Wall clock time and date at job start Tue Mar 31 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30524 * 126.34863 * 2 1 4 4 N 1.28594 * 109.67432 * 180.02562 * 3 2 1 5 5 C 1.30521 * 109.67362 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.34854 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47242 * 90.01734 * 6 5 4 8 8 N 1.46506 * 109.47289 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00072 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99838 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47353 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47245 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46946 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99789 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00146 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00111 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47017 * 90.00355 * 18 16 14 20 20 H 1.48507 * 109.47241 * 210.00244 * 18 16 14 21 21 H 1.48500 * 109.47209 * 330.00209 * 18 16 14 22 22 N 1.35490 * 107.30591 * 0.21958 * 5 4 3 23 23 C 1.46508 * 126.97984 * 179.77845 * 22 5 4 24 24 H 1.08997 * 109.46984 * 89.96765 * 1 2 3 25 25 H 1.09003 * 109.46827 * 209.97650 * 1 2 3 26 26 H 1.08999 * 109.46595 * 329.97337 * 1 2 3 27 27 H 1.09001 * 109.46948 * 330.02123 * 6 5 4 28 28 H 1.08996 * 109.47390 * 210.01764 * 6 5 4 29 29 H 1.09001 * 109.47289 * 60.00043 * 7 6 5 30 30 H 1.09004 * 109.47261 * 300.00299 * 7 6 5 31 31 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 32 32 H 1.09004 * 109.47043 * 299.99952 * 11 9 8 33 33 H 1.09001 * 109.47324 * 59.99585 * 11 9 8 34 34 H 1.08996 * 109.46524 * 299.99867 * 12 11 9 35 35 H 1.08992 * 109.46876 * 59.99534 * 12 11 9 36 36 H 1.09004 * 109.47108 * 299.99712 * 13 12 11 37 37 H 1.09001 * 109.47367 * 59.99410 * 13 12 11 38 38 H 0.96997 * 120.00538 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.46941 * 90.00165 * 23 22 5 40 40 H 1.09008 * 109.46667 * 210.00333 * 23 22 5 41 41 H 1.08998 * 109.46901 * 329.99871 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6823 -0.0005 5 6 3.5808 -0.6211 -0.0015 6 6 4.8396 -1.4496 -0.0029 7 6 5.2664 -1.7313 1.4391 8 7 6.4906 -2.5362 1.4378 9 6 7.0538 -2.9080 2.6043 10 8 6.5471 -2.5768 3.6552 11 6 8.3133 -3.7355 2.6028 12 6 8.7394 -4.0184 4.0449 13 6 10.0178 -4.8590 4.0434 14 6 10.4377 -5.1371 5.4637 15 1 9.8517 -4.7524 6.2853 16 6 11.5707 -5.8818 5.7143 17 7 11.9370 -6.1250 6.9538 18 14 12.5847 -6.5466 4.2933 19 1 13.6222 -5.5527 3.9181 20 1 13.2394 -7.8150 4.7031 21 1 11.6985 -6.8007 3.1291 22 7 2.3101 -1.0913 -0.0064 23 6 1.8897 -2.4948 -0.0137 24 1 -0.3633 0.0006 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3632 0.8898 0.5143 27 1 5.6321 -0.9053 -0.5166 28 1 4.6537 -2.3922 -0.5175 29 1 4.4739 -2.2755 1.9529 30 1 5.4524 -0.7886 1.9538 31 1 6.8956 -2.8014 0.5972 32 1 8.1283 -4.6780 2.0875 33 1 9.1056 -3.1903 2.0898 34 1 8.9243 -3.0761 4.5605 35 1 7.9470 -4.5637 4.5575 36 1 9.8324 -5.8013 3.5278 37 1 10.8104 -4.3141 3.5305 38 1 12.7338 -6.6492 7.1302 39 1 1.7832 -2.8474 1.0120 40 1 0.9340 -2.5850 -0.5302 41 1 2.6392 -3.0958 -0.5286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447930882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:32 Heat of formation + Delta-G solvation = -10.002444 kcal Electronic energy + Delta-G solvation = -20708.473993 eV Core-core repulsion = 17429.977274 eV Total energy + Delta-G solvation = -3278.496719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.20345 -40.76566 -36.97592 -36.13404 -35.98390 -34.21404 -33.96376 -31.68201 -30.10470 -28.51655 -28.07339 -25.97494 -24.34015 -22.22793 -22.11771 -21.81907 -21.12339 -18.93649 -18.02439 -17.83157 -17.53704 -16.96679 -16.83472 -16.22214 -15.99276 -15.40155 -15.14670 -14.84904 -14.58982 -14.54033 -14.41872 -13.89083 -13.80992 -13.50910 -13.35837 -13.22887 -13.06716 -12.70098 -12.65943 -12.55668 -12.43009 -11.77176 -11.71562 -11.47263 -11.35708 -11.30813 -11.14340 -10.85859 -10.73604 -10.16400 -10.10415 -8.26231 -6.32015 0.71223 1.40084 1.43789 1.48869 1.55784 1.66775 1.72788 2.19429 2.40673 3.08851 3.27255 3.52044 3.75696 3.77305 3.80029 3.95450 4.13535 4.20406 4.26421 4.30124 4.38029 4.55463 4.61959 4.66493 4.77509 4.86630 4.91467 4.95642 4.97138 5.00037 5.00361 5.06402 5.19881 5.37041 5.59455 5.62968 5.70107 5.90441 6.32389 6.57395 6.77084 7.29862 7.32483 7.67068 8.91462 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046815 B = 0.002294 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.953466 B =12204.453721 C =12277.345983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.175 3.825 3 N -0.350 5.350 4 N -0.338 5.338 5 C 0.174 3.826 6 C -0.030 4.030 7 C 0.132 3.868 8 N -0.713 5.713 9 C 0.513 3.487 10 O -0.591 6.591 11 C -0.129 4.129 12 C -0.083 4.083 13 C -0.009 4.009 14 C -0.540 4.540 15 H 0.017 0.983 16 C -0.007 4.007 17 N -0.958 5.958 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.232 1.232 22 N -0.470 5.470 23 C 0.057 3.943 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.423 0.577 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.171 4.229 -25.603 34.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 N -0.191 5.191 4 N -0.178 5.178 5 C -0.095 4.095 6 C -0.069 4.069 7 C 0.007 3.993 8 N -0.367 5.367 9 C 0.301 3.699 10 O -0.471 6.471 11 C -0.168 4.168 12 C -0.122 4.122 13 C -0.047 4.047 14 C -0.578 4.578 15 H 0.035 0.965 16 C -0.202 4.202 17 N -0.599 5.599 18 Si 0.786 3.214 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.155 1.155 22 N -0.161 5.161 23 C -0.084 4.084 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.135 0.865 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.262 0.738 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.021 5.813 -24.782 34.320 hybrid contribution 0.380 -1.302 0.348 1.400 sum -22.641 4.511 -24.434 33.615 Atomic orbital electron populations 1.20447 0.80557 1.05865 1.05533 1.25663 0.98764 0.82499 1.02421 1.74156 0.96941 1.26341 1.21612 1.74144 1.13066 1.10265 1.20277 1.24820 0.88161 0.92075 1.04475 1.20199 0.90306 0.99995 0.96408 1.21035 0.86980 0.94872 0.96462 1.45715 1.27368 1.54571 1.09057 1.21236 0.86106 0.79380 0.83181 1.90708 1.65411 1.57374 1.33636 1.21724 0.94626 1.01660 0.98834 1.21060 0.97136 0.98752 0.95221 1.19555 0.94447 0.96241 0.94431 1.21581 1.09915 1.33006 0.93321 0.96451 1.26248 0.98829 0.96038 0.99107 1.70114 1.26427 1.41370 1.21981 0.85467 0.78768 0.77651 0.79538 1.19050 1.21337 1.15472 1.46276 1.05713 1.10371 1.53692 1.22596 1.04847 0.75261 1.05671 0.87701 0.87709 0.88846 0.86515 0.85153 0.92266 0.93905 0.73810 0.85807 0.86249 0.94911 0.94522 0.94790 0.95221 0.92557 0.89121 0.86251 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.05 71.24 0.72 0.28 16 2 C 0.17 3.00 8.03 137.98 1.11 4.11 16 3 N -0.35 -9.42 12.21 -50.15 -0.61 -10.03 16 4 N -0.34 -9.31 12.21 -50.16 -0.61 -9.92 16 5 C 0.17 3.21 7.28 137.98 1.01 4.21 16 6 C -0.03 -0.32 5.68 29.85 0.17 -0.15 16 7 C 0.13 2.36 5.66 86.38 0.49 2.85 16 8 N -0.71 -12.11 5.56 -463.05 -2.57 -14.68 16 9 C 0.51 14.31 7.83 87.66 0.69 15.00 16 10 O -0.59 -23.52 15.98 -3.04 -0.05 -23.57 16 11 C -0.13 -3.39 5.70 29.85 0.17 -3.22 16 12 C -0.08 -3.41 4.44 30.59 0.14 -3.27 16 13 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 14 C -0.54 -32.40 9.66 25.60 0.25 -32.15 16 15 H 0.02 1.17 7.99 -2.91 -0.02 1.15 16 16 C -0.01 -0.39 5.47 84.65 0.46 0.07 16 17 N -0.96 -61.94 13.96 21.45 0.30 -61.64 16 18 Si 0.96 43.47 27.47 68.60 1.88 45.35 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.23 -9.15 6.54 99.48 0.65 -8.50 16 22 N -0.47 -6.30 3.15 -527.23 -1.66 -7.96 16 23 C 0.06 0.14 10.71 127.77 1.37 1.51 16 24 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 25 H 0.10 0.13 7.87 -2.39 -0.02 0.11 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.13 0.36 7.21 -2.39 -0.02 0.34 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 31 H 0.42 3.41 8.47 -92.71 -0.79 2.62 16 32 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.03 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.03 1.44 7.20 -2.38 -0.02 1.42 16 37 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.12 -0.30 7.82 -2.38 -0.02 -0.32 16 41 H 0.11 -0.15 7.19 -2.39 -0.02 -0.17 16 Total: -1.00 -94.40 346.83 3.54 -90.86 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 0.18 Total: 2.66 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 6.68 Total: -11.07 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -5.16 Total: -104.23 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -94.40 3.54 -90.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447930882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.853 kcal (2) G-P(sol) polarization free energy of solvation -94.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds