Wall clock time and date at job start Tue Mar 31 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30518 * 126.34487 * 2 1 4 4 N 1.28604 * 109.66680 * 179.97438 * 3 2 1 5 5 C 1.30519 * 109.67489 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.34573 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47021 * 89.97011 * 6 5 4 8 8 C 1.34778 * 119.99666 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00388 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99668 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47056 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47050 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47050 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46948 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00552 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99447 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00136 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99617 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47129 * 90.00029 * 18 16 14 20 20 H 1.48498 * 109.47169 * 209.99734 * 18 16 14 21 21 H 1.48495 * 109.47281 * 329.99922 * 18 16 14 22 22 N 1.35487 * 126.34300 * 179.97438 * 2 1 3 23 23 C 1.46500 * 126.98328 * 0.03570 * 22 2 1 24 24 H 1.08996 * 109.47221 * 90.02384 * 1 2 3 25 25 H 1.09000 * 109.47554 * 210.02742 * 1 2 3 26 26 H 1.09005 * 109.46969 * 330.02216 * 1 2 3 27 27 H 1.09000 * 109.46900 * 209.96980 * 6 5 4 28 28 H 1.08999 * 109.47044 * 329.97450 * 6 5 4 29 29 H 0.96998 * 120.00205 * 359.97438 * 7 6 5 30 30 H 1.09000 * 109.46933 * 299.99353 * 10 8 7 31 31 H 1.09004 * 109.47615 * 59.99769 * 10 8 7 32 32 H 1.09004 * 109.46745 * 300.00038 * 11 10 8 33 33 H 1.09004 * 109.46982 * 59.99522 * 11 10 8 34 34 H 1.09000 * 109.47213 * 299.99661 * 12 11 10 35 35 H 1.09004 * 109.47342 * 60.00081 * 12 11 10 36 36 H 1.09004 * 109.46745 * 300.00377 * 13 12 11 37 37 H 1.09004 * 109.46982 * 59.99861 * 13 12 11 38 38 H 0.97004 * 119.99517 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47418 * 270.00176 * 23 22 2 40 40 H 1.09007 * 109.47249 * 30.00075 * 23 22 2 41 41 H 1.09003 * 109.47398 * 149.99691 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6822 0.0005 5 6 3.5807 -0.6212 0.0004 6 6 4.8396 -1.4497 0.0014 7 7 5.2466 -1.7178 1.3830 8 6 6.3536 -2.4457 1.6301 9 8 7.0131 -2.8784 0.7088 10 6 6.7720 -2.7220 3.0512 11 6 8.0502 -3.5630 3.0523 12 6 8.4753 -3.8430 4.4951 13 6 9.7531 -4.6845 4.4961 14 6 10.1721 -4.9597 5.9173 15 1 9.5856 -4.5735 6.7377 16 6 11.3045 -5.7047 6.1701 17 7 12.0185 -6.1755 5.1710 18 14 11.8235 -6.0465 7.9317 19 1 11.1916 -7.3067 8.3983 20 1 13.3011 -6.1806 7.9952 21 1 11.3906 -4.9238 8.8019 22 7 2.3100 -1.0913 0.0005 23 6 1.8896 -2.4947 0.0004 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 4.6541 -2.3930 -0.5123 28 1 5.6327 -0.9061 -0.5120 29 1 4.7198 -1.3708 2.1198 30 1 6.9569 -1.7788 3.5654 31 1 5.9790 -3.2662 3.5643 32 1 7.8649 -4.5062 2.5381 33 1 8.8433 -3.0192 2.5391 34 1 8.6606 -2.8996 5.0088 35 1 7.6822 -4.3866 5.0086 36 1 9.5673 -5.6278 3.9825 37 1 10.5463 -4.1413 3.9825 38 1 12.8154 -6.6993 5.3490 39 1 1.7848 -2.8427 1.0280 40 1 0.9330 -2.5875 -0.5140 41 1 2.6382 -3.0982 -0.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327666466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:41 Heat of formation + Delta-G solvation = -9.527782 kcal Electronic energy + Delta-G solvation = -20680.407958 eV Core-core repulsion = 17401.931823 eV Total energy + Delta-G solvation = -3278.476136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.29564 -40.81152 -36.83100 -36.38227 -35.94590 -34.60419 -33.40805 -31.62820 -29.85844 -28.36334 -27.84802 -26.71874 -24.09363 -22.37119 -21.95302 -21.82013 -21.33956 -18.43023 -18.34522 -17.86904 -17.58135 -16.99019 -16.80992 -16.48158 -15.90371 -15.37867 -15.19151 -14.67028 -14.52309 -14.45167 -14.25047 -13.78950 -13.58115 -13.54226 -13.45440 -13.32072 -13.25353 -12.81040 -12.66155 -12.34118 -12.14331 -12.11871 -11.45980 -11.36719 -11.35624 -11.24168 -11.17234 -10.90932 -10.53900 -10.29907 -10.21018 -8.17890 -6.29732 0.53839 1.38319 1.40824 1.42972 1.54058 1.58703 1.60187 2.26777 2.42705 3.01465 3.14743 3.43886 3.71665 3.75736 3.80962 4.05744 4.16520 4.19898 4.31026 4.43280 4.61012 4.67415 4.68063 4.70110 4.74649 4.85981 4.89654 4.90363 4.93852 5.11923 5.18309 5.21489 5.34640 5.41052 5.58740 5.80156 5.80661 5.89711 6.26594 6.38440 6.88834 7.14638 7.39661 7.58419 8.94175 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042790 B = 0.002220 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.196035 B =12612.133681 C =12763.861579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.187 3.813 3 N -0.344 5.344 4 N -0.316 5.316 5 C 0.153 3.847 6 C 0.216 3.784 7 N -0.717 5.717 8 C 0.521 3.479 9 O -0.578 6.578 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.097 4.097 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.065 0.935 16 C -0.008 4.008 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.260 1.260 22 N -0.461 5.461 23 C 0.057 3.943 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.414 0.586 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.062 0.938 36 H -0.013 1.013 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.422 8.362 -9.708 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 N -0.185 5.185 4 N -0.157 5.157 5 C -0.115 4.115 6 C 0.090 3.910 7 N -0.371 5.371 8 C 0.310 3.690 9 O -0.456 6.456 10 C -0.167 4.167 11 C -0.134 4.134 12 C -0.134 4.134 13 C -0.019 4.019 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.184 1.184 22 N -0.152 5.152 23 C -0.084 4.084 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.250 0.750 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -28.401 9.369 -10.423 31.670 hybrid contribution 0.395 -1.358 0.712 1.584 sum -28.006 8.010 -9.711 30.705 Atomic orbital electron populations 1.20502 0.80159 1.06246 1.05633 1.25742 0.98801 0.82157 1.01384 1.74236 0.96596 1.26088 1.21628 1.74208 1.13304 1.09663 1.18523 1.24552 0.87779 0.92089 1.07108 1.19359 0.88820 0.97696 0.85136 1.45865 1.28087 1.55073 1.08089 1.21124 0.79160 0.76412 0.92343 1.90723 1.54336 1.52671 1.47910 1.21674 0.99421 1.03431 0.92157 1.21254 0.96239 0.99176 0.96757 1.21453 0.97304 0.99463 0.95188 1.19067 0.93427 0.94006 0.95427 1.21756 1.09752 1.32626 0.93757 0.91650 1.26094 0.96699 0.95688 1.02015 1.70132 1.17355 1.36914 1.33339 0.85389 0.77160 0.78997 0.79135 1.19630 1.21021 1.18443 1.46254 1.05384 1.10515 1.53011 1.22611 1.04499 0.75062 1.06211 0.87834 0.87334 0.88394 0.87991 0.89386 0.74979 0.86736 0.85935 0.93303 0.93876 0.92352 0.91915 0.99479 0.99757 0.92880 0.87982 0.85910 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.06 71.24 0.72 0.44 16 2 C 0.19 2.76 8.03 137.98 1.11 3.86 16 3 N -0.34 -8.40 12.21 -50.16 -0.61 -9.02 16 4 N -0.32 -8.26 12.21 -50.15 -0.61 -8.87 16 5 C 0.15 2.86 7.40 137.98 1.02 3.89 16 6 C 0.22 3.83 6.02 85.63 0.52 4.35 16 7 N -0.72 -12.71 5.55 -466.78 -2.59 -15.30 16 8 C 0.52 12.94 7.83 87.66 0.69 13.62 16 9 O -0.58 -19.80 15.98 -3.03 -0.05 -19.85 16 10 C -0.13 -2.94 5.70 29.85 0.17 -2.77 16 11 C -0.10 -3.34 4.50 30.59 0.14 -3.20 16 12 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 13 C 0.02 0.97 4.97 29.85 0.15 1.12 16 14 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 16 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 17 N -0.94 -58.83 13.29 21.45 0.28 -58.54 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 N -0.46 -5.63 3.15 -527.24 -1.66 -7.29 16 23 C 0.06 0.14 10.71 127.77 1.37 1.51 16 24 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.11 -0.18 7.86 -2.39 -0.02 -0.20 16 26 H 0.10 0.44 8.14 -2.38 -0.02 0.43 16 27 H 0.10 1.49 7.22 -2.39 -0.02 1.48 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.41 5.60 8.46 -92.71 -0.78 4.81 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.05 1.82 8.10 -2.38 -0.02 1.81 16 33 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 37 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 38 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 39 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.12 -0.36 7.81 -2.38 -0.02 -0.38 16 41 H 0.10 0.21 7.20 -2.39 -0.02 0.20 16 Total: -1.00 -84.97 350.41 3.75 -81.22 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.24 Total: 2.81 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 6.73 Total: -11.93 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -5.19 Total: -99.03 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -84.97 3.75 -81.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327666466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -84.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds