Wall clock time and date at job start Tue Mar 31 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30823 * 125.96311 * 2 1 4 4 C 1.33240 * 109.83187 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.53044 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.46681 * 14.99882 * 5 4 3 7 7 C 1.52995 * 109.47004 * 255.00122 * 5 4 3 8 8 N 1.46496 * 109.46851 * 134.99937 * 5 4 3 9 9 C 1.34774 * 119.99544 * 205.00060 * 8 5 4 10 10 O 1.21279 * 120.00472 * 0.02562 * 9 8 5 11 11 C 1.50706 * 120.00020 * 180.02562 * 9 8 5 12 12 C 1.52997 * 109.47238 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46947 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46891 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46994 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99838 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99810 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99856 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00262 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46945 * 90.00078 * 19 17 15 21 21 H 1.48497 * 109.47479 * 210.00219 * 19 17 15 22 22 H 1.48504 * 109.47204 * 330.00549 * 19 17 15 23 23 N 1.30712 * 108.94451 * 0.26548 * 4 3 2 24 24 N 1.34428 * 125.95790 * 179.97438 * 2 1 3 25 25 H 0.97005 * 126.82511 * 0.02562 * 24 2 1 26 26 H 1.08990 * 109.47398 * 89.99760 * 1 2 3 27 27 H 1.08996 * 109.47311 * 210.00365 * 1 2 3 28 28 H 1.09003 * 109.46775 * 329.99408 * 1 2 3 29 29 H 1.09007 * 109.47250 * 299.99628 * 7 5 4 30 30 H 1.09002 * 109.47248 * 59.99795 * 7 5 4 31 31 H 1.08997 * 109.47151 * 180.02562 * 7 5 4 32 32 H 0.96994 * 120.00700 * 25.00179 * 8 5 4 33 33 H 1.09001 * 109.46953 * 299.99667 * 11 9 8 34 34 H 1.09000 * 109.47318 * 59.99264 * 11 9 8 35 35 H 1.09001 * 109.46832 * 299.99686 * 12 11 9 36 36 H 1.09004 * 109.47261 * 59.99705 * 12 11 9 37 37 H 1.08992 * 109.47554 * 299.99696 * 13 12 11 38 38 H 1.08996 * 109.47261 * 60.00229 * 13 12 11 39 39 H 1.08998 * 109.47844 * 299.99997 * 14 13 12 40 40 H 1.09001 * 109.47248 * 60.00689 * 14 13 12 41 41 H 0.96999 * 119.99896 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0002 6 1 4.4064 2.6276 0.2654 7 6 5.3692 1.6461 -1.3930 8 7 5.7259 1.1610 0.9774 9 6 6.5918 2.0362 1.5257 10 8 6.5524 3.2067 1.2105 11 6 7.6092 1.5604 2.5306 12 6 8.4610 2.7440 2.9935 13 6 9.4934 2.2611 4.0141 14 6 10.3457 3.4446 4.4765 15 6 11.3623 2.9690 5.4823 16 1 11.3972 1.9268 5.7632 17 6 12.2476 3.8645 6.0438 18 7 13.1351 3.4494 6.9212 19 14 12.1877 5.6670 5.5573 20 1 11.2630 6.3939 6.4639 21 1 13.5476 6.2539 5.6631 22 1 11.7045 5.7863 4.1582 23 7 3.6194 -0.6168 -0.0048 24 7 2.2964 -1.0881 0.0005 25 1 2.0093 -2.0147 0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 5.7001 0.6419 -1.6582 30 1 4.6336 1.9901 -2.1201 31 1 6.2244 2.3218 -1.3932 32 1 5.7573 0.2250 1.2298 33 1 7.0966 1.1249 3.3883 34 1 8.2504 0.8087 2.0704 35 1 8.9737 3.1800 2.1360 36 1 7.8195 3.4955 3.4538 37 1 8.9806 1.8254 4.8714 38 1 10.1351 1.5096 3.5541 39 1 10.8587 3.8801 3.6190 40 1 9.7044 4.1965 4.9365 41 1 13.7582 4.0793 7.3159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324058204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:38 Heat of formation + Delta-G solvation = -6.742856 kcal Electronic energy + Delta-G solvation = -20756.881645 eV Core-core repulsion = 17478.526273 eV Total energy + Delta-G solvation = -3278.355372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31885 -40.87514 -37.20708 -36.48090 -34.59979 -33.82952 -33.45069 -32.23566 -31.05653 -28.92187 -27.65659 -25.60647 -23.85728 -22.34464 -21.73314 -21.35478 -21.23242 -19.04675 -18.84137 -17.89751 -17.33488 -16.96606 -16.69221 -16.31098 -15.64857 -15.31503 -15.16303 -14.84304 -14.62062 -14.35909 -13.85875 -13.76199 -13.67347 -13.54698 -13.46598 -13.17358 -12.84864 -12.79633 -12.52982 -12.31948 -12.05826 -11.74286 -11.50876 -11.33216 -11.27633 -11.25170 -11.20914 -10.87102 -10.74947 -10.59166 -10.27123 -8.28714 -6.31653 0.44616 1.35939 1.37313 1.50474 1.53758 1.58830 1.67277 2.12091 2.37052 2.87089 3.06620 3.47988 3.75624 3.82115 4.03784 4.09231 4.17484 4.20014 4.53475 4.63607 4.66003 4.68976 4.69835 4.78032 4.82421 4.88730 4.98416 5.09729 5.10823 5.16689 5.21908 5.23871 5.27807 5.36091 5.62296 5.67606 5.69964 6.13637 6.30666 6.45365 6.76246 6.95557 7.19519 7.33013 8.87841 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039517 B = 0.002397 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.385205 B =11676.573225 C =11873.291830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.292 3.708 3 N -0.571 5.571 4 C 0.215 3.785 5 C 0.238 3.762 6 H 0.095 0.905 7 C -0.147 4.147 8 N -0.715 5.715 9 C 0.519 3.481 10 O -0.575 6.575 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.094 4.094 14 C -0.017 4.017 15 C -0.530 4.530 16 H 0.036 0.964 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.251 1.251 23 N -0.322 5.322 24 N -0.469 5.469 25 H 0.458 0.542 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.536 -11.849 -18.697 36.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.014 3.986 3 N -0.302 5.302 4 C -0.069 4.069 5 C 0.131 3.869 6 H 0.113 0.887 7 C -0.207 4.207 8 N -0.369 5.369 9 C 0.308 3.692 10 O -0.454 6.454 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.132 4.132 14 C -0.055 4.055 15 C -0.568 4.568 16 H 0.055 0.945 17 C -0.195 4.195 18 N -0.592 5.592 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.175 1.175 23 N -0.153 5.153 24 N -0.190 5.190 25 H 0.308 0.692 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.874 -11.009 -18.822 36.183 hybrid contribution 0.211 -0.280 0.371 0.511 sum -28.662 -11.289 -18.452 35.909 Atomic orbital electron populations 1.20680 0.79945 1.06634 1.06254 1.25258 0.98302 0.81802 0.93246 1.70336 1.01373 1.31602 1.26865 1.24063 0.93436 0.90370 0.99003 1.18913 0.82507 0.94740 0.90773 0.88747 1.22059 1.01436 1.03163 0.94003 1.45964 1.34190 1.12792 1.43975 1.21158 0.81525 0.85339 0.81204 1.90695 1.72214 1.19095 1.63383 1.21685 0.96566 1.00258 0.98467 1.21286 0.96704 0.97027 0.98490 1.21340 0.96335 0.97833 0.97674 1.19583 0.94696 0.96083 0.95120 1.21549 1.16060 0.95581 1.23593 0.94534 1.26015 0.94708 1.04099 0.94639 1.70064 1.21307 1.36974 1.30831 0.85678 0.77609 0.79309 0.80198 1.19240 1.20733 1.17514 1.77832 0.98908 1.11601 1.26918 1.47940 1.03075 1.11154 1.56790 0.69227 0.87017 0.86722 0.88316 0.91215 0.90557 0.91631 0.74872 0.86866 0.86416 0.92636 0.92831 0.92565 0.92423 0.96654 0.96870 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.51 71.24 0.75 0.61 16 2 C 0.29 3.58 8.24 138.23 1.14 4.72 16 3 N -0.57 -11.81 11.19 -179.72 -2.01 -13.82 16 4 C 0.21 4.56 6.94 138.63 0.96 5.53 16 5 C 0.24 5.33 3.12 44.25 0.14 5.46 16 6 H 0.09 2.51 7.58 -2.39 -0.02 2.49 16 7 C -0.15 -2.89 9.47 71.98 0.68 -2.21 16 8 N -0.72 -15.40 5.07 -446.10 -2.26 -17.66 16 9 C 0.52 13.98 7.79 87.66 0.68 14.66 16 10 O -0.58 -20.24 15.64 -3.02 -0.05 -20.28 16 11 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 12 C -0.10 -3.21 4.50 30.59 0.14 -3.08 16 13 C -0.09 -3.69 5.15 30.59 0.16 -3.53 16 14 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 15 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 16 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 17 C 0.00 0.12 5.47 84.65 0.46 0.58 16 18 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 19 Si 0.95 46.52 27.47 68.60 1.88 48.41 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 23 N -0.32 -5.95 12.47 -51.33 -0.64 -6.59 16 24 N -0.47 -5.22 7.45 -50.71 -0.38 -5.59 16 25 H 0.46 1.39 8.96 -213.09 -1.91 -0.52 16 26 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.41 7.26 8.33 -92.71 -0.77 6.48 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 36 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 40 H 0.01 0.63 7.57 -2.39 -0.02 0.62 16 41 H 0.27 15.93 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -81.62 348.15 0.80 -80.82 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -1.70 Total: 7.97 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.65 Total: -12.38 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.99 Total: -104.53 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.41 kcal Total: -81.62 0.80 -80.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324058204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.076 kcal (2) G-P(sol) polarization free energy of solvation -81.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds