Wall clock time and date at job start Tue Mar 31 2020 01:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39760 * 126.08662 * 2 1 4 4 N 1.30843 * 108.32584 * 179.81592 * 3 2 1 5 5 N 1.40068 * 108.37296 * 0.44187 * 4 3 2 6 6 C 1.46507 * 126.04709 * 179.75126 * 5 4 3 7 7 C 1.35258 * 107.90816 * 359.71751 * 5 4 3 8 8 N 1.39475 * 126.21589 * 180.02562 * 7 5 4 9 9 C 1.34770 * 119.99930 * 308.07498 * 8 7 5 10 10 O 1.21292 * 120.00040 * 5.91347 * 9 8 7 11 11 C 1.50701 * 119.99734 * 185.90907 * 9 8 7 12 12 H 1.08992 * 109.47297 * 320.00171 * 11 9 8 13 13 N 1.46908 * 109.46942 * 200.00120 * 11 9 8 14 14 C 1.53002 * 109.46941 * 80.00471 * 11 9 8 15 15 C 1.53005 * 109.47033 * 184.99853 * 14 11 9 16 16 C 1.52995 * 109.47166 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47352 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99778 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00275 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47096 * 60.00409 * 21 19 17 23 23 H 1.48502 * 109.47109 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47247 * 300.00269 * 21 19 17 25 25 H 1.08997 * 109.47218 * 269.69157 * 1 2 3 26 26 H 1.09006 * 109.46996 * 149.68845 * 1 2 3 27 27 H 1.09000 * 109.47025 * 29.69256 * 1 2 3 28 28 H 1.08006 * 125.83493 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47368 * 275.89780 * 6 5 4 30 30 H 1.09001 * 109.46999 * 35.89424 * 6 5 4 31 31 H 1.08996 * 109.47201 * 155.89055 * 6 5 4 32 32 H 0.96998 * 119.99460 * 128.08485 * 8 7 5 33 33 H 1.00897 * 110.99835 * 299.99733 * 13 11 9 34 34 H 1.00901 * 110.99699 * 63.95693 * 13 11 9 35 35 H 1.08997 * 109.47105 * 304.99955 * 14 11 9 36 36 H 1.08998 * 109.47060 * 65.00124 * 14 11 9 37 37 H 1.09007 * 109.47131 * 299.99994 * 15 14 11 38 38 H 1.08994 * 109.47116 * 59.99746 * 15 14 11 39 39 H 1.08997 * 109.47196 * 300.00238 * 16 15 14 40 40 H 1.09007 * 109.47130 * 60.00289 * 16 15 14 41 41 H 0.97000 * 120.00164 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3301 1.1294 0.0000 4 7 3.5762 0.7303 0.0040 5 7 3.5912 -0.6703 -0.0036 6 6 4.7849 -1.5196 -0.0074 7 6 2.3087 -1.0999 -0.0059 8 7 1.8848 -2.4287 -0.0126 9 6 2.3658 -3.2848 -0.9356 10 8 3.2455 -2.9301 -1.6916 11 6 1.8109 -4.6829 -1.0282 12 1 1.6400 -5.0732 -0.0250 13 7 2.7699 -5.5447 -1.7322 14 6 0.4885 -4.6567 -1.7973 15 6 -0.1368 -6.0531 -1.7842 16 6 -1.4594 -6.0268 -2.5528 17 6 -2.0750 -7.4023 -2.5405 18 1 -1.5733 -8.2140 -2.0346 19 6 -3.2793 -7.6243 -3.1741 20 7 -3.8906 -6.6359 -3.7896 21 14 -4.0427 -9.3291 -3.1581 22 1 -4.2933 -9.7462 -1.7551 23 1 -5.3264 -9.3037 -3.9042 24 1 -3.1150 -10.2930 -3.8029 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8927 -0.5091 28 1 1.9950 2.1562 0.0004 29 1 5.1428 -1.6387 -1.0301 30 1 5.5632 -1.0552 0.5981 31 1 4.5369 -2.4968 0.4069 32 1 1.2436 -2.7364 0.6470 33 1 2.9450 -5.2037 -2.6655 34 1 3.6296 -5.6301 -1.2110 35 1 -0.1927 -3.9491 -1.3248 36 1 0.6732 -4.3510 -2.8271 37 1 0.5445 -6.7607 -2.2568 38 1 -0.3214 -6.3589 -0.7545 39 1 -2.1405 -5.3193 -2.0799 40 1 -1.2752 -5.7209 -3.5827 41 1 -4.7380 -6.7920 -4.2350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333525273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:34 Heat of formation + Delta-G solvation = -0.011641 kcal Electronic energy + Delta-G solvation = -21763.434664 eV Core-core repulsion = 18485.371180 eV Total energy + Delta-G solvation = -3278.063485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68174 -40.90521 -37.23837 -36.13054 -35.26358 -34.64382 -33.13447 -31.85015 -29.69661 -28.79649 -26.90747 -26.13112 -24.51035 -22.51384 -21.71314 -21.38148 -21.08201 -18.66289 -18.56036 -18.38091 -17.15690 -16.84953 -16.47528 -16.19567 -15.95679 -15.59986 -15.44482 -14.70227 -14.58259 -14.28328 -14.25637 -14.19768 -13.68089 -13.43593 -13.17091 -13.09888 -12.98004 -12.83173 -12.48232 -12.40448 -12.20292 -11.91388 -11.66895 -11.37283 -11.30126 -11.22621 -10.98519 -10.49510 -10.16441 -9.80132 -9.18063 -8.15194 -6.25494 0.59490 1.21775 1.29345 1.43045 1.45835 1.53541 1.69757 2.08257 2.44947 3.18100 3.38474 3.51417 3.67632 3.93499 4.10661 4.13192 4.25956 4.26452 4.45027 4.50345 4.54466 4.65748 4.73347 4.81131 4.92716 4.96537 5.14942 5.17781 5.24995 5.29156 5.37009 5.62840 5.67777 5.85615 5.87013 5.96508 6.02043 6.16512 6.32263 6.44431 6.63406 6.86783 6.92727 7.43650 8.96305 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.003272 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.191190 B = 8555.491842 C = 9351.895972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.254 4.254 3 C 0.057 3.943 4 N -0.318 5.318 5 N -0.375 5.375 6 C 0.113 3.887 7 C 0.286 3.714 8 N -0.640 5.640 9 C 0.490 3.510 10 O -0.556 6.556 11 C 0.096 3.904 12 H 0.134 0.866 13 N -0.815 5.815 14 C -0.096 4.096 15 C -0.083 4.083 16 C 0.021 3.979 17 C -0.540 4.540 18 H 0.061 0.939 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.269 1.269 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.216 0.784 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.436 0.564 33 H 0.347 0.653 34 H 0.352 0.648 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.059 0.941 39 H -0.006 1.006 40 H -0.018 1.018 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.560 11.407 12.341 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.268 4.268 3 C -0.127 4.127 4 N -0.142 5.142 5 N -0.160 5.160 6 C -0.028 4.028 7 C 0.066 3.934 8 N -0.294 5.294 9 C 0.276 3.724 10 O -0.432 6.432 11 C -0.020 4.020 12 H 0.151 0.849 13 N -0.344 5.344 14 C -0.134 4.134 15 C -0.121 4.121 16 C -0.016 4.016 17 C -0.578 4.578 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.786 3.214 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.233 0.767 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.278 0.722 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.012 0.988 40 H 0.001 0.999 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.849 11.300 11.773 22.063 hybrid contribution -0.969 -0.175 -0.261 1.018 sum 13.881 11.124 11.512 21.189 Atomic orbital electron populations 1.20096 0.87147 1.02841 1.02672 1.20143 0.98171 0.90453 1.18006 1.24154 0.89018 1.01055 0.98499 1.77364 1.22313 0.87690 1.26791 1.48777 1.05283 1.05010 1.56961 1.21852 0.84764 0.92762 1.03426 1.17966 0.85438 0.86285 1.03691 1.43052 1.46381 1.05632 1.34320 1.23049 0.81433 0.89396 0.78486 1.90717 1.31466 1.78443 1.42537 1.21649 0.93682 0.84835 1.01802 0.84871 1.59036 1.17123 1.51006 1.07261 1.21485 0.93620 0.98964 0.99334 1.21277 0.95598 0.95189 1.00014 1.19054 0.93269 0.95241 0.94042 1.21725 1.05607 0.96901 1.33590 0.92101 1.25969 0.97905 1.01047 0.95031 1.70091 1.17321 1.33659 1.36501 0.85554 0.77462 0.79655 0.78702 1.18898 1.21111 1.19424 0.90356 0.92845 0.90408 0.76734 0.91345 0.88385 0.89681 0.72195 0.83927 0.83397 0.90559 0.93672 0.92478 0.92219 0.98806 0.99923 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.32 71.23 0.73 -0.42 16 2 C -0.25 -5.45 6.12 -19.99 -0.12 -5.58 16 3 C 0.06 1.21 11.95 85.21 1.02 2.22 16 4 N -0.32 -8.22 12.56 -57.09 -0.72 -8.94 16 5 N -0.37 -9.35 3.94 -366.44 -1.45 -10.80 16 6 C 0.11 2.28 9.61 127.77 1.23 3.51 16 7 C 0.29 6.71 6.84 131.32 0.90 7.60 16 8 N -0.64 -12.26 5.23 -308.57 -1.61 -13.88 16 9 C 0.49 11.09 6.27 87.66 0.55 11.64 16 10 O -0.56 -15.92 13.56 -3.07 -0.04 -15.97 16 11 C 0.10 2.09 3.15 44.17 0.14 2.23 16 12 H 0.13 2.19 8.14 -2.39 -0.02 2.18 16 13 N -0.82 -18.31 8.44 -171.79 -1.45 -19.76 16 14 C -0.10 -2.82 4.84 30.60 0.15 -2.68 16 15 C -0.08 -3.14 5.04 30.59 0.15 -2.99 16 16 C 0.02 1.08 4.97 29.85 0.15 1.23 16 17 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 20 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 21 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.22 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.07 1.57 7.51 -2.39 -0.02 1.55 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.51 7.25 -2.39 -0.02 1.49 16 32 H 0.44 5.75 8.83 -92.71 -0.82 4.93 16 33 H 0.35 8.61 8.58 -89.70 -0.77 7.84 16 34 H 0.35 6.30 9.06 -89.69 -0.81 5.48 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.24 7.75 -2.38 -0.02 2.22 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 41 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.46 346.07 1.29 -72.17 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -1.34 Total: 20.82 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.59 Total: -13.04 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -4.94 Total: -109.97 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.04 Total: -15.97 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.46 1.29 -72.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333525273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.156 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds