Wall clock time and date at job start Tue Mar 31 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 N 1.46502 * 109.47167 * 119.99763 * 2 1 3 5 5 N 1.40447 * 126.82215 * 296.24959 * 4 2 1 6 6 C 1.30718 * 106.78946 * 180.25539 * 5 4 2 7 7 N 1.33238 * 108.94439 * 359.74694 * 6 5 4 8 8 C 1.30829 * 109.83179 * 359.97438 * 7 6 5 9 9 C 1.50699 * 125.95915 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47370 * 275.91225 * 9 8 7 11 11 C 1.47444 * 110.99719 * 64.79557 * 10 9 8 12 12 C 1.54323 * 107.23123 * 236.74186 * 11 10 9 13 13 C 1.55143 * 103.17737 * 337.62639 * 12 11 10 14 14 O 1.42891 * 110.99164 * 277.65381 * 13 12 11 15 15 C 1.50698 * 110.98909 * 153.82644 * 13 12 11 16 16 H 1.07991 * 120.00432 * 241.45306 * 15 13 12 17 17 C 1.37884 * 119.99358 * 61.46293 * 15 13 12 18 18 N 1.31510 * 120.00067 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99587 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47284 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47098 * 119.99719 * 19 17 15 22 22 H 1.48501 * 109.46836 * 239.99712 * 19 17 15 23 23 C 1.47839 * 110.99973 * 303.95211 * 10 9 8 24 24 H 1.08994 * 109.47128 * 299.99886 * 1 2 3 25 25 H 1.09003 * 109.46985 * 60.00221 * 1 2 3 26 26 H 1.09004 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47028 * 239.99574 * 2 1 3 28 28 H 1.08996 * 109.46979 * 294.87384 * 3 2 1 29 29 H 1.08997 * 109.47231 * 54.87896 * 3 2 1 30 30 H 1.09002 * 109.47081 * 174.87360 * 3 2 1 31 31 H 1.08002 * 125.52553 * 179.78453 * 6 5 4 32 32 H 1.09004 * 109.47004 * 155.91526 * 9 8 7 33 33 H 1.08998 * 109.47333 * 35.91710 * 9 8 7 34 34 H 1.09002 * 109.89310 * 117.33936 * 11 10 9 35 35 H 1.09000 * 109.89362 * 356.14700 * 11 10 9 36 36 H 1.09004 * 110.70672 * 96.10005 * 12 11 10 37 37 H 1.08997 * 110.70565 * 219.15813 * 12 11 10 38 38 H 0.96704 * 113.99643 * 298.54162 * 14 13 12 39 39 H 0.97002 * 119.99648 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.37557 * 265.18815 * 23 10 9 41 41 H 1.08996 * 110.37576 * 27.53189 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.8302 -0.2969 2.5312 6 6 2.4310 -1.1877 3.2758 7 7 2.9763 -2.1134 2.4878 8 6 2.7323 -1.8289 1.2343 9 6 3.1804 -2.6328 0.0410 10 7 4.5526 -2.2514 -0.3191 11 6 5.4992 -2.6094 0.7531 12 6 6.2315 -1.3157 1.1673 13 6 6.0722 -0.4049 -0.0785 14 8 7.0569 -0.7130 -1.0671 15 6 6.1331 1.0510 0.3058 16 1 5.2845 1.6936 0.1236 17 6 7.2725 1.5626 0.8901 18 7 8.3057 0.7800 1.1123 19 14 7.3482 3.3674 1.3659 20 1 6.0655 4.0269 1.0124 21 1 7.5790 3.4845 2.8282 22 1 8.4607 4.0257 0.6349 23 6 4.6504 -0.7972 -0.5673 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.7536 1.9291 -0.9323 29 1 1.6038 1.9821 0.8405 30 1 3.1262 1.4439 0.0918 31 1 2.4773 -1.1755 4.3547 32 1 2.5159 -2.4357 -0.8002 33 1 3.1509 -3.6945 0.2863 34 1 6.2184 -3.3406 0.3841 35 1 4.9566 -3.0175 1.6059 36 1 5.7550 -0.8648 2.0378 37 1 7.2843 -1.5157 1.3664 38 1 7.9675 -0.5791 -0.7703 39 1 9.1071 1.1399 1.5236 40 1 4.5436 -0.5858 -1.6313 41 1 3.8919 -0.2628 0.0047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326796721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:55 Heat of formation + Delta-G solvation = 28.313561 kcal Electronic energy + Delta-G solvation = -23978.307015 eV Core-core repulsion = 20701.471803 eV Total energy + Delta-G solvation = -3276.835212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.22571 -40.06032 -37.15841 -36.69583 -34.21806 -33.04743 -31.93821 -30.86667 -29.96468 -28.24666 -27.62598 -25.88305 -24.44306 -22.42266 -21.91900 -21.45215 -20.55856 -19.12693 -18.25571 -17.19040 -16.95877 -16.77247 -16.03397 -15.89713 -15.65081 -15.41008 -15.21465 -14.47538 -14.30652 -14.13938 -13.87674 -13.73467 -13.38584 -13.19393 -13.17855 -13.05827 -12.82976 -12.70178 -12.47529 -12.37751 -12.28690 -12.11875 -12.03142 -11.72004 -11.15329 -10.92698 -10.68499 -10.63950 -10.49784 -10.09855 -9.40828 -8.26374 -6.40771 0.65379 1.31110 1.34553 1.38359 1.43802 1.99169 2.31486 2.95881 3.01237 3.29006 3.41085 3.81373 3.88515 3.90296 3.95685 4.02235 4.06401 4.25064 4.45326 4.51353 4.58385 4.62720 4.72319 4.75904 4.76732 4.84434 4.88966 5.05171 5.15176 5.19678 5.25259 5.38222 5.45739 5.51237 5.56421 5.75063 5.84051 5.92312 6.07306 6.14920 6.64221 7.15958 7.30120 7.41474 8.79173 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.007596 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.151166 B = 3685.231833 C = 4268.324550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 C -0.162 4.162 4 N -0.361 5.361 5 N -0.339 5.339 6 C 0.181 3.819 7 N -0.559 5.559 8 C 0.242 3.758 9 C 0.121 3.879 10 N -0.505 5.505 11 C 0.044 3.956 12 C -0.125 4.125 13 C 0.238 3.762 14 O -0.586 6.586 15 C -0.552 4.552 16 H 0.051 0.949 17 C 0.031 3.969 18 N -0.909 5.909 19 Si 0.950 3.050 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.050 3.950 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.236 0.764 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.073 0.927 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 -3.801 -2.146 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.039 3.961 3 C -0.220 4.220 4 N -0.154 5.154 5 N -0.167 5.167 6 C -0.121 4.121 7 N -0.288 5.288 8 C -0.036 4.036 9 C -0.010 4.010 10 N -0.227 5.227 11 C -0.084 4.084 12 C -0.164 4.164 13 C 0.198 3.802 14 O -0.393 6.393 15 C -0.591 4.591 16 H 0.069 0.931 17 C -0.170 4.170 18 N -0.548 5.548 19 Si 0.776 3.224 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.077 4.077 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.252 0.748 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.308 -3.837 -2.584 15.037 hybrid contribution 0.969 1.720 1.711 2.613 sum -13.339 -2.116 -0.873 13.534 Atomic orbital electron populations 1.22077 0.90877 1.03356 1.04202 1.21798 0.97195 0.94017 0.83134 1.22191 1.00918 0.94651 1.04194 1.50797 1.39841 1.18693 1.06020 1.77827 1.26596 1.24379 0.87870 1.26418 0.94565 0.88887 1.02235 1.70409 1.27065 1.30823 1.00462 1.25813 0.92535 0.88503 0.96724 1.21566 0.90372 0.99401 0.89708 1.63925 1.03632 1.15970 1.39223 1.22860 0.95151 0.97403 0.92952 1.22905 0.99175 0.95665 0.98652 1.19809 0.85201 0.91160 0.84036 1.86116 1.19157 1.90698 1.43314 1.21743 1.00578 0.95954 1.40782 0.93100 1.25631 0.95317 1.01567 0.94447 1.69825 1.04813 1.36543 1.43651 0.85632 0.78257 0.80787 0.77732 1.19567 1.20895 1.19965 1.23303 0.97019 0.86837 1.00581 0.92580 0.87617 0.91583 0.86263 0.87750 0.92236 0.94120 0.74837 0.86030 0.85760 0.91077 0.90935 0.95727 0.92995 0.78005 0.92295 0.90904 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.51 71.98 0.68 -1.93 16 2 C 0.14 3.36 2.63 44.99 0.12 3.47 16 3 C -0.16 -4.35 9.23 71.98 0.66 -3.69 16 4 N -0.36 -11.14 2.73 -318.05 -0.87 -12.00 16 5 N -0.34 -11.47 12.58 -61.24 -0.77 -12.24 16 6 C 0.18 5.94 13.03 180.76 2.36 8.29 16 7 N -0.56 -19.46 9.93 -191.78 -1.90 -21.37 16 8 C 0.24 7.78 5.57 138.23 0.77 8.55 16 9 C 0.12 3.33 5.51 85.56 0.47 3.80 16 10 N -0.51 -18.11 5.41 -889.08 -4.81 -22.92 16 11 C 0.04 1.74 6.43 86.65 0.56 2.29 16 12 C -0.12 -6.05 5.36 31.78 0.17 -5.88 16 13 C 0.24 11.86 0.88 -9.99 -0.01 11.85 16 14 O -0.59 -30.74 13.16 -148.98 -1.96 -32.70 16 15 C -0.55 -29.96 8.28 25.60 0.21 -29.75 16 16 H 0.05 2.76 6.94 -2.91 -0.02 2.74 16 17 C 0.03 1.68 5.29 84.66 0.45 2.13 16 18 N -0.91 -49.81 10.74 21.45 0.23 -49.58 16 19 Si 0.95 43.33 29.54 68.60 2.03 45.35 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.05 2.04 5.37 86.94 0.47 2.51 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.12 2.50 6.25 -2.39 -0.01 2.48 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.43 5.75 -2.39 -0.01 1.42 16 31 H 0.24 5.89 8.06 -2.91 -0.02 5.87 16 32 H 0.12 2.55 6.96 -2.39 -0.02 2.54 16 33 H 0.12 2.99 8.13 -2.39 -0.02 2.97 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.07 2.77 6.11 -2.39 -0.01 2.75 16 36 H 0.02 1.29 8.03 -2.39 -0.02 1.27 16 37 H 0.05 2.71 7.53 -2.39 -0.02 2.69 16 38 H 0.37 20.01 7.56 -74.05 -0.56 19.45 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 41 H 0.07 2.60 2.43 -2.39 -0.01 2.59 16 Total: -1.00 -65.29 321.57 -0.66 -65.95 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.49 Total: 37.84 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.91 Total: 1.66 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -8.13 Total: -118.11 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.96 Total: -32.70 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.29 -0.66 -65.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326796721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.268 kcal (2) G-P(sol) polarization free energy of solvation -65.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds