Wall clock time and date at job start Tue Mar 31 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 11 11 C 1.52996 * 109.47310 * 299.99476 * 9 7 6 12 12 N 1.46505 * 109.46805 * 179.97438 * 9 7 6 13 13 C 1.34942 * 126.03859 * 85.00218 * 12 9 7 14 14 C 1.35315 * 107.74720 * 179.97438 * 13 12 9 15 15 C 1.39872 * 107.91941 * 359.97438 * 14 13 12 16 16 N 1.30834 * 108.20296 * 359.74723 * 15 14 13 17 17 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 3 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 3 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 3 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 27 27 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 30 30 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 32 32 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 33 33 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 34 34 H 1.08998 * 109.47011 * 60.00399 * 11 9 7 35 35 H 1.09008 * 109.47269 * 180.02562 * 11 9 7 36 36 H 1.08998 * 109.47453 * 300.00451 * 11 9 7 37 37 H 1.08008 * 126.12816 * 359.97438 * 13 12 9 38 38 H 1.08003 * 126.04212 * 180.02562 * 14 13 12 39 39 H 1.08005 * 125.89428 * 179.97438 * 15 14 13 40 40 H 0.97000 * 119.99792 * 264.99726 * 17 3 2 41 41 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 1 5.4680 5.0881 0.7537 11 6 5.4978 5.0452 -1.3999 12 7 7.3583 4.4764 0.0825 13 6 8.2377 4.2564 -0.9171 14 6 9.4838 4.3445 -0.3972 15 6 9.3618 4.6287 0.9669 16 7 8.0883 4.7137 1.2544 17 7 1.6524 2.0975 -1.2518 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0506 3.2991 -2.5530 21 7 -1.1362 3.8574 -2.6635 22 14 1.2435 3.3485 -3.9896 23 1 1.0358 2.1538 -4.8468 24 1 1.0063 4.5780 -4.7879 25 1 2.6369 3.3530 -3.4759 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8500 1.0377 1.0960 32 1 3.9955 0.8311 -0.6660 33 1 3.4411 3.5483 -0.1315 34 1 4.4114 5.0439 -1.4891 35 1 5.8688 6.0662 -1.4895 36 1 5.9280 4.4318 -2.1915 37 1 7.9910 4.0475 -1.9477 38 1 10.4091 4.2186 -0.9397 39 1 10.1781 4.7594 1.6620 40 1 2.2720 2.1232 -1.9978 41 1 -1.3915 4.2943 -3.4911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318502187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:58 Heat of formation + Delta-G solvation = 53.143012 kcal Electronic energy + Delta-G solvation = -22239.621720 eV Core-core repulsion = 18963.863194 eV Total energy + Delta-G solvation = -3275.758526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.32656 -39.56129 -37.00167 -34.67260 -33.90876 -32.42452 -30.38355 -30.14492 -29.66618 -28.09232 -25.08850 -23.56663 -22.54781 -21.22841 -21.06188 -20.34035 -19.67802 -18.09850 -17.36254 -17.03054 -15.72612 -15.64190 -15.09083 -14.63891 -14.35738 -14.12297 -13.85055 -13.62586 -13.25457 -13.09610 -12.95807 -12.81280 -12.67211 -12.56044 -12.41226 -11.81874 -11.62429 -11.24245 -11.07721 -10.79518 -10.72208 -10.49376 -10.38937 -10.10294 -10.03628 -9.57832 -9.38256 -9.07798 -8.93385 -8.59899 -7.44437 -5.90124 -3.26832 1.82813 2.29799 2.56547 2.85931 3.21864 3.28515 3.31072 3.35724 4.31837 4.45190 4.57538 4.69426 4.79669 4.92824 5.10470 5.18704 5.30001 5.35064 5.37146 5.51061 5.67283 5.69028 5.80627 5.81282 5.83874 5.95911 5.98079 6.19952 6.37287 6.43908 6.51894 6.60728 6.65854 6.86171 6.91717 7.22734 7.58928 7.68572 7.85360 8.21590 8.27927 9.05424 9.77484 9.96905 11.27435 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.004679 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.627498 B = 5983.162630 C = 6939.157952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.709 5.709 7 C 0.498 3.502 8 O -0.533 6.533 9 C 0.143 3.857 10 H 0.128 0.872 11 C -0.164 4.164 12 N -0.351 5.351 13 C 0.070 3.930 14 C -0.279 4.279 15 C 0.044 3.956 16 N -0.293 5.293 17 N -0.747 5.747 18 C -0.244 4.244 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.929 5.929 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.411 0.589 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.182 0.818 40 H 0.361 0.639 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.150 0.993 3.718 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.082 0.918 5 C -0.012 4.012 6 N -0.362 5.362 7 C 0.281 3.719 8 O -0.409 6.409 9 C 0.036 3.964 10 H 0.146 0.854 11 C -0.222 4.222 12 N -0.133 5.133 13 C -0.076 4.076 14 C -0.308 4.308 15 C -0.142 4.142 16 N -0.113 5.113 17 N -0.390 5.390 18 C -0.374 4.374 19 H 0.113 0.887 20 C -0.188 4.188 21 N -0.577 5.577 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.198 0.802 40 H 0.194 0.806 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.435 0.638 4.794 15.223 hybrid contribution 1.023 0.102 -1.916 2.174 sum 15.458 0.740 2.878 15.741 Atomic orbital electron populations 1.21780 0.95115 0.99781 1.03796 1.22033 0.97422 0.97731 1.00156 1.20554 0.89612 0.93129 0.90834 0.91827 1.21772 0.95666 0.82148 1.01603 1.45957 1.06561 1.11207 1.72477 1.20631 0.83131 0.90611 0.77510 1.90735 1.55966 1.45688 1.48539 1.21124 0.77024 0.95923 1.02322 0.85390 1.22201 1.04325 1.02233 0.93437 1.48211 1.04793 1.54099 1.06201 1.22424 0.89861 1.00084 0.95255 1.21430 0.97413 1.16683 0.95271 1.23833 0.94299 0.99955 0.96149 1.77338 1.04796 1.23504 1.05688 1.42830 1.16839 1.67713 1.11661 1.19059 0.90665 1.27624 1.00030 0.88705 1.24661 0.96389 1.00242 0.97499 1.69684 1.19438 1.41691 1.26840 0.86645 0.80942 0.77415 0.83949 1.21168 1.21820 1.20439 0.89333 0.94809 0.93846 0.92649 0.93519 0.91307 0.91757 0.75205 0.88560 0.90122 0.90969 0.81399 0.83659 0.80157 0.80562 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.11 5.61 -26.73 -0.15 -2.26 16 3 C 0.17 2.81 2.59 -67.93 -0.18 2.64 16 4 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 5 C 0.11 1.71 5.23 -4.04 -0.02 1.69 16 6 N -0.71 -10.32 5.28 -60.29 -0.32 -10.64 16 7 C 0.50 7.59 7.22 -10.99 -0.08 7.51 16 8 O -0.53 -10.12 16.42 5.56 0.09 -10.03 16 9 C 0.14 1.78 3.73 -69.08 -0.26 1.52 16 10 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 11 C -0.16 -1.67 8.73 37.16 0.32 -1.35 16 12 N -0.35 -4.90 3.02 -55.99 -0.17 -5.07 16 13 C 0.07 0.86 10.58 -17.23 -0.18 0.68 16 14 C -0.28 -3.21 10.80 -40.01 -0.43 -3.64 16 15 C 0.04 0.54 12.03 -17.37 -0.21 0.33 16 16 N -0.29 -4.38 12.58 30.63 0.39 -4.00 16 17 N -0.75 -15.04 4.31 -53.42 -0.23 -15.27 16 18 C -0.24 -5.98 8.23 -15.06 -0.12 -6.11 16 19 H 0.10 2.53 7.55 -52.49 -0.40 2.13 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -27.00 13.97 55.49 0.78 -26.23 16 22 Si 0.88 20.16 27.74 -169.99 -4.72 15.45 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -5.80 6.51 56.52 0.37 -5.43 16 26 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 5.76 7.56 -40.82 -0.31 5.45 16 34 H 0.10 0.99 7.56 -51.93 -0.39 0.60 16 35 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.07 0.73 7.16 -51.93 -0.37 0.36 16 37 H 0.17 1.65 7.26 -52.48 -0.38 1.27 16 38 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.18 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.36 7.36 5.66 -40.82 -0.23 7.13 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -31.97 339.86 -6.33 -38.30 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.21 Total: 13.43 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.06 Total: -1.07 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.44 Total: -61.20 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.72 Total: 15.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.97 -6.33 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318502187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.446 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds