Wall clock time and date at job start Tue Mar 31 2020 01:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39752 * 126.08431 * 2 1 4 4 N 1.30853 * 108.32490 * 179.97438 * 3 2 1 5 5 N 1.40062 * 108.37327 * 359.74944 * 4 3 2 6 6 C 1.46504 * 126.04881 * 180.26438 * 5 4 3 7 7 C 1.35262 * 107.90467 * 0.41976 * 5 4 3 8 8 N 1.39475 * 126.21419 * 179.84588 * 7 5 4 9 9 C 1.34772 * 120.00214 * 330.56618 * 8 7 5 10 10 O 1.21292 * 120.00065 * 354.11511 * 9 8 7 11 11 C 1.50700 * 119.99948 * 174.12107 * 9 8 7 12 12 H 1.08997 * 109.47519 * 40.00111 * 11 9 8 13 13 N 1.46904 * 109.47189 * 159.99571 * 11 9 8 14 14 C 1.52992 * 109.47253 * 279.99763 * 11 9 8 15 15 C 1.52997 * 109.47650 * 174.99990 * 14 11 9 16 16 C 1.52992 * 109.47650 * 179.97438 * 15 14 11 17 17 C 1.50706 * 109.47461 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99707 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00278 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99867 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47022 * 119.99478 * 21 19 17 24 24 H 1.48498 * 109.46723 * 239.99405 * 21 19 17 25 25 H 1.09001 * 109.47093 * 270.03636 * 1 2 3 26 26 H 1.09005 * 109.47110 * 30.03926 * 1 2 3 27 27 H 1.08997 * 109.46834 * 150.03776 * 1 2 3 28 28 H 1.08003 * 125.84154 * 359.95265 * 3 2 1 29 29 H 1.09005 * 109.47012 * 272.38313 * 6 5 4 30 30 H 1.08999 * 109.47095 * 32.38637 * 6 5 4 31 31 H 1.08996 * 109.47211 * 152.38587 * 6 5 4 32 32 H 0.96998 * 119.99865 * 150.56293 * 8 7 5 33 33 H 1.00905 * 110.99588 * 60.00243 * 13 11 9 34 34 H 1.00902 * 111.00044 * 183.94953 * 13 11 9 35 35 H 1.09004 * 109.47462 * 295.00225 * 14 11 9 36 36 H 1.09005 * 109.47280 * 54.99866 * 14 11 9 37 37 H 1.09004 * 109.46881 * 300.00591 * 15 14 11 38 38 H 1.09005 * 109.46880 * 59.99631 * 15 14 11 39 39 H 1.09004 * 109.47462 * 300.00236 * 16 15 14 40 40 H 1.09005 * 109.47280 * 59.99876 * 16 15 14 41 41 H 0.97000 * 120.00195 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1294 0.0000 4 7 3.5763 0.7303 0.0006 5 7 3.5913 -0.6702 0.0067 6 6 4.7849 -1.5196 0.0148 7 6 2.3087 -1.0999 0.0005 8 7 1.8848 -2.4287 0.0005 9 6 2.6515 -3.3807 -0.5671 10 8 3.6566 -3.0698 -1.1708 11 6 2.2600 -4.8313 -0.4519 12 1 1.1800 -4.9263 -0.5642 13 7 2.9315 -5.6049 -1.5048 14 6 2.6791 -5.3653 0.9192 15 6 2.1722 -6.7994 1.0848 16 6 2.5919 -7.3336 2.4557 17 6 2.0931 -8.7464 2.6185 18 1 1.5325 -9.2161 1.8238 19 6 2.3516 -9.4389 3.7824 20 7 3.0338 -8.8668 4.7502 21 14 1.7340 -11.1903 3.9839 22 1 0.9995 -11.6001 2.7600 23 1 2.8877 -12.1005 4.1973 24 1 0.8234 -11.2624 5.1547 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3633 -0.8903 -0.5132 28 1 1.9950 2.1562 -0.0007 29 1 5.1095 -1.6999 -1.0101 30 1 5.5821 -1.0208 0.5660 31 1 4.5513 -2.4701 0.4944 32 1 1.0382 -2.6676 0.4092 33 1 3.9346 -5.5330 -1.4224 34 1 2.6358 -6.5695 -1.4893 35 1 3.7663 -5.3530 0.9972 36 1 2.2517 -4.7364 1.7002 37 1 1.0851 -6.8117 1.0068 38 1 2.5997 -7.4283 0.3038 39 1 3.6791 -7.3213 2.5332 40 1 2.1648 -6.7048 3.2370 41 1 3.2160 -9.3541 5.5689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333525272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:28 Heat of formation + Delta-G solvation = 12.210092 kcal Electronic energy + Delta-G solvation = -21823.774300 eV Core-core repulsion = 18546.240790 eV Total energy + Delta-G solvation = -3277.533511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.75027 -40.86385 -37.56038 -36.16935 -35.33098 -34.53244 -33.02432 -31.85477 -29.61611 -28.71254 -27.14758 -26.12427 -24.59987 -22.75510 -21.88093 -21.30711 -20.83002 -18.92613 -18.53391 -18.47373 -16.91208 -16.61045 -16.51628 -16.31229 -16.01567 -15.76837 -15.31640 -14.86326 -14.52716 -14.30800 -14.21028 -14.00624 -13.78764 -13.67108 -13.33679 -13.10681 -12.92557 -12.89309 -12.59509 -12.40008 -12.37865 -11.94988 -11.54797 -11.50306 -11.43987 -11.24683 -10.83970 -10.57273 -10.01602 -9.72239 -9.02140 -8.21319 -6.32198 0.58734 1.27185 1.39674 1.40837 1.42561 1.53209 1.80596 1.95689 2.40207 3.12821 3.43826 3.59459 3.62859 3.91333 4.02557 4.12587 4.30877 4.32139 4.36317 4.45698 4.51750 4.64735 4.73772 4.74560 4.81790 4.99015 5.02010 5.16225 5.20354 5.23064 5.30017 5.52152 5.72605 5.74551 5.84878 5.87985 6.03584 6.17727 6.23090 6.45238 6.72353 6.86578 6.88925 7.38000 8.90401 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.003162 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.336160 B = 8851.964609 C = 9009.520005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.268 4.268 3 C 0.062 3.938 4 N -0.327 5.327 5 N -0.381 5.381 6 C 0.125 3.875 7 C 0.296 3.704 8 N -0.636 5.636 9 C 0.516 3.484 10 O -0.534 6.534 11 C 0.093 3.907 12 H 0.131 0.869 13 N -0.831 5.831 14 C -0.136 4.136 15 C -0.094 4.094 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.064 0.936 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.259 1.259 23 H -0.282 1.282 24 H -0.280 1.280 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.219 0.781 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.439 0.561 33 H 0.347 0.653 34 H 0.360 0.640 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.058 0.942 39 H -0.015 1.015 40 H -0.009 1.009 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 15.858 -10.332 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.282 4.282 3 C -0.122 4.122 4 N -0.150 5.150 5 N -0.167 5.167 6 C -0.016 4.016 7 C 0.074 3.926 8 N -0.288 5.288 9 C 0.305 3.695 10 O -0.409 6.409 11 C -0.022 4.022 12 H 0.149 0.851 13 N -0.364 5.364 14 C -0.176 4.176 15 C -0.132 4.132 16 C -0.015 4.015 17 C -0.578 4.578 18 H 0.082 0.918 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.182 1.182 23 H -0.208 1.208 24 H -0.206 1.206 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.235 0.765 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.280 0.720 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.003 0.997 40 H 0.010 0.990 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.066 16.705 -11.126 20.479 hybrid contribution -0.443 -1.919 1.611 2.544 sum -4.509 14.787 -9.516 18.153 Atomic orbital electron populations 1.20096 0.86474 1.03325 1.02532 1.20006 0.98410 0.89592 1.20227 1.24184 0.88920 1.01124 0.97994 1.77394 1.22634 0.87317 1.27661 1.48648 1.04907 1.05058 1.58043 1.21970 0.84313 0.91752 1.03519 1.18076 0.85879 0.86065 1.02540 1.42898 1.25235 1.02662 1.58053 1.21267 0.82499 0.88451 0.77314 1.90767 1.26599 1.82953 1.40551 1.21318 1.02246 0.87767 0.90892 0.85139 1.58707 1.12547 1.17304 1.47837 1.22264 1.00978 0.97937 0.96455 1.21427 1.00647 0.93597 0.97522 1.19016 0.94517 0.94756 0.93198 1.21771 1.34518 1.00081 1.01404 0.91754 1.25979 0.95402 1.02803 0.95813 1.70101 1.41397 1.39162 1.06908 0.85439 0.78091 0.79271 0.78508 1.18231 1.20792 1.20565 0.90988 0.89990 0.91896 0.76493 0.90197 0.90060 0.90663 0.71968 0.83944 0.82317 0.92952 0.91048 0.91510 0.92384 0.99679 0.99027 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.30 71.24 0.73 -0.11 16 2 C -0.27 -5.47 6.12 -19.99 -0.12 -5.60 16 3 C 0.06 1.31 11.95 85.20 1.02 2.33 16 4 N -0.33 -9.02 12.56 -57.09 -0.72 -9.74 16 5 N -0.38 -10.69 3.97 -366.44 -1.45 -12.14 16 6 C 0.13 3.31 9.23 127.77 1.18 4.49 16 7 C 0.30 7.26 7.28 131.32 0.96 8.22 16 8 N -0.64 -13.01 5.35 -308.56 -1.65 -14.66 16 9 C 0.52 12.43 6.06 87.66 0.53 12.96 16 10 O -0.53 -15.76 11.26 -3.07 -0.03 -15.79 16 11 C 0.09 2.03 3.21 44.17 0.14 2.17 16 12 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 13 N -0.83 -19.01 8.94 -171.81 -1.54 -20.54 16 14 C -0.14 -3.71 4.84 30.59 0.15 -3.56 16 15 C -0.09 -3.21 4.92 30.59 0.15 -3.06 16 16 C 0.02 1.09 4.97 29.85 0.15 1.23 16 17 C -0.54 -29.06 9.11 25.60 0.23 -28.83 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 20 N -0.94 -55.69 13.29 21.45 0.28 -55.41 16 21 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.22 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.08 2.25 6.88 -2.38 -0.02 2.24 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.02 6.15 -2.39 -0.01 2.01 16 32 H 0.44 6.18 8.80 -92.71 -0.82 5.36 16 33 H 0.35 8.41 8.58 -89.69 -0.77 7.64 16 34 H 0.36 7.61 7.55 -89.69 -0.68 6.93 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 1.88 6.87 -2.38 -0.02 1.87 16 39 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -70.99 340.04 1.30 -69.70 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -1.20 Total: 23.18 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.58 Total: -9.43 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.07 Total: -112.48 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.03 Total: -15.79 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.99 1.30 -69.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333525272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.906 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds