Wall clock time and date at job start Tue Mar 31 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 N 1.46493 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99973 * 275.30428 * 4 3 2 6 6 H 1.07999 * 119.99585 * 37.58404 * 5 4 3 7 7 C 1.38810 * 120.00156 * 217.57611 * 5 4 3 8 8 N 1.31617 * 119.99932 * 21.43733 * 7 5 4 9 9 Si 1.86800 * 119.99770 * 201.43321 * 7 5 4 10 10 H 1.48498 * 109.47408 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47151 * 120.00439 * 9 7 5 12 12 H 1.48499 * 109.46898 * 239.99913 * 9 7 5 13 13 C 1.46507 * 120.00353 * 95.30830 * 4 3 2 14 14 C 1.53000 * 109.46819 * 270.00020 * 13 4 3 15 15 N 1.46504 * 109.46852 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99786 * 180.02562 * 15 14 13 17 17 O 1.21570 * 120.00245 * 359.97438 * 16 15 14 18 18 C 1.47707 * 119.99807 * 180.02562 * 16 15 14 19 19 N 1.31807 * 126.52157 * 359.96186 * 18 16 15 20 20 N 1.28468 * 110.07957 * 180.02562 * 19 18 16 21 21 H 0.96996 * 124.88756 * 179.97438 * 20 19 18 22 22 C 1.35038 * 110.22634 * 359.74383 * 20 19 18 23 23 C 1.35363 * 107.22792 * 0.40560 * 22 20 19 24 24 C 1.50709 * 127.24703 * 179.88295 * 23 22 20 25 25 H 1.08998 * 109.46907 * 299.99956 * 1 2 3 26 26 H 1.08994 * 109.47532 * 60.00346 * 1 2 3 27 27 H 1.09002 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47429 * 240.00001 * 2 1 3 29 29 H 1.09002 * 109.47251 * 119.99533 * 2 1 3 30 30 H 1.08991 * 109.47309 * 59.99529 * 3 2 1 31 31 H 1.09002 * 109.46694 * 299.99874 * 3 2 1 32 32 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47292 * 150.00074 * 13 4 3 34 34 H 1.09000 * 109.46532 * 29.99902 * 13 4 3 35 35 H 1.09004 * 109.46970 * 60.00098 * 14 13 4 36 36 H 1.08993 * 109.47590 * 299.99708 * 14 13 4 37 37 H 0.97000 * 119.99889 * 0.02562 * 15 14 13 38 38 H 1.08001 * 126.38492 * 180.30004 * 22 20 19 39 39 H 1.08999 * 109.46750 * 269.68338 * 24 23 22 40 40 H 1.08996 * 109.46792 * 149.68131 * 24 23 22 41 41 H 1.08999 * 109.46835 * 29.68161 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3328 1.1799 6 1 3.8185 0.6872 1.9619 7 6 5.3623 2.0513 1.3715 8 7 5.6023 3.1241 0.6479 9 14 6.5989 1.4954 2.6565 10 1 6.0969 0.2706 3.3295 11 1 7.8977 1.2015 1.9991 12 1 6.7857 2.5721 3.6620 13 6 4.2370 1.5602 -1.2642 14 6 4.4918 0.1648 -1.8377 15 7 5.2233 0.2824 -3.1016 16 6 5.5595 -0.8256 -3.7912 17 8 5.2561 -1.9227 -3.3643 18 6 6.2975 -0.7071 -5.0651 19 7 6.6893 0.4106 -5.6436 20 7 7.3045 0.1474 -6.7403 21 1 7.6824 0.8117 -7.3376 22 6 7.3538 -1.1873 -6.9393 23 6 6.7180 -1.7718 -5.8969 24 6 6.5081 -3.2464 -5.6673 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 6.4216 3.6259 0.7815 33 1 5.1894 2.0598 -1.0872 34 1 3.6475 2.1422 -1.9727 35 1 3.5393 -0.3347 -2.0147 36 1 5.0811 -0.4172 -1.1292 37 1 5.4657 1.1578 -3.4420 38 1 7.8132 -1.6939 -7.7752 39 1 5.5669 -3.5546 -6.1227 40 1 6.4762 -3.4464 -4.5963 41 1 7.3292 -3.8046 -6.1169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481135225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:15 Heat of formation + Delta-G solvation = 21.032414 kcal Electronic energy + Delta-G solvation = -21881.789313 eV Core-core repulsion = 18604.638367 eV Total energy + Delta-G solvation = -3277.150946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.61986 -40.39800 -38.23657 -35.79515 -34.60618 -33.97137 -32.83847 -32.17174 -29.77355 -28.00499 -27.34357 -25.83860 -24.30599 -22.59453 -21.90961 -21.51222 -21.05451 -19.14192 -18.70760 -17.88941 -17.08294 -16.89058 -16.75025 -16.14621 -15.78969 -15.47177 -15.18796 -14.76675 -14.36594 -14.24295 -14.19671 -14.00204 -13.76978 -13.33967 -13.08472 -13.02876 -12.93008 -12.65211 -12.49966 -12.21600 -12.03640 -11.87602 -11.82081 -11.68584 -11.34358 -11.08842 -10.54626 -10.47500 -10.02082 -9.76849 -8.60276 -7.86184 -5.49546 0.52277 1.19687 1.41834 1.46586 1.56055 1.94197 2.31664 2.35857 2.50929 3.21499 3.43113 3.74879 3.95874 4.15853 4.23249 4.34374 4.37798 4.49167 4.56591 4.58939 4.69025 4.72401 4.85590 4.92263 4.99455 5.04337 5.15193 5.20462 5.22968 5.26994 5.37933 5.44518 5.56500 5.63569 5.65150 5.72872 6.18328 6.43634 6.52164 6.90053 7.12915 7.19437 7.81675 8.34410 9.09790 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.004596 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.461815 B = 6090.452917 C = 7089.993272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.597 5.597 5 C -0.269 4.269 6 H 0.054 0.946 7 C -0.029 4.029 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.146 3.854 14 C 0.121 3.879 15 N -0.704 5.704 16 C 0.590 3.410 17 O -0.570 6.570 18 C -0.044 4.044 19 N -0.275 5.275 20 N -0.362 5.362 21 H 0.465 0.535 22 C 0.010 3.990 23 C -0.177 4.177 24 C -0.075 4.075 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.253 0.747 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.034 0.966 37 H 0.410 0.590 38 H 0.236 0.764 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -6.435 -17.975 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.399 4.399 6 H 0.072 0.928 7 C -0.227 4.227 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.218 1.218 12 H -0.212 1.212 13 C 0.019 3.981 14 C -0.005 4.005 15 N -0.355 5.355 16 C 0.376 3.624 17 O -0.449 6.449 18 C -0.203 4.203 19 N -0.114 5.114 20 N -0.079 5.079 21 H 0.314 0.686 22 C -0.134 4.134 23 C -0.187 4.187 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.246 0.754 38 H 0.252 0.748 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.911 -5.914 -17.448 18.521 hybrid contribution 1.045 -0.145 0.458 1.150 sum 2.956 -6.058 -16.989 18.278 Atomic orbital electron populations 1.21649 0.94189 1.01816 1.01978 1.22017 0.96471 0.98684 1.00317 1.21056 0.83239 0.94636 0.99057 1.43843 1.00912 1.85089 1.01871 1.19206 1.06234 1.19827 0.94653 0.92849 1.25774 1.02158 0.94707 1.00049 1.70098 1.25855 1.15684 1.43912 0.85485 0.79280 0.78123 0.79246 1.19528 1.21807 1.21176 1.20890 0.99153 0.91841 0.86249 1.21985 0.94421 1.01095 0.83006 1.45887 1.57021 1.09264 1.23308 1.17396 0.78300 0.84065 0.82624 1.90714 1.56608 1.27396 1.70143 1.21768 1.08232 0.91771 0.98524 1.73486 1.12688 1.25966 0.99218 1.43369 1.39842 1.08408 1.16253 0.68582 1.23334 1.04210 0.83663 1.02236 1.20745 1.04682 0.97442 0.95862 1.20131 1.02585 0.88437 1.02126 0.92537 0.92165 0.92195 0.93654 0.94167 0.94488 0.93392 0.93749 0.91015 0.93967 0.92920 0.94760 0.75425 0.74756 0.91314 0.93223 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.23 16 2 C -0.14 -5.03 6.23 30.59 0.19 -4.83 16 3 C 0.15 6.17 5.72 86.38 0.49 6.67 16 4 N -0.60 -30.00 2.43 -702.01 -1.71 -31.71 16 5 C -0.27 -14.92 9.45 84.03 0.79 -14.13 16 6 H 0.05 3.00 7.92 -2.91 -0.02 2.97 16 7 C -0.03 -1.62 4.95 84.86 0.42 -1.20 16 8 N -0.91 -52.72 11.47 21.65 0.25 -52.48 16 9 Si 0.95 45.39 29.60 68.60 2.03 47.42 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.15 6.88 5.45 86.38 0.47 7.35 16 14 C 0.12 5.32 6.00 86.38 0.52 5.84 16 15 N -0.70 -27.27 5.55 -466.10 -2.59 -29.86 16 16 C 0.59 22.96 7.82 86.75 0.68 23.64 16 17 O -0.57 -25.28 15.12 -3.94 -0.06 -25.34 16 18 C -0.04 -1.37 7.13 42.46 0.30 -1.07 16 19 N -0.28 -7.24 11.92 -48.18 -0.57 -7.81 16 20 N -0.36 -5.66 6.83 -57.51 -0.39 -6.05 16 21 H 0.47 3.04 8.96 -220.00 -1.97 1.07 16 22 C 0.01 0.15 11.97 83.54 1.00 1.15 16 23 C -0.18 -4.28 6.25 -19.72 -0.12 -4.41 16 24 C -0.08 -1.68 9.93 71.24 0.71 -0.97 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.74 6.64 -2.39 -0.02 1.73 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 32 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.07 3.83 5.52 -2.39 -0.01 3.82 16 34 H 0.04 1.84 7.86 -2.39 -0.02 1.83 16 35 H 0.05 2.31 6.64 -2.38 -0.02 2.30 16 36 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 14.54 8.20 -92.71 -0.76 13.78 16 38 H 0.24 0.71 8.06 -2.91 -0.02 0.68 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.45 6.72 -2.39 -0.02 1.44 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -73.26 342.79 1.44 -71.82 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -1.68 Total: 19.20 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.17 Total: 14.81 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -5.02 Total: -127.91 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.06 Total: -25.34 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.26 1.44 -71.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481135225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.851 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds