Wall clock time and date at job start Tue Mar 31 2020 01:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47416 * 2 1 4 4 C 1.35320 * 126.12563 * 84.99823 * 3 2 1 5 5 C 1.39866 * 107.91898 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.89972 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47383 * 94.98014 * 6 5 4 8 8 C 1.34777 * 120.00105 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99977 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99962 * 180.02562 * 8 7 6 11 11 H 1.09003 * 109.47459 * 39.99890 * 10 8 7 12 12 N 1.46902 * 109.47327 * 160.00194 * 10 8 7 13 13 C 1.53002 * 109.46850 * 279.99714 * 10 8 7 14 14 C 1.53005 * 109.46975 * 175.00041 * 13 10 8 15 15 C 1.50701 * 109.46911 * 180.02562 * 14 13 10 16 16 H 1.08002 * 120.00328 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99570 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00463 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47017 * 60.00420 * 19 17 15 21 21 H 1.48501 * 109.47369 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47318 * 300.00519 * 19 17 15 23 23 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 24 24 N 1.34951 * 126.12865 * 265.05917 * 3 2 1 25 25 H 0.96996 * 126.03426 * 359.94715 * 24 3 2 26 26 H 1.08996 * 109.46706 * 299.99690 * 1 2 3 27 27 H 1.09003 * 109.47105 * 59.99679 * 1 2 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47158 * 240.00132 * 2 1 3 30 30 H 1.08991 * 109.47534 * 120.00165 * 2 1 3 31 31 H 1.07993 * 126.03961 * 0.03052 * 4 3 2 32 32 H 1.09000 * 109.47327 * 214.98769 * 6 5 4 33 33 H 1.09003 * 109.46739 * 334.97974 * 6 5 4 34 34 H 0.96997 * 119.99714 * 0.02562 * 7 6 5 35 35 H 1.00903 * 110.99966 * 59.99194 * 12 10 8 36 36 H 1.00900 * 111.00125 * 183.95065 * 12 10 8 37 37 H 1.08991 * 109.47768 * 295.00190 * 13 10 8 38 38 H 1.08998 * 109.47007 * 55.00407 * 13 10 8 39 39 H 1.09006 * 109.47073 * 300.00119 * 14 13 10 40 40 H 1.08998 * 109.46954 * 60.00334 * 14 13 10 41 41 H 0.96997 * 120.00428 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2085 2.2047 1.0889 5 6 2.6868 3.4448 0.6535 6 6 3.0215 4.6214 1.5336 7 7 4.4538 4.6094 1.8411 8 6 4.9841 5.5736 2.6195 9 8 4.2753 6.4508 3.0657 10 6 6.4575 5.5616 2.9353 11 1 7.0175 5.2726 2.0459 12 7 6.8774 6.9025 3.3641 13 6 6.7302 4.5585 4.0580 14 6 8.2385 4.4544 4.2936 15 6 8.5071 3.4660 5.3990 16 1 7.6845 2.9627 5.8852 17 6 9.8032 3.2042 5.7896 18 7 10.8050 3.8174 5.1980 19 14 10.1363 1.9795 7.1602 20 1 9.6018 0.6485 6.7754 21 1 11.6001 1.8783 7.3888 22 1 9.4716 2.4384 8.4064 23 7 2.7935 3.4071 -0.6501 24 7 2.3862 2.1397 -1.0859 25 1 2.3628 1.8328 -2.0058 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0142 1.9226 2.1130 32 1 2.7688 5.5464 1.0154 33 1 2.4505 4.5562 2.4598 34 1 5.0206 3.9076 1.4846 35 1 6.3722 7.1934 4.1877 36 1 7.8737 6.9368 3.5199 37 1 6.2421 4.8950 4.9725 38 1 6.3384 3.5815 3.7754 39 1 8.7267 4.1178 3.3790 40 1 8.6303 5.4315 4.5762 41 1 11.7168 3.6335 5.4730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345754049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:47 Heat of formation + Delta-G solvation = 10.440045 kcal Electronic energy + Delta-G solvation = -21072.625977 eV Core-core repulsion = 17795.015712 eV Total energy + Delta-G solvation = -3277.610266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59552 -39.47083 -35.67878 -35.06328 -34.13698 -32.81966 -31.64931 -29.84735 -29.34977 -27.72952 -25.79551 -24.21184 -23.55175 -20.72738 -20.66933 -20.35979 -19.60755 -17.71222 -17.25612 -16.21498 -16.04167 -15.15681 -14.94692 -14.76961 -14.72697 -14.42722 -14.15493 -13.91101 -13.66544 -13.28427 -13.02714 -12.81097 -12.72056 -12.54676 -12.11107 -11.91134 -11.63118 -11.56853 -11.05419 -10.89464 -10.83601 -10.69343 -10.00221 -9.94936 -9.70424 -9.25432 -9.14953 -8.93806 -8.88662 -8.41701 -8.13070 -6.06387 -4.09493 1.52724 2.32061 2.53156 3.00083 3.29690 3.34499 3.36830 3.57143 4.15359 4.35979 4.41061 4.50837 4.78552 4.90188 5.09326 5.18498 5.24873 5.27431 5.29815 5.41442 5.46167 5.55687 5.64982 5.66871 5.70906 5.81912 5.92091 6.31591 6.33750 6.52517 6.57338 6.91566 6.97207 7.38899 7.48594 7.55021 7.65060 7.76050 7.90804 7.96457 8.33626 8.51721 8.96395 9.55159 11.04532 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.003401 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.950406 B = 8229.817068 C = 9574.949397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C 0.088 3.912 4 C -0.253 4.253 5 C 0.064 3.936 6 C 0.204 3.796 7 N -0.728 5.728 8 C 0.528 3.472 9 O -0.539 6.539 10 C 0.076 3.924 11 H 0.096 0.904 12 N -0.831 5.831 13 C -0.137 4.137 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.275 5.275 24 N -0.471 5.471 25 H 0.437 0.563 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.403 0.597 35 H 0.345 0.655 36 H 0.354 0.646 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.581 -7.138 -12.105 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.040 4.040 4 C -0.282 4.282 5 C -0.103 4.103 6 C 0.078 3.922 7 N -0.382 5.382 8 C 0.315 3.685 9 O -0.414 6.414 10 C -0.040 4.040 11 H 0.114 0.886 12 N -0.363 5.363 13 C -0.177 4.177 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.099 5.099 24 N -0.180 5.180 25 H 0.281 0.719 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.168 0.832 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.238 0.762 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.851 -5.551 -13.511 23.848 hybrid contribution 0.629 -2.265 1.594 2.840 sum -18.222 -7.816 -11.918 23.134 Atomic orbital electron populations 1.21757 0.93810 1.02353 1.02658 1.20251 0.96611 0.89155 1.04231 1.21136 0.99623 0.95517 0.87741 1.21201 1.13571 0.93838 0.99620 1.22245 1.00107 0.96332 0.91630 1.19442 0.82698 0.93524 0.96502 1.45944 1.08793 1.30348 1.53148 1.20879 0.90699 0.80132 0.76809 1.90637 1.62544 1.36266 1.51983 1.21459 0.90772 0.91385 1.00335 0.88594 1.58734 1.11288 1.23619 1.42625 1.22378 1.01932 0.97262 0.96117 1.19102 0.87881 0.97231 0.97075 1.21157 0.92100 1.24242 1.18721 0.92740 1.25013 0.96326 0.96270 0.96713 1.69939 0.99008 1.42485 1.41825 0.86644 0.77080 0.81692 0.82513 1.20233 1.21246 1.20207 1.77368 1.21405 0.98504 1.12622 1.46328 1.52814 1.10175 1.08702 0.71883 0.91782 0.92722 0.91654 0.90591 0.88780 0.83190 0.90130 0.89516 0.76245 0.84130 0.83072 0.92619 0.92506 0.96359 0.96388 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.06 -0.33 6.48 -27.88 -0.18 -0.51 16 3 C 0.09 0.75 6.46 -82.26 -0.53 0.22 16 4 C -0.25 -2.58 10.65 -40.01 -0.43 -3.01 16 5 C 0.06 0.75 6.59 -82.41 -0.54 0.21 16 6 C 0.20 2.58 6.23 -5.19 -0.03 2.54 16 7 N -0.73 -10.19 5.55 -61.47 -0.34 -10.53 16 8 C 0.53 9.03 7.08 -10.99 -0.08 8.95 16 9 O -0.54 -10.70 16.25 5.55 0.09 -10.61 16 10 C 0.08 1.33 3.21 -68.86 -0.22 1.11 16 11 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 12 N -0.83 -14.72 8.94 -5.65 -0.05 -14.77 16 13 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 14 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 15 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 N -0.28 -3.36 12.70 33.67 0.43 -2.94 16 24 N -0.47 -4.23 7.36 33.48 0.25 -3.98 16 25 H 0.44 2.57 8.96 -182.61 -1.64 0.93 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 5.19 8.46 -40.82 -0.35 4.85 16 35 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 36 H 0.35 6.26 7.55 -39.29 -0.30 5.96 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -33.22 349.71 -8.54 -41.76 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.59 Total: 11.39 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.32 Total: -6.43 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 1.02 Total: -57.68 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.22 -8.54 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345754049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.203 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds