Wall clock time and date at job start Tue Mar 31 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35372 * 127.24619 * 2 1 4 4 N 1.35032 * 107.22553 * 179.85223 * 3 2 1 5 5 C 1.46502 * 124.88312 * 180.14677 * 4 3 2 6 6 N 1.28471 * 110.23234 * 0.42768 * 4 3 2 7 7 C 1.31804 * 110.07276 * 359.73682 * 6 4 3 8 8 C 1.47707 * 126.52111 * 179.97438 * 7 6 4 9 9 O 1.21570 * 120.00601 * 175.02722 * 8 7 6 10 10 N 1.34776 * 119.99754 * 355.03237 * 8 7 6 11 11 C 1.46500 * 120.00004 * 2.71375 * 10 8 7 12 12 C 1.46508 * 120.00286 * 182.70967 * 10 8 7 13 13 H 1.09001 * 109.46570 * 0.02562 * 12 10 8 14 14 C 1.52992 * 109.46872 * 119.99806 * 12 10 8 15 15 C 1.52993 * 109.47375 * 240.00438 * 12 10 8 16 16 N 1.46502 * 109.47619 * 54.99721 * 15 12 10 17 17 C 1.36932 * 120.00371 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99721 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99897 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00081 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99687 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46940 * 59.99751 * 21 19 17 23 23 H 1.48497 * 109.46836 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47300 * 300.00153 * 21 19 17 25 25 H 1.08998 * 109.46981 * 269.68890 * 1 2 3 26 26 H 1.08996 * 109.46907 * 149.68673 * 1 2 3 27 27 H 1.09004 * 109.47156 * 29.68301 * 1 2 3 28 28 H 1.07998 * 126.38553 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47128 * 270.29604 * 5 4 3 30 30 H 1.08997 * 109.47087 * 30.30143 * 5 4 3 31 31 H 1.09002 * 109.46793 * 150.29913 * 5 4 3 32 32 H 1.09004 * 109.46997 * 83.91260 * 11 10 8 33 33 H 1.09007 * 109.46962 * 203.90441 * 11 10 8 34 34 H 1.08994 * 109.47187 * 323.90582 * 11 10 8 35 35 H 1.09001 * 109.47150 * 60.00811 * 14 12 10 36 36 H 1.09010 * 109.47067 * 180.02562 * 14 12 10 37 37 H 1.09000 * 109.47962 * 300.00010 * 14 12 10 38 38 H 1.08997 * 109.47285 * 174.99880 * 15 12 10 39 39 H 1.09002 * 109.47028 * 294.99760 * 15 12 10 40 40 H 0.97002 * 119.99321 * 0.02562 * 16 15 12 41 41 H 0.96997 * 119.99860 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 0.0033 5 6 4.7937 1.4576 0.0076 6 7 3.5998 -0.6694 -0.0037 7 6 2.3635 -1.1263 -0.0062 8 6 1.9506 -2.5445 -0.0144 9 8 0.7736 -2.8355 0.0753 10 7 2.8786 -3.5159 -0.1213 11 6 4.3009 -3.1681 -0.1694 12 6 2.4652 -4.9198 -0.1893 13 1 1.3780 -4.9811 -0.1400 14 6 2.9509 -5.5313 -1.5049 15 6 3.0735 -5.6881 0.9856 16 7 2.7053 -5.0310 2.2421 17 6 3.1391 -5.5433 3.4355 18 1 3.7525 -6.4321 3.4505 19 6 2.7897 -4.9208 4.6261 20 7 2.0419 -3.8380 4.6078 21 14 3.3810 -5.6202 6.2542 22 1 4.8658 -5.6321 6.2778 23 1 2.8755 -4.7776 7.3676 24 1 2.8725 -7.0065 6.4114 25 1 -0.3633 -0.0056 1.0276 26 1 -0.3633 -0.8871 -0.5187 27 1 -0.3634 0.8928 -0.5089 28 1 2.0220 2.1138 -0.0004 29 1 5.0909 1.6718 -1.0191 30 1 4.5793 2.3920 0.5262 31 1 5.6027 0.9357 0.5187 32 1 4.6783 -3.0404 0.8452 33 1 4.8537 -3.9665 -0.6647 34 1 4.4292 -2.2389 -0.7245 35 1 4.0380 -5.4700 -1.5546 36 1 2.6428 -6.5757 -1.5557 37 1 2.5174 -4.9840 -2.3420 38 1 2.6955 -6.7105 0.9859 39 1 4.1590 -5.7022 0.8874 40 1 2.1541 -4.2329 2.2285 41 1 1.7975 -3.4033 5.4397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319455988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:03 Heat of formation + Delta-G solvation = 44.653361 kcal Electronic energy + Delta-G solvation = -22837.000987 eV Core-core repulsion = 19560.874322 eV Total energy + Delta-G solvation = -3276.126665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -43.59644 -40.75323 -37.83853 -35.86649 -34.82184 -33.77362 -32.63448 -31.66755 -28.99786 -27.97221 -27.50987 -27.23634 -24.62983 -23.84878 -21.90441 -21.36857 -20.15159 -19.11759 -18.19678 -17.70357 -17.30457 -16.98684 -16.56514 -16.22114 -15.40609 -15.16590 -14.93892 -14.59303 -14.31702 -14.26995 -13.97804 -13.74607 -13.71611 -13.56131 -13.28925 -13.19247 -13.18079 -12.99019 -12.75882 -12.66402 -12.53084 -12.19228 -11.83487 -11.73853 -11.50132 -11.00520 -10.87280 -10.13734 -9.75572 -9.45595 -9.00947 -7.93282 -5.24205 0.60412 1.20296 1.42407 1.47656 1.53647 1.65371 2.13419 2.42734 2.54627 3.37318 3.38360 3.74598 3.92569 4.02114 4.11150 4.31876 4.35504 4.38318 4.45600 4.47074 4.51164 4.64405 4.72102 4.75362 4.79808 4.86215 4.89315 4.90974 5.01622 5.09204 5.14819 5.22914 5.31603 5.45418 5.54504 5.71610 6.01073 6.25161 6.42485 6.91772 7.24142 7.31063 8.08329 8.32102 9.29760 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.005788 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.459007 B = 4836.467961 C = 5553.916431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.179 4.179 3 C -0.004 4.004 4 N -0.283 5.283 5 C 0.077 3.923 6 N -0.268 5.268 7 C -0.046 4.046 8 C 0.589 3.411 9 O -0.574 6.574 10 N -0.586 5.586 11 C 0.090 3.910 12 C 0.127 3.873 13 H 0.071 0.929 14 C -0.141 4.141 15 C 0.143 3.857 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.080 0.920 19 C -0.081 4.081 20 N -0.971 5.971 21 Si 0.980 3.020 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.228 0.772 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.370 0.630 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 12.268 -15.502 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.189 4.189 3 C -0.147 4.147 4 N -0.071 5.071 5 C -0.061 4.061 6 N -0.106 5.106 7 C -0.204 4.204 8 C 0.377 3.623 9 O -0.453 6.453 10 N -0.317 5.317 11 C -0.053 4.053 12 C 0.024 3.976 13 H 0.089 0.911 14 C -0.199 4.199 15 C 0.016 3.984 16 N -0.385 5.385 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.273 4.273 20 N -0.622 5.622 21 Si 0.808 3.192 22 H -0.200 1.200 23 H -0.223 1.223 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.244 0.756 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.201 0.799 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.470 11.700 -15.364 20.706 hybrid contribution -0.894 0.047 1.395 1.657 sum 6.575 11.748 -13.969 19.400 Atomic orbital electron populations 1.20068 0.88042 1.02952 1.01704 1.20712 0.98216 0.91062 1.08958 1.23163 0.82911 1.01417 1.07213 1.45968 1.08702 1.03449 1.48946 1.22616 0.83149 0.94097 1.06258 1.73610 1.22001 0.95021 1.19963 1.21775 0.90992 0.94540 1.13069 1.17417 0.85006 0.84078 0.75778 1.90695 1.18694 1.83223 1.52661 1.47633 1.07644 1.05717 1.70716 1.21988 0.79264 1.02774 1.01263 1.21380 0.99973 0.79860 0.96397 0.91056 1.21978 1.02526 1.01613 0.93815 1.21211 0.97364 0.94850 0.85000 1.42536 1.62146 1.32347 1.01490 1.19655 1.25025 1.07704 0.85364 0.90236 1.25687 1.01482 0.98536 1.01548 1.69910 1.43165 1.22684 1.26427 0.85127 0.77984 0.77357 0.78758 1.20042 1.22336 1.20174 0.92839 0.92894 0.88527 0.75556 0.87366 0.85543 0.88816 0.95309 0.89260 0.88285 0.90531 0.89534 0.91835 0.94740 0.94886 0.79888 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.10 9.89 71.24 0.70 -1.40 16 2 C -0.18 -5.78 6.25 -19.72 -0.12 -5.90 16 3 C 0.00 -0.09 11.40 83.54 0.95 0.87 16 4 N -0.28 -6.60 3.70 -369.44 -1.37 -7.97 16 5 C 0.08 0.83 11.31 127.77 1.44 2.28 16 6 N -0.27 -8.72 8.49 -48.18 -0.41 -9.13 16 7 C -0.05 -1.78 6.83 42.46 0.29 -1.49 16 8 C 0.59 26.19 7.39 86.75 0.64 26.83 16 9 O -0.57 -28.97 14.51 -3.94 -0.06 -29.03 16 10 N -0.59 -23.20 2.24 -826.16 -1.85 -25.05 16 11 C 0.09 3.01 8.73 127.77 1.12 4.12 16 12 C 0.13 4.86 2.79 44.98 0.13 4.98 16 13 H 0.07 3.14 6.90 -2.39 -0.02 3.12 16 14 C -0.14 -3.73 9.18 71.98 0.66 -3.07 16 15 C 0.14 6.23 5.56 86.38 0.48 6.71 16 16 N -0.74 -42.06 5.43 -343.46 -1.87 -43.93 16 17 C -0.25 -14.74 9.99 84.04 0.84 -13.90 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.08 -4.97 5.50 84.86 0.47 -4.51 16 20 N -0.97 -64.85 13.06 21.65 0.28 -64.57 16 21 Si 0.98 48.77 29.55 68.60 2.03 50.80 16 22 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.86 6.83 -2.39 -0.02 1.84 16 27 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.23 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.13 0.56 8.13 -2.39 -0.02 0.54 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.09 2.42 6.44 -2.38 -0.02 2.40 16 34 H 0.10 3.05 5.38 -2.39 -0.01 3.04 16 35 H 0.08 1.75 6.67 -2.39 -0.02 1.73 16 36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.03 1.36 7.84 -2.39 -0.02 1.35 16 40 H 0.37 23.38 7.07 -92.71 -0.66 22.72 16 41 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -86.44 337.70 4.73 -81.70 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.38 Total: 31.65 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.60 Total: 15.51 kcal Atomic # 7 Polarization: -145.43 SS G_CDS: -5.21 Total: -150.65 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -86.44 4.73 -81.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319455988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.358 kcal (2) G-P(sol) polarization free energy of solvation -86.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds