Wall clock time and date at job start Tue Mar 31 2020 01:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39760 * 126.08662 * 2 1 4 4 N 1.30843 * 108.32584 * 179.81592 * 3 2 1 5 5 N 1.40068 * 108.37296 * 0.44187 * 4 3 2 6 6 C 1.46507 * 126.04709 * 179.75126 * 5 4 3 7 7 C 1.35258 * 107.90816 * 359.71751 * 5 4 3 8 8 N 1.39475 * 126.21589 * 180.02562 * 7 5 4 9 9 C 1.34770 * 119.99930 * 308.07498 * 8 7 5 10 10 O 1.21292 * 120.00040 * 5.91347 * 9 8 7 11 11 C 1.50701 * 119.99734 * 185.90907 * 9 8 7 12 12 H 1.08992 * 109.47297 * 320.00171 * 11 9 8 13 13 N 1.46908 * 109.46942 * 200.00120 * 11 9 8 14 14 C 1.53002 * 109.46941 * 80.00471 * 11 9 8 15 15 C 1.53005 * 109.47033 * 184.99853 * 14 11 9 16 16 C 1.52995 * 109.47166 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47352 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99778 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00275 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47096 * 60.00409 * 21 19 17 23 23 H 1.48502 * 109.47109 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47247 * 300.00269 * 21 19 17 25 25 H 1.08997 * 109.47218 * 269.69157 * 1 2 3 26 26 H 1.09006 * 109.46996 * 149.68845 * 1 2 3 27 27 H 1.09000 * 109.47025 * 29.69256 * 1 2 3 28 28 H 1.08006 * 125.83493 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47368 * 275.89780 * 6 5 4 30 30 H 1.09001 * 109.46999 * 35.89424 * 6 5 4 31 31 H 1.08996 * 109.47201 * 155.89055 * 6 5 4 32 32 H 0.96998 * 119.99460 * 128.08485 * 8 7 5 33 33 H 1.00897 * 110.99835 * 299.99733 * 13 11 9 34 34 H 1.00901 * 110.99699 * 63.95693 * 13 11 9 35 35 H 1.08997 * 109.47105 * 304.99955 * 14 11 9 36 36 H 1.08998 * 109.47060 * 65.00124 * 14 11 9 37 37 H 1.09007 * 109.47131 * 299.99994 * 15 14 11 38 38 H 1.08994 * 109.47116 * 59.99746 * 15 14 11 39 39 H 1.08997 * 109.47196 * 300.00238 * 16 15 14 40 40 H 1.09007 * 109.47130 * 60.00289 * 16 15 14 41 41 H 0.97000 * 120.00164 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3301 1.1294 0.0000 4 7 3.5762 0.7303 0.0040 5 7 3.5912 -0.6703 -0.0036 6 6 4.7849 -1.5196 -0.0074 7 6 2.3087 -1.0999 -0.0059 8 7 1.8848 -2.4287 -0.0126 9 6 2.3658 -3.2848 -0.9356 10 8 3.2455 -2.9301 -1.6916 11 6 1.8109 -4.6829 -1.0282 12 1 1.6400 -5.0732 -0.0250 13 7 2.7699 -5.5447 -1.7322 14 6 0.4885 -4.6567 -1.7973 15 6 -0.1368 -6.0531 -1.7842 16 6 -1.4594 -6.0268 -2.5528 17 6 -2.0750 -7.4023 -2.5405 18 1 -1.5733 -8.2140 -2.0346 19 6 -3.2793 -7.6243 -3.1741 20 7 -3.8906 -6.6359 -3.7896 21 14 -4.0427 -9.3291 -3.1581 22 1 -4.2933 -9.7462 -1.7551 23 1 -5.3264 -9.3037 -3.9042 24 1 -3.1150 -10.2930 -3.8029 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8927 -0.5091 28 1 1.9950 2.1562 0.0004 29 1 5.1428 -1.6387 -1.0301 30 1 5.5632 -1.0552 0.5981 31 1 4.5369 -2.4968 0.4069 32 1 1.2436 -2.7364 0.6470 33 1 2.9450 -5.2037 -2.6655 34 1 3.6296 -5.6301 -1.2110 35 1 -0.1927 -3.9491 -1.3248 36 1 0.6732 -4.3510 -2.8271 37 1 0.5445 -6.7607 -2.2568 38 1 -0.3214 -6.3589 -0.7545 39 1 -2.1405 -5.3193 -2.0799 40 1 -1.2752 -5.7209 -3.5827 41 1 -4.7380 -6.7920 -4.2350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333525273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:35 Heat of formation + Delta-G solvation = 24.195377 kcal Electronic energy + Delta-G solvation = -21762.384969 eV Core-core repulsion = 18485.371180 eV Total energy + Delta-G solvation = -3277.013790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79404 -39.93066 -35.96237 -35.18872 -33.82800 -33.40317 -31.43358 -31.00402 -28.42073 -27.67058 -25.65814 -25.07444 -22.97842 -21.43676 -20.50421 -20.17395 -20.08069 -17.75949 -17.56256 -16.42825 -15.97215 -15.89096 -15.28929 -14.97729 -14.65438 -14.46848 -14.14096 -13.88212 -13.49717 -13.39438 -13.12752 -12.68880 -12.46275 -12.37001 -12.21280 -11.86325 -11.60969 -11.22747 -11.02291 -10.80290 -10.74375 -10.48600 -10.47239 -10.36423 -9.67193 -9.29130 -9.25298 -9.09856 -8.78543 -8.31967 -8.30742 -5.97404 -3.99425 1.51099 2.08426 2.21985 2.55571 2.94100 3.34870 3.39280 3.41825 4.27992 4.36429 4.48229 4.60795 4.88971 4.97684 5.02348 5.04947 5.21083 5.25503 5.35133 5.38395 5.52238 5.61928 5.67665 5.82230 5.94686 5.97900 6.01418 6.34662 6.47669 6.71483 6.74097 6.91690 6.94356 7.03798 7.18054 7.34400 7.51767 7.71169 7.76125 7.86176 8.03447 8.46333 9.07929 9.64506 11.13943 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.003272 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.191190 B = 8555.491842 C = 9351.895972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.247 4.247 3 C 0.058 3.942 4 N -0.289 5.289 5 N -0.363 5.363 6 C 0.113 3.887 7 C 0.305 3.695 8 N -0.654 5.654 9 C 0.484 3.516 10 O -0.529 6.529 11 C 0.084 3.916 12 H 0.105 0.895 13 N -0.808 5.808 14 C -0.104 4.104 15 C -0.099 4.099 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.186 0.814 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.423 0.577 33 H 0.352 0.648 34 H 0.339 0.661 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.013 0.987 40 H 0.014 0.986 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.535 11.937 10.812 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.261 4.261 3 C -0.127 4.127 4 N -0.112 5.112 5 N -0.148 5.148 6 C -0.028 4.028 7 C 0.085 3.915 8 N -0.307 5.307 9 C 0.270 3.730 10 O -0.403 6.403 11 C -0.033 4.033 12 H 0.123 0.877 13 N -0.337 5.337 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.017 4.017 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.203 0.797 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.818 11.837 10.205 21.537 hybrid contribution -0.949 -0.395 0.229 1.053 sum 13.869 11.442 10.433 20.788 Atomic orbital electron populations 1.20057 0.88598 1.02792 1.01592 1.19767 0.97093 0.90596 1.18646 1.23581 0.89665 0.99621 0.99811 1.77414 1.21033 0.87148 1.25610 1.48571 1.04638 1.04920 1.56635 1.21789 0.84762 0.92330 1.03940 1.17655 0.85184 0.85546 1.03126 1.43195 1.46693 1.06368 1.34491 1.23130 0.81787 0.89404 0.78678 1.90715 1.30114 1.78082 1.41393 1.21818 0.95593 0.84672 1.01180 0.87695 1.59029 1.16224 1.51183 1.07234 1.21691 0.91623 1.01384 0.99555 1.21545 0.98795 0.92804 1.00570 1.19112 0.90597 0.96882 0.95143 1.21231 1.05178 0.95590 1.33713 0.92711 1.25025 0.97227 0.96767 0.95485 1.69952 1.16841 1.31274 1.35570 0.86676 0.78469 0.84861 0.78093 1.20275 1.21365 1.20250 0.92021 0.91899 0.91453 0.79703 0.89898 0.89969 0.90579 0.73794 0.83312 0.84923 0.91610 0.91760 0.91788 0.93563 0.96888 0.96779 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.32 36.00 0.37 -0.30 16 2 C -0.25 -2.84 6.12 -104.82 -0.64 -3.48 16 3 C 0.06 0.66 11.95 -17.40 -0.21 0.45 16 4 N -0.29 -3.85 12.56 30.60 0.38 -3.46 16 5 N -0.36 -4.66 3.94 -67.17 -0.26 -4.92 16 6 C 0.11 1.18 9.61 59.85 0.58 1.75 16 7 C 0.30 3.75 6.84 -153.16 -1.05 2.71 16 8 N -0.65 -6.81 5.23 -11.46 -0.06 -6.87 16 9 C 0.48 5.81 6.27 -10.99 -0.07 5.74 16 10 O -0.53 -7.75 13.56 5.55 0.08 -7.67 16 11 C 0.08 0.99 3.15 -68.86 -0.22 0.77 16 12 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 13 N -0.81 -9.66 8.44 -5.65 -0.05 -9.71 16 14 C -0.10 -1.58 4.84 -26.73 -0.13 -1.71 16 15 C -0.10 -1.91 5.04 -26.73 -0.13 -2.05 16 16 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 17 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 18 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.19 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.08 0.94 7.51 -51.93 -0.39 0.55 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.71 7.25 -51.93 -0.38 0.34 16 32 H 0.42 3.26 8.83 -40.82 -0.36 2.90 16 33 H 0.35 4.48 8.58 -39.29 -0.34 4.14 16 34 H 0.34 3.34 9.06 -39.29 -0.36 2.98 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.28 7.75 -51.92 -0.40 0.88 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -33.90 346.07 -7.45 -41.34 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.41 Total: 4.82 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.05 Total: -9.14 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.75 Total: -51.12 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.08 Total: -7.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.90 -7.45 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333525273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.538 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds