.23321 * 359.72472 * 4 3 2 7 7 C 1.31813 * 110.07242 * 0.02562 * 6 4 3 8 8 C 1.47708 * 126.51765 * 179.97438 * 7 6 4 9 9 O 1.21569 * 119.99771 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00397 * 0.02615 * 8 7 6 11 11 C 1.46496 * 120.00519 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47547 * 179.72462 * 11 10 8 13 13 C 1.52997 * 109.47122 * 180.02562 * 12 11 10 14 14 N 1.46505 * 109.47123 * 180.02562 * 13 12 11 15 15 C 1.46497 * 120.00165 * 89.99367 * 14 13 12 16 16 C 1.36943 * 119.99927 * 270.00135 * 14 13 12 17 17 H 1.08000 * 120.00033 * 142.03386 * 16 14 13 18 18 C 1.38815 * 119.99698 * 322.03429 * 16 14 13 19 19 N 1.31612 * 119.99455 * 157.02173 * 18 16 14 20 20 Si 1.86795 * 120.00217 * 337.01982 * 18 16 14 21 21 H 1.48502 * 109.46868 * 95.68222 * 20 18 16 22 22 H 1.48496 * 109.47112 * 215.68222 * 20 18 16 23 23 H 1.48499 * 109.47166 * 335.68402 * 20 18 16 24 24 H 1.09006 * 109.47244 * 270.18218 * 1 2 3 25 25 H 1.09001 * 109.47808 * 30.18290 * 1 2 3 26 26 H 1.08999 * 109.47605 * 150.18924 * 1 2 3 27 27 H 1.08008 * 126.38012 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47237 * 269.97818 * 5 4 3 29 29 H 1.09003 * 109.47243 * 29.97190 * 5 4 3 30 30 H 1.08998 * 109.47188 * 149.97472 * 5 4 3 31 31 H 0.97002 * 119.99898 * 359.72329 * 10 8 7 32 32 H 1.09001 * 109.47109 * 299.72940 * 11 10 8 33 33 H 1.09001 * 109.46967 * 59.72780 * 11 10 8 34 34 H 1.09001 * 109.47306 * 300.00357 * 12 11 10 35 35 H 1.09001 * 109.46728 * 60.00171 * 12 11 10 36 36 H 1.08996 * 109.47106 * 299.99744 * 13 12 11 37 37 H 1.09001 * 109.47427 * 60.00296 * 13 12 11 38 38 H 1.09008 * 109.46913 * 85.65353 * 15 14 13 39 39 H 1.08998 * 109.47539 * 205.64939 * 15 14 13 40 40 H 1.09002 * 109.47363 * 325.66017 * 15 14 13 41 41 H 0.97006 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5950 0.6152 -0.0060 5 6 4.7937 1.4575 -0.0137 6 7 3.5998 -0.6694 -0.0038 7 6 2.3634 -1.1264 0.0030 8 6 1.9505 -2.5446 0.0070 9 8 0.7698 -2.8338 0.0128 10 7 2.8827 -3.5179 0.0041 11 6 2.4732 -4.9245 0.0085 12 6 3.7155 -5.8175 -0.0030 13 6 3.2877 -7.2864 0.0010 14 7 4.4773 -8.1415 -0.0094 15 6 5.0834 -8.5687 1.2541 16 6 5.0228 -8.5413 -1.2001 17 1 6.0955 -8.6044 -1.3086 18 6 4.1970 -8.8654 -2.2678 19 7 4.6596 -8.8081 -3.4985 20 14 2.4291 -9.3829 -1.9576 21 1 1.5361 -8.2053 -2.1022 22 1 2.0383 -10.4243 -2.9414 23 1 2.3076 -9.9304 -0.5826 24 1 -0.3634 0.0033 1.0277 25 1 -0.3635 0.8883 -0.5167 26 1 -0.3634 -0.8916 -0.5109 27 1 2.0220 2.1138 -0.0004 28 1 5.0857 1.6643 -1.0433 29 1 4.5818 2.3957 0.4992 30 1 5.6052 0.9393 0.4970 31 1 3.8248 -3.2871 -0.0047 32 1 1.8867 -5.1293 0.9042 33 1 1.8699 -5.1300 -0.8757 34 1 4.3020 -5.6126 -0.8986 35 1 4.3188 -5.6119 0.8813 36 1 2.7011 -7.4915 0.8965 37 1 2.6846 -7.4917 -0.8834 38 1 4.5812 -9.4674 1.6124 39 1 6.1406 -8.7818 1.0962 40 1 4.9792 -7.7750 1.9938 41 1 4.0825 -9.0343 -4.2447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316823354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:58 Heat of formation + Delta-G solvation = 37.188683 kcal Electronic energy + Delta-G solvation = -21490.079394 eV Core-core repulsion = 18213.629037 eV Total energy + Delta-G solvation = -3276.450358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.64589 -40.49108 -38.20329 -36.21006 -34.83992 -33.89988 -33.09729 -32.09010 -29.14485 -28.26314 -27.85563 -26.56867 -23.96600 -22.99100 -22.51625 -21.62475 -21.00800 -18.77623 -18.63831 -17.47000 -17.32222 -17.24850 -16.85044 -16.46091 -15.77820 -15.31862 -15.20363 -14.85002 -14.64353 -14.38981 -14.21863 -14.09787 -13.97983 -13.38522 -13.33258 -13.26113 -13.05157 -12.93647 -12.71456 -12.68163 -12.37728 -12.18043 -11.83071 -11.76147 -11.40021 -11.15475 -10.64455 -10.34919 -10.08809 -9.68731 -8.78087 -8.22772 -5.60254 0.49612 1.15167 1.30577 1.39709 1.51004 1.60270 2.16187 2.32216 2.40674 3.02103 3.34462 3.41609 3.87045 3.98117 4.03031 4.18074 4.35783 4.38143 4.42066 4.48971 4.51719 4.58647 4.69120 4.70933 4.74380 4.76415 4.89880 5.01580 5.04212 5.13285 5.19099 5.20551 5.30993 5.40611 5.51291 5.91509 5.92930 6.14938 6.40502 6.88386 6.97692 7.12829 7.61696 8.04110 8.96904 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.003500 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.319678 B = 7998.203377 C = 8380.254537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.277 5.277 5 C 0.075 3.925 6 N -0.280 5.280 7 C -0.051 4.051 8 C 0.595 3.405 9 O -0.567 6.567 10 N -0.708 5.708 11 C 0.128 3.872 12 C -0.127 4.127 13 C 0.136 3.864 14 N -0.627 5.627 15 C 0.122 3.878 16 C -0.263 4.263 17 H 0.043 0.957 18 C -0.016 4.016 19 N -0.946 5.946 20 Si 0.937 3.063 21 H -0.275 1.275 22 H -0.306 1.306 23 H -0.259 1.259 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.229 0.771 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.015 0.985 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 25.570 10.748 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.184 4.184 3 C -0.147 4.147 4 N -0.066 5.066 5 C -0.063 4.063 6 N -0.118 5.118 7 C -0.209 4.209 8 C 0.381 3.619 9 O -0.445 6.445 10 N -0.359 5.359 11 C 0.004 3.996 12 C -0.168 4.168 13 C 0.010 3.990 14 N -0.351 5.351 15 C -0.022 4.022 16 C -0.393 4.393 17 H 0.061 0.939 18 C -0.213 4.213 19 N -0.589 5.589 20 Si 0.766 3.234 21 H -0.202 1.202 22 H -0.235 1.235 23 H -0.183 1.183 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.245 0.755 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.116 0.884 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.904 25.011 10.631 27.331 hybrid contribution -0.833 -0.424 -0.580 1.100 sum -3.737 24.587 10.051 26.824 Atomic orbital electron populations 1.20124 0.87647 1.02919 1.02445 1.20727 0.98297 0.90737 1.08616 1.23241 0.82710 1.01705 1.07061 1.45823 1.08889 1.03065 1.48812 1.22648 0.83256 0.94311 1.06065 1.73456 1.22709 0.95743 1.19888 1.21752 0.90868 0.94456 1.13822 1.17281 0.85113 0.83711 0.75765 1.90725 1.18037 1.83482 1.52213 1.45882 1.10344 1.05914 1.73784 1.21293 0.97397 0.79162 1.01764 1.22108 0.96564 0.95600 1.02488 1.21137 0.88964 0.89259 0.99651 1.44203 1.32814 1.55473 1.02642 1.21212 0.96886 0.97592 0.86542 1.18707 0.91341 1.40220 0.89009 0.93916 1.26049 1.01970 0.98462 0.94838 1.69996 1.38748 1.51322 0.98877 0.85939 0.81785 0.77727 0.77936 1.20208 1.23476 1.18267 0.91273 0.89174 0.92931 0.75496 0.88281 0.84918 0.88385 0.75170 0.90481 0.93294 0.93204 0.90087 0.91110 0.95094 0.96671 0.93988 0.92047 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.92 71.23 0.71 -0.82 16 2 C -0.17 -4.02 6.25 -19.72 -0.12 -4.14 16 3 C 0.00 -0.06 11.40 83.54 0.95 0.89 16 4 N -0.28 -4.62 3.70 -369.45 -1.37 -5.99 16 5 C 0.08 0.42 11.31 127.77 1.44 1.86 16 6 N -0.28 -7.07 11.67 -48.17 -0.56 -7.63 16 7 C -0.05 -1.49 7.13 42.46 0.30 -1.18 16 8 C 0.60 20.35 7.82 86.75 0.68 21.03 16 9 O -0.57 -22.22 15.12 -3.93 -0.06 -22.28 16 10 N -0.71 -22.70 5.55 -466.12 -2.59 -25.29 16 11 C 0.13 4.36 5.67 86.38 0.49 4.85 16 12 C -0.13 -4.64 5.65 30.59 0.17 -4.47 16 13 C 0.14 5.70 4.53 86.38 0.39 6.09 16 14 N -0.63 -29.74 2.47 -726.92 -1.79 -31.54 16 15 C 0.12 4.67 10.70 127.77 1.37 6.04 16 16 C -0.26 -15.14 9.88 84.03 0.83 -14.31 16 17 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 18 C -0.02 -0.97 5.29 84.86 0.45 -0.52 16 19 N -0.95 -59.99 13.97 21.65 0.30 -59.69 16 20 Si 0.94 47.37 25.10 68.60 1.72 49.09 16 21 H -0.27 -13.40 6.68 99.48 0.66 -12.74 16 22 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.42 6.72 -2.39 -0.02 1.40 16 27 H 0.23 0.98 8.06 -2.91 -0.02 0.96 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.13 -0.23 8.13 -2.39 -0.02 -0.25 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.41 12.02 8.20 -92.71 -0.76 11.26 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 37 H 0.03 1.46 3.38 -2.39 -0.01 1.45 16 38 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.04 1.61 8.00 -2.39 -0.02 1.59 16 40 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 41 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -79.39 342.35 3.54 -75.85 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.22 Total: 12.14 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 7.66 Total: 15.32 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -6.01 Total: -130.13 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.72 Total: 49.09 kcal Total: -79.39 3.54 -75.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316823354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.040 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds