Wall clock time and date at job start Tue Mar 31 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50707 * 109.46831 * 2 1 4 4 N 1.30509 * 126.34443 * 270.04062 * 3 2 1 5 5 N 1.28600 * 109.67329 * 179.97438 * 4 3 2 6 6 C 1.30520 * 109.66925 * 359.72354 * 5 4 3 7 7 N 1.35492 * 107.30829 * 0.43638 * 6 5 4 8 8 C 1.46498 * 126.97920 * 179.83425 * 7 6 5 9 9 C 1.53001 * 109.47425 * 264.68561 * 8 7 6 10 10 N 1.46493 * 109.47084 * 179.97438 * 9 8 7 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 359.72839 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72721 * 11 10 9 14 14 C 1.53001 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.46978 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00135 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00095 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46830 * 90.00352 * 20 18 16 22 22 H 1.48499 * 109.47130 * 209.99979 * 20 18 16 23 23 H 1.48494 * 109.47302 * 330.00172 * 20 18 16 24 24 H 1.09003 * 109.47117 * 299.99784 * 1 2 3 25 25 H 1.09000 * 109.46976 * 59.99801 * 1 2 3 26 26 H 1.08993 * 109.46840 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46979 * 239.99960 * 2 1 3 28 28 H 1.08999 * 109.47207 * 119.99698 * 2 1 3 29 29 H 1.08004 * 126.34452 * 180.30033 * 6 5 4 30 30 H 1.09007 * 109.47027 * 144.69082 * 8 7 6 31 31 H 1.08993 * 109.47264 * 24.69140 * 8 7 6 32 32 H 1.09007 * 109.46593 * 60.00255 * 9 8 7 33 33 H 1.09006 * 109.47216 * 300.00713 * 9 8 7 34 34 H 0.97000 * 120.00740 * 359.72857 * 10 9 8 35 35 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 36 36 H 1.09002 * 109.47054 * 60.00213 * 13 11 10 37 37 H 1.09000 * 109.47339 * 299.99895 * 14 13 11 38 38 H 1.09002 * 109.46926 * 60.00175 * 14 13 11 39 39 H 1.09000 * 109.46966 * 300.00313 * 15 14 13 40 40 H 1.09002 * 109.46807 * 60.00291 * 15 14 13 41 41 H 0.97004 * 120.00461 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2894 2.1504 -1.0512 5 7 2.6998 3.3120 -0.6823 6 6 2.7174 3.3781 0.6211 7 7 2.3002 2.1779 1.0914 8 6 2.1609 1.7814 2.4948 9 6 3.4273 1.0513 2.9466 10 7 3.2882 0.6553 4.3501 11 6 4.2883 -0.0056 4.9662 12 8 5.3014 -0.2769 4.3570 13 6 4.1478 -0.4075 6.4117 14 6 5.4136 -1.1388 6.8632 15 6 5.2712 -1.5463 8.3310 16 6 6.5178 -2.2671 8.7754 17 1 7.3305 -2.4190 8.0806 18 6 6.6211 -2.7318 10.0694 19 7 5.6316 -2.5464 10.9157 20 14 8.1660 -3.6259 10.6201 21 1 9.1409 -2.6437 11.1587 22 1 7.8186 -4.6092 11.6774 23 1 8.7666 -4.3356 9.4622 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.0124 4.2308 1.2148 30 1 1.3019 1.1188 2.6016 31 1 2.0139 2.6688 3.1102 32 1 4.2862 1.7138 2.8398 33 1 3.5742 0.1637 2.3310 34 1 2.4781 0.8725 4.8375 35 1 4.0041 0.4827 7.0240 36 1 3.2878 -1.0680 6.5232 37 1 5.5569 -2.0291 6.2509 38 1 6.2738 -0.4787 6.7516 39 1 5.1281 -0.6558 8.9431 40 1 4.4109 -2.2062 8.4430 41 1 5.7044 -2.8730 11.8262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326727829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:09 Heat of formation + Delta-G solvation = -8.777766 kcal Electronic energy + Delta-G solvation = -20806.684970 eV Core-core repulsion = 17528.241357 eV Total energy + Delta-G solvation = -3278.443613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.17439 -40.80514 -37.45514 -36.11238 -35.37198 -34.74189 -34.00692 -30.90184 -30.53997 -29.25439 -26.14583 -25.23247 -24.31544 -23.25736 -22.32524 -21.65940 -21.09383 -18.69723 -18.21511 -17.74985 -17.25703 -17.04295 -16.52803 -16.45492 -16.33418 -15.95736 -15.36016 -14.88356 -14.79876 -14.61313 -14.24909 -13.76226 -13.70545 -13.47730 -13.15593 -12.87387 -12.71650 -12.58590 -12.51247 -12.41045 -12.38502 -12.15558 -11.53962 -11.47143 -11.33873 -11.32002 -11.25699 -10.80857 -10.53788 -10.26915 -10.21368 -8.20333 -6.29661 0.77365 1.32818 1.40049 1.40294 1.51882 1.62944 1.84290 2.27711 2.42253 3.12932 3.30066 3.51477 3.55768 3.72323 3.92936 3.97621 4.16713 4.25066 4.26110 4.28291 4.32880 4.44883 4.54020 4.71235 4.84696 4.86375 4.98232 5.00147 5.10686 5.13275 5.14921 5.19923 5.30566 5.32255 5.55511 5.77586 5.88428 5.89405 6.28482 6.50744 6.86162 7.24943 7.39037 7.69625 8.90926 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038635 B = 0.002333 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.554780 B =11999.678275 C =12161.337212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.184 3.816 4 N -0.345 5.345 5 N -0.349 5.349 6 C 0.164 3.836 7 N -0.468 5.468 8 C 0.102 3.898 9 C 0.108 3.892 10 N -0.711 5.711 11 C 0.519 3.481 12 O -0.586 6.586 13 C -0.129 4.129 14 C -0.085 4.085 15 C 0.026 3.974 16 C -0.548 4.548 17 H 0.049 0.951 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.257 0.743 30 H 0.130 0.870 31 H 0.143 0.857 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.424 0.576 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.002 0.998 40 H 0.003 0.997 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 9.768 -15.992 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.085 4.085 4 N -0.184 5.184 5 N -0.187 5.187 6 C -0.125 4.125 7 N -0.159 5.159 8 C -0.020 4.020 9 C -0.018 4.018 10 N -0.367 5.367 11 C 0.307 3.693 12 O -0.465 6.465 13 C -0.168 4.168 14 C -0.123 4.123 15 C -0.011 4.011 16 C -0.586 4.586 17 H 0.067 0.933 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.194 1.194 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.273 0.727 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.263 0.737 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.408 9.979 -17.720 24.923 hybrid contribution 0.665 -0.623 1.868 2.078 sum -13.743 9.356 -15.852 22.971 Atomic orbital electron populations 1.21713 0.92151 1.03791 1.02275 1.20220 0.97694 0.84700 1.05507 1.25441 1.01732 0.98596 0.82761 1.74169 1.18386 0.99853 1.25950 1.74161 1.19449 1.13690 1.11375 1.27219 1.00930 0.91478 0.92869 1.46282 1.49086 1.11749 1.08798 1.22258 0.98496 1.04193 0.77101 1.21479 0.98060 0.99404 0.82813 1.45549 1.20489 1.58785 1.11832 1.21094 0.82270 0.76236 0.89710 1.90705 1.31492 1.56112 1.68182 1.21674 1.00788 1.03283 0.91071 1.21176 0.96191 0.98482 0.96484 1.19021 0.95450 0.95127 0.91532 1.21707 1.03301 1.36851 0.96736 0.93258 1.25865 0.99670 0.96960 0.96881 1.70049 1.33335 1.47781 1.05643 0.85548 0.79523 0.78548 0.78058 1.19792 1.20315 1.19413 0.91768 0.93263 0.89448 0.88523 0.88190 0.72744 0.85168 0.83929 0.92324 0.92367 0.73722 0.86892 0.86826 0.94271 0.94334 0.97913 0.97860 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.90 71.98 0.71 -0.45 16 2 C -0.04 -0.47 6.20 29.85 0.18 -0.28 16 3 C 0.18 3.24 7.28 137.98 1.01 4.25 16 4 N -0.34 -8.92 12.21 -50.15 -0.61 -9.54 16 5 N -0.35 -8.72 12.21 -59.99 -0.73 -9.45 16 6 C 0.16 2.46 12.74 180.11 2.29 4.76 16 7 N -0.47 -5.85 2.75 -518.71 -1.42 -7.27 16 8 C 0.10 0.48 5.93 86.38 0.51 0.99 16 9 C 0.11 1.37 6.00 86.38 0.52 1.89 16 10 N -0.71 -9.74 5.56 -463.05 -2.57 -12.31 16 11 C 0.52 13.47 7.83 87.65 0.69 14.16 16 12 O -0.59 -21.60 15.98 -3.04 -0.05 -21.65 16 13 C -0.13 -3.51 5.70 29.85 0.17 -3.34 16 14 C -0.09 -3.50 4.44 30.59 0.14 -3.36 16 15 C 0.03 1.30 4.97 29.85 0.15 1.45 16 16 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 17 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 18 C 0.00 0.25 5.46 84.66 0.46 0.71 16 19 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 20 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 0.81 7.62 -2.39 -0.02 0.79 16 29 H 0.26 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.13 0.04 8.02 -2.38 -0.02 0.02 16 31 H 0.14 -0.20 8.14 -2.39 -0.02 -0.21 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.98 7.82 -2.38 -0.02 0.96 16 34 H 0.42 2.20 8.47 -92.71 -0.79 1.42 16 35 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -84.58 352.08 4.21 -80.36 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: 0.23 Total: -1.38 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 7.06 Total: -10.46 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -5.06 Total: -93.28 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -84.58 4.21 -80.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326727829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.585 kcal (2) G-P(sol) polarization free energy of solvation -84.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds