Wall clock time and date at job start Tue Mar 31 2020 01:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40069 * 126.04770 * 2 1 4 4 C 1.30845 * 108.37444 * 180.26809 * 3 2 1 5 5 C 1.50702 * 125.83850 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47268 * 255.04332 * 5 4 3 7 7 C 1.52993 * 109.47092 * 15.04447 * 5 4 3 8 8 C 1.52998 * 109.46860 * 135.04466 * 5 4 3 9 9 C 1.39764 * 108.32059 * 0.02562 * 4 3 2 10 10 C 1.35255 * 126.04592 * 180.32200 * 2 1 3 11 11 N 1.39502 * 126.21065 * 359.70325 * 10 2 1 12 12 C 1.34774 * 120.00050 * 180.02562 * 11 10 2 13 13 O 1.21598 * 119.99710 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00315 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00199 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47233 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99654 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47156 * 60.00455 * 20 18 16 22 22 H 1.48508 * 109.46992 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47109 * 300.00015 * 20 18 16 24 24 H 1.09007 * 109.46759 * 269.68391 * 1 2 3 25 25 H 1.09000 * 109.47123 * 29.68251 * 1 2 3 26 26 H 1.08997 * 109.47183 * 149.68609 * 1 2 3 27 27 H 1.09000 * 109.47066 * 60.00229 * 6 5 4 28 28 H 1.09000 * 109.47646 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.47314 * 300.00294 * 6 5 4 30 30 H 1.09003 * 109.47266 * 59.99980 * 7 5 4 31 31 H 1.09000 * 109.47212 * 179.97438 * 7 5 4 32 32 H 1.09000 * 109.47258 * 299.99781 * 7 5 4 33 33 H 1.09005 * 109.47439 * 59.99816 * 8 5 4 34 34 H 1.09000 * 109.47378 * 179.97438 * 8 5 4 35 35 H 1.09001 * 109.47562 * 300.00126 * 8 5 4 36 36 H 1.07998 * 126.08797 * 180.02562 * 9 4 3 37 37 H 0.97001 * 120.00094 * 0.02562 * 11 10 2 38 38 H 0.97001 * 119.99828 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47325 * 300.00117 * 15 14 12 40 40 H 1.09000 * 109.46874 * 59.99539 * 15 14 12 41 41 H 0.97006 * 120.00092 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1325 0.0000 4 6 3.5359 0.7353 -0.0058 5 6 4.7475 1.6314 -0.0085 6 6 5.3735 1.6387 -1.4045 7 6 4.3306 3.0538 0.3709 8 6 5.7685 1.1116 1.0055 9 6 3.5517 -0.6623 -0.0103 10 6 2.2609 -1.0936 -0.0061 11 7 1.8357 -2.4222 -0.0078 12 6 2.7420 -3.4198 -0.0136 13 8 3.9303 -3.1615 -0.0179 14 7 2.3314 -4.7034 -0.0157 15 6 3.3165 -5.7877 -0.0226 16 6 2.6028 -7.1149 -0.0231 17 1 1.5233 -7.1476 -0.0190 18 6 3.3278 -8.2876 -0.0297 19 7 4.6424 -8.2479 -0.0351 20 14 2.4431 -9.9328 -0.0309 21 1 1.5872 -10.0336 -1.2401 22 1 3.4418 -11.0319 -0.0378 23 1 1.5972 -10.0409 1.1848 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3633 -0.8871 -0.5187 27 1 4.6461 2.0090 -2.1269 28 1 6.2501 2.2865 -1.4064 29 1 5.6705 0.6253 -1.6748 30 1 3.8847 3.0486 1.3655 31 1 5.2070 3.7019 0.3694 32 1 3.6033 3.4241 -0.3515 33 1 6.0655 0.0982 0.7353 34 1 6.6451 1.7595 1.0034 35 1 5.3226 1.1064 2.0002 36 1 4.4316 -1.2885 -0.0151 37 1 0.8878 -2.6282 -0.0047 38 1 1.3835 -4.9094 -0.0127 39 1 3.9377 -5.7085 -0.9148 40 1 3.9446 -5.7135 0.8651 41 1 5.1526 -9.0729 -0.0393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343959795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:12 Heat of formation + Delta-G solvation = 16.544250 kcal Electronic energy + Delta-G solvation = -21829.412489 eV Core-core repulsion = 18552.066922 eV Total energy + Delta-G solvation = -3277.345567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63065 -40.87976 -37.94394 -36.35178 -35.73309 -34.36378 -33.47590 -30.48313 -29.00317 -28.09553 -27.93818 -27.35069 -25.02311 -23.37252 -22.51956 -21.36211 -20.42642 -19.32193 -18.32969 -17.86876 -17.06919 -16.93697 -16.41933 -16.15750 -15.79212 -15.36375 -15.03546 -15.00165 -14.90284 -14.22422 -14.20334 -14.04741 -13.60604 -13.39536 -13.01442 -12.94262 -12.91311 -12.68666 -12.52548 -12.24231 -12.14182 -12.13187 -11.94263 -11.70047 -11.54198 -11.48672 -11.04985 -10.80124 -10.02288 -9.74188 -9.03893 -8.27887 -6.44331 0.77361 0.96176 1.45498 1.48813 1.57045 1.73732 1.94794 2.22571 2.39448 3.07632 3.22573 3.42721 3.81842 4.06147 4.12164 4.34816 4.38447 4.49409 4.59454 4.62443 4.81896 4.82450 4.89481 4.93345 4.99826 5.03917 5.06724 5.07649 5.21605 5.26038 5.30249 5.43001 5.45416 5.48909 5.61313 5.81047 5.82374 5.94782 6.15786 6.65239 6.74299 7.07657 7.25036 7.49684 8.83934 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027547 B = 0.003436 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.196260 B = 8145.959392 C = 8960.497367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.391 5.391 3 N -0.304 5.304 4 C 0.096 3.904 5 C 0.009 3.991 6 C -0.132 4.132 7 C -0.125 4.125 8 C -0.135 4.135 9 C -0.307 4.307 10 C 0.324 3.676 11 N -0.645 5.645 12 C 0.700 3.300 13 O -0.607 6.607 14 N -0.708 5.708 15 C 0.285 3.715 16 C -0.556 4.556 17 H 0.086 0.914 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.145 0.855 37 H 0.424 0.576 38 H 0.409 0.591 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.540 18.715 -0.049 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.179 5.179 3 N -0.127 5.127 4 C -0.070 4.070 5 C 0.007 3.993 6 C -0.190 4.190 7 C -0.183 4.183 8 C -0.192 4.192 9 C -0.339 4.339 10 C 0.102 3.898 11 N -0.298 5.298 12 C 0.399 3.601 13 O -0.485 6.485 14 N -0.362 5.362 15 C 0.163 3.837 16 C -0.594 4.594 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.187 1.187 24 H 0.107 0.893 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.162 0.838 37 H 0.262 0.738 38 H 0.245 0.755 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.296 19.701 -0.043 21.376 hybrid contribution -0.449 -2.115 0.015 2.162 sum -8.745 17.585 -0.028 19.640 Atomic orbital electron populations 1.22212 0.71871 1.06118 1.04820 1.48691 1.07466 1.00990 1.60714 1.77260 1.01234 1.05463 1.28710 1.22402 0.93822 0.93111 0.97638 1.19147 0.89061 0.93632 0.97460 1.21815 1.01042 1.02074 0.94079 1.21708 1.01842 0.93572 1.01162 1.21833 0.98471 1.01237 0.97707 1.21399 0.96209 0.94943 1.21380 1.17672 0.91059 0.80237 1.00796 1.41611 1.10452 1.00927 1.76794 1.15918 0.84550 0.81243 0.78383 1.90839 1.16749 1.82848 1.58079 1.45259 1.11582 1.02735 1.76598 1.18525 0.87244 0.83374 0.94607 1.21551 0.94465 0.90240 1.53173 0.89602 1.26020 0.95535 1.03955 0.93888 1.70129 1.07190 1.29692 1.49719 0.85218 0.77873 0.76733 0.79452 1.18684 1.21268 1.18699 0.89292 0.87720 0.87875 0.92871 0.89440 0.93683 0.93285 0.90114 0.92613 0.93677 0.89487 0.93201 0.83787 0.73782 0.75519 0.98986 0.98999 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 11.28 127.77 1.44 2.76 16 2 N -0.39 -10.43 4.02 -366.44 -1.47 -11.90 16 3 N -0.30 -9.08 11.88 -47.44 -0.56 -9.65 16 4 C 0.10 3.00 5.65 43.08 0.24 3.24 16 5 C 0.01 0.22 0.96 -52.93 -0.05 0.17 16 6 C -0.13 -2.92 8.46 71.98 0.61 -2.32 16 7 C -0.13 -2.50 8.03 71.98 0.58 -1.92 16 8 C -0.13 -3.17 8.20 71.98 0.59 -2.58 16 9 C -0.31 -11.28 8.94 22.14 0.20 -11.08 16 10 C 0.32 10.51 7.66 131.31 1.01 11.51 16 11 N -0.65 -19.33 5.42 -322.30 -1.75 -21.08 16 12 C 0.70 28.33 8.53 179.06 1.53 29.86 16 13 O -0.61 -30.23 13.47 -4.03 -0.05 -30.28 16 14 N -0.71 -28.66 5.55 -482.29 -2.68 -31.34 16 15 C 0.29 15.13 5.43 85.63 0.46 15.59 16 16 C -0.56 -29.14 9.28 25.60 0.24 -28.90 16 17 H 0.09 4.00 7.60 -2.91 -0.02 3.98 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 20 Si 0.98 41.14 29.54 68.60 2.03 43.16 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 22 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.01 7.51 -2.39 -0.02 0.99 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 33 H 0.04 1.24 7.53 -2.38 -0.02 1.23 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.14 6.22 5.47 -2.91 -0.02 6.20 16 37 H 0.42 8.56 7.98 -92.71 -0.74 7.82 16 38 H 0.41 13.08 8.34 -92.71 -0.77 12.31 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -74.07 342.72 2.63 -71.44 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -0.47 Total: 27.08 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 7.31 Total: 17.13 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -6.18 Total: -128.53 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.28 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -74.07 2.63 -71.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343959795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.985 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds