Wall clock time and date at job start Tue Mar 31 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.35503 * 126.97939 * 59.68666 * 4 2 1 6 6 N 1.30520 * 107.30810 * 179.83481 * 5 4 2 7 7 N 1.28599 * 109.67063 * 0.44170 * 6 5 4 8 8 C 1.30514 * 109.67556 * 359.72084 * 7 6 5 9 9 C 1.50695 * 126.34917 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47390 * 270.04125 * 9 8 7 11 11 C 1.34781 * 120.00449 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00117 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.46781 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46842 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.46743 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00252 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99449 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99638 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00279 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47173 * 89.99956 * 20 18 16 22 22 H 1.48504 * 109.47048 * 210.00102 * 20 18 16 23 23 H 1.48501 * 109.46976 * 329.99991 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.07999 * 126.34304 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.46887 * 30.04018 * 9 8 7 33 33 H 1.09000 * 109.47481 * 150.03770 * 9 8 7 34 34 H 0.97001 * 120.00034 * 359.97438 * 10 9 8 35 35 H 1.09002 * 109.47056 * 300.00057 * 13 11 10 36 36 H 1.08996 * 109.46955 * 60.00024 * 13 11 10 37 37 H 1.09002 * 109.47235 * 299.99780 * 14 13 11 38 38 H 1.08996 * 109.47493 * 60.00186 * 14 13 11 39 39 H 1.08989 * 109.47073 * 300.00189 * 15 14 13 40 40 H 1.09004 * 109.46481 * 60.00334 * 15 14 13 41 41 H 0.96995 * 119.99938 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.7749 -0.3567 -2.4866 6 7 2.3966 -1.2255 -3.2364 7 7 3.0028 -2.0829 -2.4939 8 6 2.8002 -1.7965 -1.2368 9 6 3.3361 -2.5554 -0.0503 10 7 2.3821 -3.5989 0.3334 11 6 2.6525 -4.4088 1.3763 12 8 3.6854 -4.2733 1.9974 13 6 1.6714 -5.4826 1.7706 14 6 2.2154 -6.2529 2.9753 15 6 1.2190 -7.3428 3.3760 16 6 1.7552 -8.1019 4.5622 17 1 2.7108 -7.8337 4.9880 18 6 1.0257 -9.1390 5.1039 19 7 1.4934 -9.8013 6.1395 20 14 -0.6268 -9.6034 4.3671 21 1 -0.4271 -10.6257 3.3087 22 1 -1.5049 -10.1558 5.4296 23 1 -1.2620 -8.3977 3.7771 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.1790 0.4756 -2.8309 32 1 4.2897 -3.0136 -0.3126 33 1 3.4800 -1.8698 0.7848 34 1 1.5559 -3.7070 -0.1631 35 1 0.7177 -5.0247 2.0331 36 1 1.5277 -6.1679 0.9353 37 1 3.1693 -6.7108 2.7132 38 1 2.3588 -5.5674 3.8105 39 1 0.2655 -6.8846 3.6382 40 1 1.0754 -8.0284 2.5410 41 1 0.9804 -10.5311 6.5204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329897760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:42 Heat of formation + Delta-G solvation = 23.559988 kcal Electronic energy + Delta-G solvation = -21285.811200 eV Core-core repulsion = 18008.769858 eV Total energy + Delta-G solvation = -3277.041342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.59653 -39.62248 -37.22963 -35.29881 -34.29575 -32.22455 -32.01134 -31.30091 -28.76407 -28.05135 -26.80194 -24.26396 -23.57494 -22.02581 -20.83188 -20.65938 -19.88193 -17.83298 -16.92596 -16.79181 -16.44576 -16.07592 -15.68784 -15.48134 -15.07310 -14.29641 -14.14599 -13.99711 -13.78721 -13.44256 -13.29949 -13.03951 -12.85208 -12.64498 -12.24248 -12.02176 -11.91421 -11.68346 -11.62574 -11.00632 -10.79749 -10.75720 -10.64461 -10.12125 -9.93233 -9.78889 -9.70914 -9.40055 -9.28846 -9.14099 -8.51502 -6.01250 -3.99103 1.27107 1.93647 2.43486 2.73877 3.22532 3.31374 3.38408 3.40736 3.73365 3.81947 4.09584 4.12644 4.28597 4.46573 4.56949 4.78591 4.81003 4.86663 4.96940 5.03968 5.17231 5.26578 5.32026 5.36294 5.40764 5.51945 5.54411 5.57757 5.70378 6.04691 6.15768 6.39393 6.53918 6.66565 6.90615 7.33313 7.38324 7.44361 7.81965 8.24075 8.33886 8.58521 9.05527 9.60768 11.12470 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.002879 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.978487 B = 9721.846633 C = 9848.771480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 C -0.164 4.164 4 N -0.461 5.461 5 C 0.157 3.843 6 N -0.296 5.296 7 N -0.274 5.274 8 C 0.158 3.842 9 C 0.209 3.791 10 N -0.737 5.737 11 C 0.517 3.483 12 O -0.530 6.530 13 C -0.140 4.140 14 C -0.088 4.088 15 C -0.015 4.015 16 C -0.519 4.519 17 H 0.073 0.927 18 C 0.064 3.936 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.216 0.784 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 25.252 -15.171 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.221 4.221 4 N -0.152 5.152 5 C -0.131 4.131 6 N -0.136 5.136 7 N -0.115 5.115 8 C -0.109 4.109 9 C 0.083 3.917 10 N -0.393 5.393 11 C 0.305 3.695 12 O -0.405 6.405 13 C -0.180 4.180 14 C -0.126 4.126 15 C -0.052 4.052 16 C -0.557 4.557 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.233 0.767 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.236 0.764 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.896 24.515 -15.793 29.305 hybrid contribution -1.846 0.442 0.472 1.956 sum -4.742 24.957 -15.320 29.666 Atomic orbital electron populations 1.22190 0.92270 1.03774 1.03875 1.21682 0.96200 0.94335 0.85849 1.22194 1.02445 0.93622 1.03887 1.46589 1.37603 1.22517 1.08516 1.26353 1.03558 1.03029 0.80111 1.74337 1.10199 1.02598 1.26456 1.74343 1.18699 1.19842 0.98631 1.24799 0.98544 0.90361 0.97228 1.19407 0.93446 0.88982 0.89835 1.46133 1.23588 1.35092 1.34464 1.21222 0.87994 0.81788 0.78461 1.90717 1.26761 1.70458 1.52538 1.21879 0.98037 0.96034 1.02036 1.21280 0.99803 0.97348 0.94127 1.19606 0.94899 0.93908 0.96775 1.21162 1.06766 1.15057 1.12733 0.90908 1.25056 0.97865 0.95981 0.94743 1.69923 1.38706 1.22241 1.23484 0.86761 0.84425 0.78997 0.78950 1.20312 1.21459 1.19088 0.91449 0.89721 0.91338 0.87235 0.91425 0.89746 0.91442 0.76729 0.87873 0.89757 0.76445 0.89340 0.89106 0.91949 0.92042 0.96699 0.97051 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 9.25 37.16 0.34 -0.19 16 2 C 0.12 0.53 3.56 -67.94 -0.24 0.29 16 3 C -0.16 -0.49 9.26 37.15 0.34 -0.14 16 4 N -0.46 -3.30 2.60 -108.22 -0.28 -3.58 16 5 C 0.16 1.21 11.81 -89.94 -1.06 0.15 16 6 N -0.30 -3.56 12.21 29.69 0.36 -3.20 16 7 N -0.27 -3.55 12.21 32.79 0.40 -3.15 16 8 C 0.16 1.57 7.40 -154.99 -1.15 0.43 16 9 C 0.21 2.09 5.87 -5.20 -0.03 2.06 16 10 N -0.74 -7.84 5.55 -61.48 -0.34 -8.18 16 11 C 0.52 7.43 7.83 -10.98 -0.09 7.34 16 12 O -0.53 -9.70 15.98 5.56 0.09 -9.61 16 13 C -0.14 -2.06 5.70 -27.88 -0.16 -2.22 16 14 C -0.09 -1.76 4.44 -26.73 -0.12 -1.88 16 15 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 16 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 20 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 24 H 0.07 0.17 7.97 -51.93 -0.41 -0.24 16 25 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.11 0.51 6.83 -51.93 -0.35 0.16 16 28 H 0.07 0.16 7.98 -51.93 -0.41 -0.26 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.22 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.75 7.21 -51.93 -0.37 0.37 16 34 H 0.40 3.57 8.46 -40.82 -0.35 3.22 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.01 0.34 7.20 -51.94 -0.37 -0.03 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -36.49 345.80 -7.63 -44.13 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.48 Total: -2.90 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.70 Total: -8.20 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.91 Total: -45.60 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.49 -7.63 -44.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329897760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.687 kcal (2) G-P(sol) polarization free energy of solvation -36.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds